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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0121200 |
| Transcript ID | LotjaGi4g1v0121200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17538994..17544295) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATATGGGTCAACCGCATATGTTCATTCCTGCAAATTTCACGCTCCAAATGTCCATATGTCCAGCACTCACCGTGA GGGGTGGGTTGAGAAGTCTCACATTAACTAGAGATATGGCCAAAATAGTCCTTATAAAGGGTTAAGATGGGTATACAATG TGGAGTCCTAGAGGGAGGTTATGAAGGAAGGTTATCAATATTCAAGGGTAAAATAGCATTTTCATGATTTAATTACATGA TCAGTTTTTCTTTCCATTCCTTTCCACCCAATTTGGGAGGGAGCAAATTTAAAGGAAAACAATGGAGCATGATGGAACTT GAACCATTACTTACCATGGCTTCCATCATATTTTAAACAAAACAAACAATGGAACCCTATCTCCCTCCACTCCACTCCAT CCCCCTCCCTCAATCCAAACAAAGCCTTAGTTGAGTATAATAATGTATTCAGTAAATAACTAAATACACCCTTAGTTTCA CCAAGTGTAGACCCTTCACTCTTCAGCCGCGCCACCCCACCGCACAATCTTCAGTAACCAGACTCTAGAGTCCACGAACA CTACCGTCGCCGTCTCAGACCACCGTACTTTCGCCGTGCTGAACTCTCGTCGGTTTCGCAACCACCGTCCTCTCTCCGTG CTGGAGCACTGTTGGCGTCGAAGGCTTGCTGCAAGCAAGAGGTCTATTTCTCTCTCATTCAAAGGTTATATTTGTTCCTC TCACATTTTCCTTCAAATTTCTTCTGTTTCTTCATCAGTGTCATGGTGTTTCTCCACTATTACCGTTCAGGAATCTTAAT TTTGTTTGTACAGAAAATGGCAGAGAAATAATCCTTTTAGTTGAATTAGGTTTTCTTTTACAACTTTTATTAGTTTTATG TGTTCAATTGTAGATAGGTTTTGGGAAAAATTAATTGGCTTCTTCTCTTGTAGCAATTTAGTTCCTGCTTATATATTTTG ATATAAGCTACACTAATTGAAGCAATGTTATTGTACTAACAAGGGGTGGTAGAAAATTTCTACTGGGCGAGGATTTTGGG TTGGTAAAAACAAGGGGTGGGGTGAAGGAATTGGGGGTGAAGGCTACCAGGTGTGATAGGAAGCAATTCATAATGGTATC CTTTTGGAAACCAGTAGTTTGATGAGGTGGATTGAAAGCTCAAATTAGAAGGAATTGTTGTTAATTTGGTGTCAAGATGA GGATTCAAAAATCAGTTGGTCTTACTGTGGGTCTTGTCAGCATTTTAAACTTTACAAGATAGTATTGTCATTGTGAATAT TGTGCATCTGAGATGTATTCCTTTTTTTGGGCTGATTTGATTTGCTTCTAAACCGGCTTTCTGTAAATATTATGTATCTG ACAAAAAAGGGGGTCTTTATGTTAAATAGGCTTTTAGATAGGCTAGTAGGCCAGGCCGTCTAAAAGACTAGGCCTTTGAA TTTGGCCTACTACAGGCTTGGGCCGCAAAATTAGAATGCATGCCAGGCTTGGGCCGCGCAAAGCCTGTCCTAGCCTATTT CCACCCGTAGGTTTGCTTAATAACATGAACTTAGTTATCATGATTTGTTGTCAAAGCAGTTGTCTGACACCATTTCAAGG CAAGTTATAATCATTCATGTCTCTTGCTCAGGTTCAGTTACTTCGGATGATGCAAGAAGCTACCTTTCCCAAAGTCACTC CACCTTTTTTACTAGAATAGAAAAAGCAAGCAAGAGAAAAATAATAAAATAAAACTAGAACTTGTTAGGTTTGGCTCTTG GATATAAAGGAAGATTTTGATAATATCTGTGCATAATTTGTTTCTTTGAACTCTCTACCGAAGACAGTTCACCCACATTT GTATCAGTCATACTTCATACAAATGTTTTCACTTTTGATGAGGATGTGCATATGTGATTGTGTCTGCTGCCTCGAGAGCT CATTTTTGGACATATTCTTATTAAAAAGTGCCCATAATTATTGATGTTTACTATGATCATTAGTGAATGAACTTTTAGCT GAAAAGTCTGTTGTTTAAAGTGGTTATGGATCAGATAATTCCCCACTCTCGGTTGTTAATTTTTTCATATGATGATTTGT CGCCTCCTTTTTTATGGACATGGGCTTGTATTTGTATATGTCTATGCCAACCTTCACGGTGATCAATAATCTGGGTGGCA CTTGTCTGTTAAATTGGGTTTCAATTGAATTTAAACTATCCTATGTTTTATGACTTTTGTTTTCTTGCAGTTCTGGAATG ATTGATTTGAAAGAATTGTCCTTGGTCAGTGGGAAAGCTGCATGGATGGCTTACTTGGTAAGCATTTATATTGACTGCAT TTATCAAATGTCTCTTATCAACCATAGAAAGATGCATAGTACTTGAAGTCTCGAACTTTGGTGCTGGGTACCCTATCTTT GTTTGCTTTGATTGTGTAGTTATCAATCTATTGAATATATAATGCTGTCTTCTTTATTATACAGGATGTCTATTGTTTGG ATGCTGATGGTGCTCTTTTTGATGCTGCTTTACTTTCTGCAGCTGCTGCCTTATCTCATCGTAAGTGGTACATCTTTAGT CCTATTATGAATCATTCAGAAGATAGATCATTCTTGCCTAAAGCCACTGTAAAATAATACTTCCCAACTTTATGAATTGT TTCTTTAAATCACATAAAGAAATGTATGGCAATCTTAACAAATACATTCCAATTGGGAGATCTCAATAATAATATTAGGA GTGATACGGTGAGTTGGAGACCTTAAAATGGGCCCTGGTTGGACCCCCCCCCCCTCTCGTTTCATCCATGCTGTTAAACA TCTGCACAAGTTGAATGTTTAGACTTTAGAGGGGGGGGGGTGGAGTATTGGTAGGTATAGTTAGTTAATTGAATAGTAGT TAGTTGGTTAAGGTGTGCTACCTATAAATAGGAAGAGGGGTGAGAGGGAGAACTGGCTGTTCATTTCATTGTAACCAGCT CCATCTAGTGGGAAATCGCTTTTGGTAGTTGTTTTTGTTTCAATTTCTTTGATTAGATTGGTGAGATAAAAGAAGGAAAA AATACCAAATCTTTGAGTTGTGTGATCAATGGTATGAATCACACTGATTCATGTATGTATTGCACAATTTAAAGTCATTT GTGATTCATCATGTTAGGACCCCATTGCAAGGTATGGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGGT TTATAATTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCACATCACATGATAAA ACTGGCATGGACAATTTTCACAATTCACTGGCTTGCTGACTCATATTAAACTGTGCGATTTGAATCATGAACTGTTCTTG CAATTGCTTGAATTTGCAAAAGGTAACCCTTTCTTTCAATTTTCTCACATTCTGCATTTGATAGCCTTTTAAATCCTATA TTCCCAGCATCAGAATAGAATTGGGTTTGGTCTGTAGTTCTGTGAAAGCATTTAGACCACTGCCTTATTCCACTCCTCCA CTGATTGGGCCTTGTTCACTAATTAAATTTCAAAGTCAGCCCACACTATGTAATTTCACTTCTGCCTTAATATCTCATTG AGCCCATTCATAAATATTCCCTTCAATATCTTCTTAATGTGATCCAATGGTCGTGTAAGCATTTTGAATTGTTCCCATTG TTCTACTGTTGTATTAGATTGTTACAAATCCAGCAAGAACTCCTGCTTTTGTGCTAGAGATGGCTGACACGGGTGGCAAC AATCTTTGCCGTAAACTCTCCCACCCCCACACAATGTCACATTCAGAATATTATGCCATTGTTCAGTCTATGTAAATGTA ACCAATCCTTCCTAGTGGGAAAAGACTATTTGTTCTATTATCTTTAGCAATGGTGTATAATGAGTTATCGAGACCACTAA AATTATTGAAAAAAGGCCTTTCTAAAGTTTTTGGATGACTTCAAACCGTTTTTGTTGAGAAGTCCTACATTAACTAAAGA TATGAGGATCAATCTTGTAAGCTAGCTTTTCAGGTAAAGTTAAGCCTAACCCAAATTTTAAGAGTTTTATTCTGAAGTTT TGGTCCTTAAATCTTTCTTTCATAATACTGAGTCTAGTTTTATTTTGAATTTTGTTGACAGTGCAAATTCCTCATGTTGC TATAAACGATGACGGCAAAATAGTACTCGTGTCTGATGAAGATGGACAAAAGCAGGCACAAGAGCTGGTTAATAAGGAAA AGAGGAAGCTTACACTAAGAAACATTCCATTCTCATTAACATGCATACTTTACAAAAATTACATCTTGGCAGATCCTACT GCAGAAGAAGAATCCATTATGGAAACCCATATGACTATAGTTTTGAATACATCTGGTCAACTTATATCTCTTTACAAGCC TGGCGGGCCAGTTCTTGCCTATACTTCTGCTCTCCAGGTTAGTTTGCATATGGTATTACAGTTATAGCATTAACATTATT TGCCTCATTTTGGATTAGCATGCTAATGAAATAATGAGCACTTTTGCTCATAGAAACTTCATCAAATTTTGATTTAGCAT TAGAAATTGGGTGTTTTTGGGATAGAGTTAGTCCTCTTGGTATCAGAACCTATCGTAGACTACGAAACATTGAAAATAGG GTATCAGGGTATGAGTTTTGTAATTTAAAATTGAAGATTCACATTCTTCTTGAAATGCTTAAATGAAAAAAAGTTCATCA AAATTCAAGATCTAAAAAATTGAATGATTGAAAATATCTCTTAAAATTAACAAATTTGTGACTCTCGAATATCCAACAGA TTTATTAATTTTTTATAAAGTATTTTATTTTTCTTGGACAAATAAGAAATGAAAGTAAACCAAATATATAGTATCGTAAT GAATCATTTACTAAATTGAATGATAGCGATGGTACCTTTATGTTGGATCGAATTATACAGATGGGAAGTTAACAACCATT GTTATTGTGGTTTCAGGACTGTGTTCCATTGACCAGGCAAAGAGTTAAAGAACTTAAGAGCTTCTTAGACAAAGAAAATT CTGCTGCTATGGAGGTTGAGTAGAATAATAAATTAATCCTCATTGTTTTGAGTTTCAACAATATCTTCATTGTTTTGGGT GATTAACTTAAAACATCTGTACATTCTGAATTATGGTGTTTGGTAACTAATCAACTTCAATTAAGATTTAAATTACACTA TCCTCTATGGATTAGCTCAATTGGTAAGAGTGTTATGGGACATATGGGTTGGGGTGGGGAGGTCCATTGATCAATTCCTA GAGGGTGCAATTTATATTTCCG
CDS sequence (LotjaGi4g1v0121200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGGAAAGCTGCATGGATGGCTTACTTGGATGTCTATTGTTTGGATGC TGATGGTGCTCTTTTTGATGCTGCTTTACTTTCTGCAGCTGCTGCCTTATCTCATCTGCAAATTCCTCATGTTGCTATAA ACGATGACGGCAAAATAGTACTCGTGTCTGATGAAGATGGACAAAAGCAGGCACAAGAGCTGGTTAATAAGGAAAAGAGG AAGCTTACACTAAGAAACATTCCATTCTCATTAACATGCATACTTTACAAAAATTACATCTTGGCAGATCCTACTGCAGA AGAAGAATCCATTATGGAAACCCATATGACTATAGTTTTGAATACATCTGGTCAACTTATATCTCTTTACAAGCCTGGCG GGCCAGTTCTTGCCTATACTTCTGCTCTCCAGGACTGTGTTCCATTGACCAGGCAAAGAGTTAAAGAACTTAAGAGCTTC TTAGACAAAGAAAATTCTGCTGCTATGGAGGTTGAGTAG
Protein sequence (LotjaGi4g1v0121200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIDLKELSLVSGKAAWMAYLDVYCLDADGALFDAALLSAAAALSHLQIPHVAINDDGKIVLVSDEDGQKQAQELVNKEKR KLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTIVLNTSGQLISLYKPGGPVLAYTSALQDCVPLTRQRVKELKSF LDKENSAAMEVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 163 | 163 | 1.9E-64 | – | |
| SUPERFAMILY | 1 | 110 | 110 | 2.86E-15 | ||
| Gene3D | 1 | 172 | 172 | 6.4E-40 | ||
| PANTHER | 1 | 163 | 163 | 1.9E-64 | ||
| Pfam | 7 | 49 | 43 | 2.4E-5 | ||
| SUPERFAMILY | 82 | 165 | 84 | 1.13E-20 | ||
| Pfam | 88 | 134 | 47 | 3.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Biological process | RNA catabolic process | The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
Expression pattern of LotjaGi4g1v0121200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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