Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0086400 |
| Transcript ID | LotjaGi4g1v0086400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor; TAIR: AT1G30480.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic; TrEMBL-Plants: tr|V7CI72|V7CI72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0086400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11392781..11397125) extracted from Lotus japonicus Gifu genome v1.2.
ACACATGTTACGTATCATTAGTCTAAAAAAACGTATCCAATCGCATATCGATACTTACTACCATCATGATCCTAAGCCCT AACCCCTAATCAATCACACGGTGTGTGATCTTTTTCTTCATCAATTTCATTTCCAAAATGTTGGGTGGGCTTTACGGTGA TCTACCACCACCCTCTTCGGCGGAGGAAGACAAACCAACCACCAATGTCTGGTCCTCCAGCACCAAGATGGCCCCCGCCA CCCTCCGCAAACCGGCCTTCACACCTCCCCACACCATTCCCAGATCGCAGACCAAACCCAAACCCACGGTCACCAGAACG GTGGTTTCCACCGCACCGTCACCTGTGCCGGCCCCGGATGATGCCGTCCAACCTGCCCTGGTGGGTGTCCAGTCCACGGT GATGGAGGAGTACGACCCGGCCAGGCCGAACGACTACGAGGAGTATCGGAGGGAGAAGAAGAAGAAGGCGAGGGAGGCGG AGGTGATGAGGGAGCTGGAGAGGCGGCGGCAGGAGGAAGAGGAGGAGGAAGAGAAGAGGGAGAAGGAGAGGGAGAGGCAG AGAGAGAGGGATAGTGATTCTAGGTTGAATATTTCTGGTGAGGAGGCGTGGAGGAGGAGGGCGGCGATGGGTGGTGGCGG TGGCGGTGGCGGTGGTGGGAGCAGCGGTGGGACGGTACCGAGGTCGCCGTCTCCGCCGCCAGGGAATGGTGGGGATGGAT TTAGTATTGGGAAGTCGGAGACGGGAGGGTTGGGGGTTGGTGCAGGTGGGCAGATGACTGCGGCGCAGAGGATGATGGCG AAGATGGGGTGGAAGCAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATCACCACGCCATTGATGGCGAAGAAAACGGA TAGGAGAGCTGGGGTTATTGTCAATGCCAGTGACAATAGCAAGAAAGTGAAGAGTGTTAACTTCAATGGGGTGCCTACCA GGGTGCTGCTTCTTAGGAACATGGTATGGTTTCAAAGTGCTTTTGAAATTTTATTTCTTTGTGCTGCTTCGATTTTTTAG TGCTTATGATCTCATTCACAAATCACAATGTTGAAATTTCATGAATCTCATCAATCACATGATCATGTTTTATGTGGGAT ATGTGGGTAACTTTTTATGGGAGCTTGTTCTATAGCTATTTCTCATTTTCTCGACGTTATAGTTGTATTCTTGTGCAATG CTTTGAAGCTGCCTTTATGAATTTTAGTTAACTGGTTTCGTGCTAAATTTAGTTAAAAATTTCACAATTTGTTGTTTGTT TGTTTGTCATATACTCATATTGTATGTGTAGATTGCTAATTTGTTCTTTTGAACCATCAAATGACTGATCAGTGGATGTG ATTTTAATCATCTATGGTTTTATCTTTCAGCTCAATGAGCTCTGATCAGCTCATATCACTCTGACTTATGAAAAATGAAC ACATCATACTTTTAATTGGTTTCCCTTTTGCTAATGAAGCTGTTTTGTCAGTTAAAAATTGTATCTTACATAGTGATAGT TTATAACTACTTTTAAGTGCGATGTTGAAGATTCATGTTAAATATCCATTAGCAATCTTTGTTAGGGAAAATAAGGATGG GCCCAAAGAGCCAAGTTGGCAAGTTTCCATTAGTTAGATCTTGTTAGTTAAGTACTAGAGTTGTTGGGCTTAGTTAGTTA GCTCTCTAACTGCAGTATCAGAGACAGGATATAAATAATATAAGTGAGGGGAGTTAGTTGGTCAGTTAATTTTGGGTGGA GGAGACCAGGATCTTGAATTCATGGGGAAGGAAATTAGGTAATCATTCTTTCCCTTCCTAACATGGGTTCTCCTTTGATC CGGGCTAAGCAAGGATTAGCCTGAATTCTATAAGATCAGTGATGCTCTTTCTTATTGAAAATTTGGAAGTGGAGTGCAAA TAGGTAATAAAAAAGTGTAAAAGAGATGAGATTGCAGAGGTGGTTGAATAGACATGCAAGAAAGGATGAGGAAGATGAGG AATGAATCCATTCAAGAGAAAGTTTGAGCAACATCTGTTAAAATAAAAGTAGAAATTTTATGCCCCTTTGCTTCTCTATT ATGTATTTGGCTTCTGCATTTGATAATCTTGTCTTTTTATCTGTGGTACATGTTCTTTCTTTTTTTCTTTTGAAGTTGAT AATGATGTAGAGACATATCTCTTCTTTTTCAAGTGTTGGACCGTCAGGAATTCTACTGCTTATGGTGGTTATCCCTTTTT CCTCCAGTGGGGATGAGTAACTCGTTTCTCAAGTGTCTTATTCTAAGATAATTATGATGTTAATGCTTTTTGAGAGAATA TTTGTAATTATCCATATGTTATGTTAAATTTGGAAGTAGGGTTTAAGTAGACTGTGTTTTGGGATATCTTATTCCTGAAT ACATTATGGTGCTATTTCTTTTCTTGTATCCACTTCAGTGTTAAGTTTGAGTAACTTGTTCTTGTAGGTTTTCAGTCCTT CGAAATGTTTATATAAGGTTTTTGTGAGTCATGGGGACAAGCTTCTTTCTAGCTGAGTTGTATTGAGTCAGTAGTCGTGA GGTCAATGTATTATATATATTTGTGAAAGCTAAATGAATAATTTTTGTTTTTTTTTTGGGAAATAGGACCTGAGAGGGTA TGTTCCTGTCCTGTCATAATATTATGAAGTTGTTGAAATTTTGTCTGTTGCTTTTTTGTTCTGAAATCTTGCTTCATTCT TGAGGTATAGTAATGACGATATCCTTGATACATAAGTAAATTCACTTTTGAATTTGTGCATACCTTAAAATGGTTGATAA ATATTTACTGACATGCTTTATAGATTATGTCTGTTGTAAACTGATTGGGCATTGTGGTAGAGCATATTGGTGTGCATCGT TAGTACTGATATTGATCATAAAGTCATAAATCAGATTGAAGTGTTCACTTGAACATGATGTGGTACTTTGCTTTGACATT GTGATCAACAGAACAGGATGTGGTACTCTGGGAGGGGAGGATAACCTTTCGGTCCTAAGCAGGAAATATATACTATTACT AGAGTCCTCTCTCCCCCTCCTACCACAAAAACCAAAACAAAAAACTTATGACAACCCCTGTGCTAAAGAGCTCGTCAATC CCAAAATTTGAGATGTTGCACATCAACCTTTTTATCTTCTAGTCAATGGGTAATTGAATTGTAATTGATGCCATAGTTGT GATTTTCATAACAAGTCTAGTTTCCAGAAGAGACCTACAGAGTTGTTGCTTCATATATACTGAAAACTGTAATTTGTCTT CGCAATGAACCAGATTTTGTGGACTGCACACATGTCATATTTGCTTACTTTGATGCTTATTATTTAATCTATGCCATTAA AAGCTCAATGGTGATTGCATTATTTGGTATATTCATAGTTTAATTTGATTATACAAGACTGACTGTTCGCGCTTTCTTGT TGAAGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGACGAGGTAGGATCAGAATGCGCCAAGTACGGGACAGTGACT CGAGTTTTGATATTTGAGATAACGGAGCCGAATTTCCCCGTTGATGAAGCAGTAAGGATTTTTGTGCAGTTTGAGAGATC CGAAGAAACAACGAAAGCGTTAATTGACCTTGATGGTAGGTTCTTTGGGGGTAGAGTAGTGCGCGCCACATTTTATGACG AGGATAAGTTTGGAAAGAATGAGTTGGCTCCAATGCCTGGAGAAATTCCTGGCTTCACCTGAAAGAACAAAGCGTCTATG ATTTTCTTAAGTAGTTGTATTTAGTGATTTCCCTGAAGACTTGAAATTTGAGTTTAAAATATGATTCCATGATAGTTGAG CATTGTTACAAGCTTCAATCTTGGTCCAAATGTGTAATGTGTTGGTAACAGACTAACAGTGTTTGGTCAGGGAATTATTG TGGTGACAAGAACAGTGAAAGTTCCTTATTAGTGTTAATGTTGTCCCTGTACATTATCGAAAGTTGGTTAATGAGTTAAT GAAAGATCACTTCAAGTTTGAGATAACATCAAATGAGCTACTTCGCTCTTAAACTGTTTCAGATTATATCCATTGATTGC TTTACGCAAATGACATCGCCTTAGAATTCATTCTTATGTGTAAGAAAATGGAATTTCAAATCAATGACCATGTATATAAT AGCCGTTTGCATATTTGTGTTTCAAAAAAAATTCATATCTATTTTTATACGCATTGTATTTTAATTCAGTTCAATACTAG AAAAATATTTAACCCGCTTGTTGTGTGTGGTTGTTTATAAACATGTCAATGAATTTTTTTTGTTTTCTTATAATGAACAT GATCCCTGAATTCATGACAGTGCAC
CDS sequence (LotjaGi4g1v0086400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGGTGGGCTTTACGGTGATCTACCACCACCCTCTTCGGCGGAGGAAGACAAACCAACCACCAATGTCTGGTCCTC CAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCGGCCTTCACACCTCCCCACACCATTCCCAGATCGCAGACCAAAC CCAAACCCACGGTCACCAGAACGGTGGTTTCCACCGCACCGTCACCTGTGCCGGCCCCGGATGATGCCGTCCAACCTGCC CTGGTGGGTGTCCAGTCCACGGTGATGGAGGAGTACGACCCGGCCAGGCCGAACGACTACGAGGAGTATCGGAGGGAGAA GAAGAAGAAGGCGAGGGAGGCGGAGGTGATGAGGGAGCTGGAGAGGCGGCGGCAGGAGGAAGAGGAGGAGGAAGAGAAGA GGGAGAAGGAGAGGGAGAGGCAGAGAGAGAGGGATAGTGATTCTAGGTTGAATATTTCTGGTGAGGAGGCGTGGAGGAGG AGGGCGGCGATGGGTGGTGGCGGTGGCGGTGGCGGTGGTGGGAGCAGCGGTGGGACGGTACCGAGGTCGCCGTCTCCGCC GCCAGGGAATGGTGGGGATGGATTTAGTATTGGGAAGTCGGAGACGGGAGGGTTGGGGGTTGGTGCAGGTGGGCAGATGA CTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGCAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATCACCACG CCATTGATGGCGAAGAAAACGGATAGGAGAGCTGGGGTTATTGTCAATGCCAGTGACAATAGCAAGAAAGTGAAGAGTGT TAACTTCAATGGGGTGCCTACCAGGGTGCTGCTTCTTAGGAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAG ACGAGGTAGGATCAGAATGCGCCAAGTACGGGACAGTGACTCGAGTTTTGATATTTGAGATAACGGAGCCGAATTTCCCC GTTGATGAAGCAGTAAGGATTTTTGTGCAGTTTGAGAGATCCGAAGAAACAACGAAAGCGTTAATTGACCTTGATGGTAG GTTCTTTGGGGGTAGAGTAGTGCGCGCCACATTTTATGACGAGGATAAGTTTGGAAAGAATGAGTTGGCTCCAATGCCTG GAGAAATTCCTGGCTTCACCTGA
Protein sequence (LotjaGi4g1v0086400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPAFTPPHTIPRSQTKPKPTVTRTVVSTAPSPVPAPDDAVQPA LVGVQSTVMEEYDPARPNDYEEYRREKKKKAREAEVMRELERRRQEEEEEEEKREKERERQRERDSDSRLNISGEEAWRR RAAMGGGGGGGGGGSSGGTVPRSPSPPPGNGGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITT PLMAKKTDRRAGVIVNASDNSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFP VDEAVRIFVQFERSEETTKALIDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 211 | 211 | - | – | |
| PANTHER | 1 | 371 | 371 | 4.2E-127 | ||
| PIRSF | 3 | 376 | 374 | 7.5E-116 | ||
| MobiDBLite | 16 | 33 | 18 | - | – | |
| MobiDBLite | 45 | 66 | 22 | - | – | |
| MobiDBLite | 94 | 156 | 63 | - | – | |
| Coils | 100 | 146 | 47 | - | – | |
| SMART | 210 | 256 | 47 | 4.4E-16 | ||
| ProSiteProfiles | 212 | 258 | 47 | 15.725 | ||
| Pfam | 215 | 254 | 40 | 1.8E-16 | ||
| CDD | 273 | 369 | 97 | 5.82443E-60 | ||
| Gene3D | 274 | 360 | 87 | 2.8E-25 | ||
| ProSiteProfiles | 275 | 361 | 87 | 9.712 | ||
| SMART | 276 | 357 | 82 | 1.9E-26 | ||
| SUPERFAMILY | 277 | 363 | 87 | 9.09E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Regulation of RNA splicing | Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. |
Expression pattern of LotjaGi4g1v0086400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…