Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0169100 |
| Transcript ID | LotjaGi4g1v0169100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin; TAIR: AT5G46860.1 Syntaxin/t-SNARE family protein; Swiss-Prot: sp|P93654|SYP22_ARATH Syntaxin-22; TrEMBL-Plants: tr|I3SK89|I3SK89_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0169100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32499378..32504935) extracted from Lotus japonicus Gifu genome v1.2.
CGCCACCAGAACAGATGCTAGAGTATCCCCCTATCAAAACCCGCCACGTGCTCCGAATGGGTCCATGTCAACGTAGCGGT ATGGAATTACAACCAAGAGATGCATAGAGACAGACAGAGAGACCCACCACCGAAGAAAGTAACGAAACCAAATCTTCTTT CCTTTCCTTCTCTTCACGCCCTAATTCCCAAATCCGATCCCGGTAAACGCCACCACCACCACCACCACCACCTTCGATTC CTTCCCTTTCTCAGGAAAATTCCCCTGATTTTCTCGGGAAAGTTAGGGTAAATCCGCCGAATTACAACAGAATTATGAGC TTCCAGGACATCGAAGCTGGCCGCCCTTTCGGGTCGAGGTGTGGACCGATCAACGGGAAGCAGGACCCTACGCAAGCGGT GGCGGCCGGAATTTTCCAGATCAACACCGCCGTGTCCACGTTTCAGAGACTCGTCAACACCCTCGGAACCCCTAAAGATA CCCCTGAGCTCCGTGAGAAGCTGTTAGTTTTTTTGTCTTTTCTCTATTTCTTTTGATTCTGTAATGGTGATTGTTTAATA ATTGGCACTCATTGATCAAAATTGAGTTTTTTTTAAGTCAATTGCCCTTCGAATTACCTCTATGTTGCTTAGGGTGTCTT GATTTTGAATCATAAATATACTCATATGTTTAAAGGAGGAAACTGCTTGCGTGGGGCGAATTATTGTGCTTTCTTTTACA GCTAAATTTTAGGGGGTTTGGTGTTTAGTGGTTTGGCCGATAACAGTGTGAGGGTGTGGAGGAGAGGGGTTGGGAAGAGG TATGCGTGCGAAGCGGATGCTATTTTGAAAGCTGTGATTGCTGTTGTTTAATAAGTCTGGCAGTGTTGGAAGGTCATGGG CGGCCAGTGAAGTGCTTGGCTGTGGCGGTTGACTCCAATAATGTTGGTGGTCCTGGTGGTGATAATGAAAATAGTAGTAG TTCTTATCTAGTTTACAGTGGTACTCTAGATTATGACATTAATGTTTGGAGAATACGCGTTCCATTGCTTTGATTGTTTT GTTATTTTAGAGAGAATCTCTACTGTAATTGCCACTGTGCTTTCACTCGTCAGAGTCAGTTGCCGGATAATTCTGTTGTG AATACTTTGATTGGGGCCCTCTGGTTGCTTATTTAGTTGTGATTAAGCTGTAGTAGTAAATATCCTAAGTTTTTATGGTA GGAACAGGACATGCTGTGTTTTAGAGTATATGATGAATGCCCCCTTTACTTATAATCTCATGTATAAAAAGAAACTTGCT GGATGCCGGTGGCGCTCATGATAAGAAGATAACTTTTTTCGGCCTCGGCCTCACAAACTTCAGTCCTATCCTATGCCCTT TGTATATGAAGTCTTAATTTAGTCGATTAATTCTAAACATTGTGGACAACAAAAACCTTATGTGACTTCTACCTCTAGGC TCTTACCATGTTATTTTTCCATCTTGCAGTCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAA ACTTAAGCAAGCTAGTGACATCGATCACCATGTTGAAGTTAATGTAAGTTTGGACCTTTATCTTGTTATGTGCTTTATTT GGATAATCAAAGAAGTTTATATGGTCTCAGACTTTATATTGATCGGATTCTGAAATGCATTAACTTCTTTCAAAACTGTA TATTTTTCTACTGGAATTCTTGCTTTCCCTTTTACTGATTTGTTAATGTTGTAATTGTTTGCATTCTATTTTAGTAAATA CTGCAAAGGTTTTTTATAGACTTAGTTATATAATATATTGTAAATTGTATGAAGTATTTTATGGTATCATGACCTTCAGT GTCCTTACCTTGACAAAATATTCTCGTGTTTTCAGGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAG GCAGTGCTGAAAGAGTTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAAACGGCCTATACCCCTTTTGTTCCACAAGC TGTTCTTCCTTCGAGGTGATTTATCAATTGTTATTGTAGTTTGTAAAAGTGAAGGGGAAAGACTGTGCCTTTCTTTGTTT TAGGTTGTGTGACTTTGGTAAAATGTGAACTGACTCTTAACATGGAGCGTAGTCTATTATAGAATTCTACAGTTTGATTT GTATGCACTTGTATTTTTATGATTAATTTTGCATTTTTTAGATTCAGTCAGTGCTTTGTTGTTAATAATTATGATTATGA TTACTTTTGCGTACAAGGGTTATAACATAGGCTTTTCTTTTTATCTTGCAGCTATACAGCTAGCGAAGTAGATATTGGTT CTGATAAAACTCCAGAGCAGCGCGCCCTTCTTGTGGAATCCAGGAGGTGATTTCTCATATATTACTGATGATAATCAATG ATTTACGGATTCATTTACATGAGATTATTGCATTGTTTCTGATAAGAGATTCTGCCCACTCTGAAATTTGGGGGTATTAT CATAAATTGAAAATGGTATATGGTCTGTCAAACTGCACTTGAAATGTAATCCTAGGTCAAATATTAGTTTTAGTAATTTG AAAATCTATATCTTAGGCCAAAACATGTTAATGCCAAAACTTAATTAATTTCATTTTTCTTTTTGGTAGTTCAATGGAGT TGACATCACAAATTGATCCATGCTGGTTTGTTAAATTTGATGGAAAATTGAACGTGACTCAAAGTACAACAACCAAGCCT TTTCCCACTAAGTGGGGTTAGCTACATGGAGCCCACATACCATAATGTCCTGTCATGTATTAAGTTCAAATAACCATTTA CCTCTAAATATCTTTTAGTCGCTTGGCTTATAGTTTTCTTGGTATCTCTATATCTAACTATTTGACCATCCTCCATTCCT TTCATTTGGTCACCCCTTCTTACCAGTGCTTTTATGGTTTTTCTCCATACATGCTGATGCTCAAACCACGCAAGACGAGA CTATATCATATTTTTTAAGAATATATTTTCTATCTAATTCAACCTGTTGCATGCAGACCGCAGTACCCTCAGCCCTTGCA TATTCATGTTCAAAGTATTGCTACGCTGAAATGAATTAATGCCAAAAGCTCTGTATTATTTCTTTTCAATTAATAAGTGG TGCAATGGAGTTGATCATACAATCAATGGCAGGAATCTCCTATATGTCACTGAATTAGATGACCAACTGAATTTTTCTTT TATGCAATCACGAAAGGATACTTTTCAAATTCAGCATATTATATTATCGTAGTACTTCAGCTCTTCCATTATTGATTCTG CAGGCAGGAGGTTTTATTCTTGGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCATG AAATACAGCAGCAAATTGGTGAAGTTAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGCCATGATT GGTAACTTACTTCGTCCTCTTTAGTTTTTACTGGTTACTTGCATCTTTTTATTGCTTTCTTCATTTATTTTTCTGTACCT GTGCATGTTATGTGATATCTCAAATTTTCATTTTGCAGATGATATTGGGTCCAACATTGAAAACTCACATGCAGCAACTG CACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAATTCATCTTTGGTAATATATAAATTTTCTTAC TGCAGCCGTATTACTTTTTGCAAGTTTCTGATCCCACTTGGTAGAAAAAGGCTTTGATCGTGGTTTTTGTCTACCATCTT GATCTTTCGTCACATCTTTTTACTTGTTTTCCTTTTAAAGCTTAGCATATTTTCCTTTGTTAATCTTTTGTTTGCTTTTT CTCTTTTTAAGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAGTCA AAGGTTGTCATCATTCTGTTATGGAGCAAATCCATTTATAAAAAGAGCAGCAGATATATCTGATTTCAGTGCATGTGGTA ATTCCATAAGCGTATGGTTATTTTGTTGTGGGGTGTTAATGTTCTTGAGTTGGTGTTTGGGGTTCTAAGGATGTGTCGGG ACTTATGGTGTAAGTTCTCTTCTGGTTTCTTTAATATCAAAATATAATAATTCTTTTATTTTCCCTCAACTTGTAAATGC AACACTAAAATTGGCTGGGCTGACTCTTCTTGAGCAAGACCTTGATTTATGACAATCTGTTTTCTTTTTTAACTAGCATT CATTTACTAAGCTTAAAGCTTCAGGTTTGAAGGTAGGTTGAAGGCAGTGTATGGAAAGTGAGTAATTAATATTTTTACTT TGTTATTTTCATGCTGAGTGATCTTGTTCGTCCCTCTGTCCATAACTGAAAATGTGATGAGAAATGCAAGCAACACTCAC GGTAACACTTTTTTTCAGCGCTTTTTTAGTGGTTGAAATTTATGTGAGTCCTACTAAATTTGAAGTGAGACAATTTTGAG TGGAGCATTTTGGAAAGTGTAAAAGTAAGTGTTATAGCATTTTTCAAAATCAAAATCAAAAGATTAATAAGTTATGGAAT ATGGAGTAGTAGTCTTGCTTATCTTAGAGGTGGAATCTAGAGAACATGTGATCTTTTAAGAGTTTCCTGGCAATTTCTGC CAGGTACAGTCCGAGGTAAACTCTGACAAAGTGGTAGTATGTAAATGTCTTCTTTTAGTAGTTTATCGCTTTATCTACAT TCTTGTTTTCTTCTTTTAAGTTTCCTTGCACGATGTTTTGGCAGCATCTAGTATATTCCTGACAGCATTCTCTTGGTATT TAGTATTTACTTTGTCTCTGTTTAGTGTTTGATTAGATTATGATTATGAGAGGCATTTGTTGCAGTTTTTTCTTTGAAAA AGTAGTATATTTAATTACATCATAATTTTTAAAACTTTTAGGTGTCCCAGCTTTTACAATAGGCATTATGTTTTAAAATT TTGAAAACGGATCATGTGAATAAGCTACGTTGATCAGCTTATTAATAAAAGCTATTGTGATATAAGAGAGGCAAAATAAA AATTATTTTTTTGTTAGTTCAACCAAACACAAATTAGCATATCTTTTTTTTAATATTTCTAAATAAGAATCTTTTTTTAT AAAAGGTAAATCATTTTTTATAATTTTAAACAAATGCAATGTATATCATAAAGGAACTGACAAAGAATCAATTGGATAAA AAACATTGGTGTTAAAAGATGCAAAAAATTTGGTAATTTTTTTTTTCAAAAAGTATTTATTGAATGATGAAAATGTATAG ATCGAAGTCCTTTTACTTGCAAAACCTAGCAAAAGAAGAAAAACCAAACAAAGTCCTCTCGCCTAAACAAACTCCAAACA AACGAAAGAAAGTTACAACAGATTTTGAAAACATGTTGTATCAAACAGGTTTTCAAAAAGTGAAAACTATTTTAAAAACT GCAAATAAACAGGCCCTCAATATTGGAAAATCTAATATTAGATTTAGAATTGAAAAATTATTTTAGCTTACATGAAAAAT AAAAAAACTACGTGGAAATGATGACAAGGAAAAATTCG
CDS sequence (LotjaGi4g1v0169100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCCAGGACATCGAAGCTGGCCGCCCTTTCGGGTCGAGGTGTGGACCGATCAACGGGAAGCAGGACCCTACGCA AGCGGTGGCGGCCGGAATTTTCCAGATCAACACCGCCGTGTCCACGTTTCAGAGACTCGTCAACACCCTCGGAACCCCTA AAGATACCCCTGAGCTCCGTGAGAAGCTTCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAA CTTAAGCAAGCTAGTGACATCGATCACCATGTTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGA TTTTCAGGCAGTGCTGAAAGAGTTTCAGAAGGCACAGCGTCTTGCAGCTGAGAGGGAAACGGCCTATACCCCTTTTGTTC CACAAGCTGTTCTTCCTTCGAGCTATACAGCTAGCGAAGTAGATATTGGTTCTGATAAAACTCCAGAGCAGCGCGCCCTT CTTGTGGAATCCAGGAGGCAGGAGGTTTTATTCTTGGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGA GCAAGGCATTCATGAAATACAGCAGCAAATTGGTGAAGTTAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGC AAGGAGCCATGATTGATGATATTGGGTCCAACATTGAAAACTCACATGCAGCAACTGCACAAGCAAAATCTCAACTTGCA AAAGCTTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATCGT GATCATAGTTCTTGCTGCTTAG
Protein sequence (LotjaGi4g1v0169100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFQDIEAGRPFGSRCGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAK LKQASDIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDIGSDKTPEQRAL LVESRRQEVLFLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLA KASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 251 | 251 | - | – | |
| PANTHER | 9 | 270 | 262 | 1.3E-153 | – | |
| PANTHER | 9 | 270 | 262 | 1.3E-153 | – | |
| SMART | 14 | 127 | 114 | 2.8E-24 | ||
| Gene3D | 21 | 132 | 112 | 1.2E-37 | – | |
| SUPERFAMILY | 23 | 235 | 213 | 5.89E-41 | ||
| CDD | 23 | 148 | 126 | 1.02977E-27 | ||
| Pfam | 30 | 129 | 100 | 6.7E-30 | ||
| Gene3D | 172 | 273 | 102 | 8.3E-27 | – | |
| SMART | 175 | 242 | 68 | 1.6E-18 | ||
| ProSiteProfiles | 180 | 242 | 63 | 18.061 | ||
| CDD | 183 | 241 | 59 | 4.15707E-24 | – | |
| ProSitePatterns | 186 | 225 | 40 | - | ||
| Pfam | 217 | 268 | 52 | 7.0E-16 | ||
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 252 | 272 | 21 | - | – | |
| Phobius | 273 | 273 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0169100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…