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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0178300 |
| Transcript ID | LotjaGi4g1v0178300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial; TrEMBL-Plants: tr|A0A0R0IUH4|A0A0R0IUH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0178300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:36441248..36445755) extracted from Lotus japonicus Gifu genome v1.2.
CAAAACCCACTGGTCGCAGTTTCCCAAATTGAAGACGAAAAATTATGAGAGAAAGCGCGACCTCATTTACTGTACTAGAA CTAGAATTGATTTCAAACGTTCTCGTGTAATGGGGATTTTCCTCTCACACATGAATGAAGCGAAGCGCTATCTCCTCCTA TTTCTTCCATCGTGCAATGGGTTCCATCACCCCAACATGTTCGATCGCCAGGTTCTCATATTCTTCTACTTCTTCTTCGG GTTGTTCAACATCAACAGTTACCAGACCATTCCCTGATTACTCCCCTCGAAAGCCTTCCATCGCCGACGCTGACCTCGTC CGCCACGTCTCCACCACCATCAAACGGCGCCGTTCCGAGCCTCTCCGCCGCGTTCTCAAGCCTTTCGAGTCGAAGCTCAA CCCTCATCATCTCATTTGGGTCCTCATCAACATAAAAAACGACTATGTCCTCGTCTTGGATTTCTTCAACTGGGCACGTT CACGCAGGGACAAGCCTTCCTTGGAAGCGCTTTGCATCGTGCTTCACATTGCTGTGGCATCCAACGACCTCAAAATGGCG CAAACCCTGGTTTTTGAGTTTTGGGCTACGCCCCGTTTGGATGTACATCACCTGTTTGATCAATTTACTGAGAGATTGAT ATACACTTACAAGGACTGGGGCGCACACCCCCTTGTATTTGATGTGTTCTTCCAGGTGCTTGTTGAAGCTGGGTTGCTTC TGGAAGCTGAAAAATTGTTTCATAAGTTGTTAAGTTACGGTATTGTTGTCTCTGTAGATTCTTGTAATTTGTTTCTGACC AGGCTGTGTGGCAATTTTGAGGGAAAAAAGAGGGCGATTCGGGTGTTCAGAGAGTACCCAGAAGTGGGTGTTTCTTGGAA CACCATGTCATATAATATTGTTCTTCATTCCCTTTGTCAGTTGGGCAAGGTTAAAGAAGCACATAATTTGCTCATGCAGA TGGAGTTTTGTGGAAATGTCCCTGATGTTGTAAGTTATGGCGTTATAATTAGTGGGTATTGTCAAATTGGACAGCTAGAA AAGGTCTTGAAACTTATGGAGGAGTTGCAGAGGAAGGGATTGAGACCAAATGAATATGTTTATAATAACATAATTGACCT TCTTTGTAAGAATGGTGAAGTAGTTGAAGCAGAGAGAGTCTTGAGGGAGATGACTAAGCACGGGGTTTTTCCTGATAATG TAGTTTATACAACTCTCATCAGTGGTTTCTGCAAGTCTGGGAATGTTTCAGCTGCACACAAACTATTTGATGAAATGAAG CAAAAGAAAATAGTTCCTGATTTTGTGTCATATACTTCCATGCTTCATGGGCTTTGTAAAATTGGAAAGATGGTAGAAGC ACACAAACTGTTTAGTGAAATGTTGGTGATGGGGTTGGAACCAGATGAAGTTACTTATACTGCGCTTATTTATGGGCATT GTAAGGCTGGGGAAATGAGAGAAGCTTTTTCTATTCACAACCAGATGGTTCAGAAAGGTCTGACTCCAAATGTTGTCACC TATACTATATTAGTTGATGGCCTGTGTAAGCGTGGAGAGGTAGATGTAGCCAATGAGCTTCTTCATGAAATGGCTGGCAA GGGCCTTCAACCAAACGTTTGCACATATAACACAATTATCAATGGTCTTTGTAAGGTAGGAAATATAGTGCAAGCAGTAA AACTCATGGAAGAAATGGATCTGGCAGGGTTTTATCCCGACACTATTACATACACTACACTCATGGATGCGTATTGTAAA ATGAGGGAAATGGCTAAGGCTCATGAGCTGCTGCTGATTATGCTTGATAAAGGACTTCAACCTACAATTGTTACATTCAA TGTACTAATAAATGGGTTTTGCTTGTCAGGGATGTTGGAAGATGGTGAAAGACTAATCAAATGGATGTTAGATAAAGGTA TAATGCCAAATGCCACAACATTCAATTCTCTTATGAAGCAGTACTGCATTAGAAATAACATGCGTGCCACTACTGAGATT TATAAGGGTATGCATGCTCGAGGAGTGATGCCTGACAGTAACACCTATAATATTCTGATTAAAGGGCATTGTAAATCAAG AAATATGAAAGAAGCATGGTTTCTGCAGAAAGAAATGGTTGAAAAAGGCTTTAGTCTCACTGCTTCTTCCTACAATGCTC TTATAAAAGTTTTCTATAAGAGGAAGAAATTTGGTGAGGCTAGGAAGCTATTCGAGGAGATGAGAACACAAGGGTTGGTT GCAGAAAAGGAGATATATGATATTTTCGTTGATGTAAACTATGAAGAAGGGAACTGGGAAATCACTCTTCAGCTTTGTGA TGAAGCAATAGAGAAATGTCTTGTTGAAAAGACTTAGTGCACTTTTGTCCCGATGCAGTTTATGATGGAATTATCAGGGG CATTAATTGTTGCCTTGCCTCTGATTCATATTTCTTGGTGGTTCAGTTGAAAATAACATGCACATCATGACACCATTTTT TCATATCATTGAAAAAGTGACACTAGACTTCCAGGTATTTTGCCAGAAAAAGCTGATCATCACACAAACACACACACATG CTGAGGAGAGTAGTAACATCCTCAAAGTCAGAAAGACACTTAAAATATTTTCTCAGGATATTGTGCTAAGGTTGTGCAAG ATAGAGTGAGTTAGCCTGTATTCCTTTGCGTGCAACAGTACAAGAAACAATGTAATGGAGTTTTTTGTCTCCCCTTTAAT TGAAAGATGTGGGTAGAGATTTTAAATGTGACAAAAATTTGACAAAAATTTGACTTGCTTTGCTTGAATCTGTGAAAACA AGTTCTGGTTAATTTAGAGCACGGAAAAAATTAGTTTCGAGGAAATTTGTTGTAACTAAGTGATTAAATAATATGCCTGA GATATTAACCTGAATTTTATACAGAAGTTTAGTTTTATTTAAGAATAATGGTACACTAATTGGCAACTGCAAAATGACAA ATAAATTTCCTCCTGAAAATAAGAACATTGATGTCATGGAGCTAAGAACATTGTCCTCCTGAAAATAACCTGAAGCAGTC ACAACTACACTAGCGCACTTGATGACATTAGTTTTTAGTTTTCTTACTTTCGTCTTTATATCTAAGGTTTATACTTAGTC GTGTTTGGTTTTCTAATTTTTTTTTTTCCTGTCTGGGTACTAATAATTTCTATCATGGCAGCAAAGATATATCCATCTTA TGGTGTTTCTGTTAACCTTTTCTATCATAGTTCTCAACTATGAACATTTTTCTTACAATTTTCCAAATGATACTTGCAGA AGAAAAAACTTAAGGAGAAAGTGATTACATAAAACATTATCTCTCAACGCTCATTTTCTCTGGAGATACGGCTATGACAC CGTCAAGGAAAACTCATGTATGCTTGTTTCTCAGAACTTTTGTATATATTACATGTTCATTATTTTCAATTCTTTACCGT CAACTTCAATATTTATCTATTTTGTCATGTTAATATTCTTTGAGGGACTAATTACAGCTTATTATATTGTGCCAGACCTA TCGACTTTTGCCAGCGGTTGTGTCGTTGGAACCTTGAAGGCCCAAGGCTAGAGGGTTGACTCATCAGTCCGTTCAGCCGC CTAAGGTGATGTTCCTGGATAAAATAGCCGGTTGAAAAGGTGACATGTTGGTGGCTTTAGTTACTACTGATCCTCTCAAA AGTGATGCTTATATGCTAGTGAAGAGTGAAATTTCTCTGATAGTAAAACTGAAATCAATATAATGGTAGGAGGTGGCCTT TGGTACTCCAGTGTCCACCTCTAAGCATTCTAGTTTTTCTGATATTTGAGTATCCATGTGCGAAGCATATTAATGGTATG AATTTACATCACTGATATCTCAAACTCGTCTCTGGGACCCAGTTTTGGAAATTACAGCCGCTTTATCTGATTTAGTTGTC AATTGGAAAGCCTGCTAATGATTGAGTGCTACTTTGGCTGAATTGGTGAATTCTGGTGCTGGTGTTCTAGAAAGGTTCTG GTAGGGTTTGCTCAATTTTTGTCTGCTTTGATCCTTTTGTTAAACCTCTAGCATTTCATATGATATTGACTCAATTAGTA GTGAACATCGAAAAATGCTTATAGCAGATTCATGTTTCTAAATGTTGACAAACTTTGCAGAGTAACGGATAGAGAAAGGA AGTGTTTTATCGAGTCCCCAGGAATCCTGACTGCTCTGAACAGTGTGAAATTACTTCTGAGATGAATCAGGCAGTAAAGA GATTTTCTGTAGGACTTTTATATGATAGCTCTTGTAGTAATTATGTAAAGGGAAACAGAAGTACGCTGCCGATGTGAACT GGATTATGCATTATGTAAGATAAATGAATTTGTTAGATTTTGACATTTTGTAACCTATAGTTGTCATTTCTGGTATAATT GATTATAAACTAGATTCTTCCTAACTGTTGGAGATGAAGTGTCATTTCTGGTATTGTTTCCGATTGAGCCTGCACATTTT CGCTCCATCTCTGGCTGAACCGTAGGGC
CDS sequence (LotjaGi4g1v0178300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGAAGCGCTATCTCCTCCTATTTCTTCCATCGTGCAATGGGTTCCATCACCCCAACATGTTCGATCGCCAGGTT CTCATATTCTTCTACTTCTTCTTCGGGTTGTTCAACATCAACAGTTACCAGACCATTCCCTGATTACTCCCCTCGAAAGC CTTCCATCGCCGACGCTGACCTCGTCCGCCACGTCTCCACCACCATCAAACGGCGCCGTTCCGAGCCTCTCCGCCGCGTT CTCAAGCCTTTCGAGTCGAAGCTCAACCCTCATCATCTCATTTGGGTCCTCATCAACATAAAAAACGACTATGTCCTCGT CTTGGATTTCTTCAACTGGGCACGTTCACGCAGGGACAAGCCTTCCTTGGAAGCGCTTTGCATCGTGCTTCACATTGCTG TGGCATCCAACGACCTCAAAATGGCGCAAACCCTGGTTTTTGAGTTTTGGGCTACGCCCCGTTTGGATGTACATCACCTG TTTGATCAATTTACTGAGAGATTGATATACACTTACAAGGACTGGGGCGCACACCCCCTTGTATTTGATGTGTTCTTCCA GGTGCTTGTTGAAGCTGGGTTGCTTCTGGAAGCTGAAAAATTGTTTCATAAGTTGTTAAGTTACGGTATTGTTGTCTCTG TAGATTCTTGTAATTTGTTTCTGACCAGGCTGTGTGGCAATTTTGAGGGAAAAAAGAGGGCGATTCGGGTGTTCAGAGAG TACCCAGAAGTGGGTGTTTCTTGGAACACCATGTCATATAATATTGTTCTTCATTCCCTTTGTCAGTTGGGCAAGGTTAA AGAAGCACATAATTTGCTCATGCAGATGGAGTTTTGTGGAAATGTCCCTGATGTTGTAAGTTATGGCGTTATAATTAGTG GGTATTGTCAAATTGGACAGCTAGAAAAGGTCTTGAAACTTATGGAGGAGTTGCAGAGGAAGGGATTGAGACCAAATGAA TATGTTTATAATAACATAATTGACCTTCTTTGTAAGAATGGTGAAGTAGTTGAAGCAGAGAGAGTCTTGAGGGAGATGAC TAAGCACGGGGTTTTTCCTGATAATGTAGTTTATACAACTCTCATCAGTGGTTTCTGCAAGTCTGGGAATGTTTCAGCTG CACACAAACTATTTGATGAAATGAAGCAAAAGAAAATAGTTCCTGATTTTGTGTCATATACTTCCATGCTTCATGGGCTT TGTAAAATTGGAAAGATGGTAGAAGCACACAAACTGTTTAGTGAAATGTTGGTGATGGGGTTGGAACCAGATGAAGTTAC TTATACTGCGCTTATTTATGGGCATTGTAAGGCTGGGGAAATGAGAGAAGCTTTTTCTATTCACAACCAGATGGTTCAGA AAGGTCTGACTCCAAATGTTGTCACCTATACTATATTAGTTGATGGCCTGTGTAAGCGTGGAGAGGTAGATGTAGCCAAT GAGCTTCTTCATGAAATGGCTGGCAAGGGCCTTCAACCAAACGTTTGCACATATAACACAATTATCAATGGTCTTTGTAA GGTAGGAAATATAGTGCAAGCAGTAAAACTCATGGAAGAAATGGATCTGGCAGGGTTTTATCCCGACACTATTACATACA CTACACTCATGGATGCGTATTGTAAAATGAGGGAAATGGCTAAGGCTCATGAGCTGCTGCTGATTATGCTTGATAAAGGA CTTCAACCTACAATTGTTACATTCAATGTACTAATAAATGGGTTTTGCTTGTCAGGGATGTTGGAAGATGGTGAAAGACT AATCAAATGGATGTTAGATAAAGGTATAATGCCAAATGCCACAACATTCAATTCTCTTATGAAGCAGTACTGCATTAGAA ATAACATGCGTGCCACTACTGAGATTTATAAGGGTATGCATGCTCGAGGAGTGATGCCTGACAGTAACACCTATAATATT CTGATTAAAGGGCATTGTAAATCAAGAAATATGAAAGAAGCATGGTTTCTGCAGAAAGAAATGGTTGAAAAAGGCTTTAG TCTCACTGCTTCTTCCTACAATGCTCTTATAAAAGTTTTCTATAAGAGGAAGAAATTTGGTGAGGCTAGGAAGCTATTCG AGGAGATGAGAACACAAGGGTTGGTTGCAGAAAAGGAGATATATGATATTTTCGTTGATGTAAACTATGAAGAAGGGAAC TGGGAAATCACTCTTCAGCTTTGTGATGAAGCAATAGAGAAATGTCTTGTTGAAAAGACTTAG
Protein sequence (LotjaGi4g1v0178300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRSAISSYFFHRAMGSITPTCSIARFSYSSTSSSGCSTSTVTRPFPDYSPRKPSIADADLVRHVSTTIKRRRSEPLRRV LKPFESKLNPHHLIWVLINIKNDYVLVLDFFNWARSRRDKPSLEALCIVLHIAVASNDLKMAQTLVFEFWATPRLDVHHL FDQFTERLIYTYKDWGAHPLVFDVFFQVLVEAGLLLEAEKLFHKLLSYGIVVSVDSCNLFLTRLCGNFEGKKRAIRVFRE YPEVGVSWNTMSYNIVLHSLCQLGKVKEAHNLLMQMEFCGNVPDVVSYGVIISGYCQIGQLEKVLKLMEELQRKGLRPNE YVYNNIIDLLCKNGEVVEAERVLREMTKHGVFPDNVVYTTLISGFCKSGNVSAAHKLFDEMKQKKIVPDFVSYTSMLHGL CKIGKMVEAHKLFSEMLVMGLEPDEVTYTALIYGHCKAGEMREAFSIHNQMVQKGLTPNVVTYTILVDGLCKRGEVDVAN ELLHEMAGKGLQPNVCTYNTIINGLCKVGNIVQAVKLMEEMDLAGFYPDTITYTTLMDAYCKMREMAKAHELLLIMLDKG LQPTIVTFNVLINGFCLSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATTEIYKGMHARGVMPDSNTYNI LIKGHCKSRNMKEAWFLQKEMVEKGFSLTASSYNALIKVFYKRKKFGEARKLFEEMRTQGLVAEKEIYDIFVDVNYEEGN WEITLQLCDEAIEKCLVEKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 740 | 724 | - | – | |
| PANTHER | 163 | 420 | 258 | 2.7E-177 | – | |
| ProSiteProfiles | 178 | 212 | 35 | 7.267 | ||
| Gene3D | 185 | 348 | 164 | 8.8E-39 | ||
| Pfam | 187 | 210 | 24 | 1.3 | ||
| ProSiteProfiles | 213 | 248 | 36 | 5.546 | ||
| Pfam | 249 | 297 | 49 | 1.5E-12 | ||
| ProSiteProfiles | 249 | 283 | 35 | 11.126 | ||
| TIGRFAM | 252 | 285 | 34 | 8.5E-7 | ||
| SUPERFAMILY | 259 | 695 | 437 | 4.63E-5 | ||
| ProSiteProfiles | 284 | 318 | 35 | 13.066 | ||
| TIGRFAM | 286 | 320 | 35 | 1.3E-7 | ||
| Pfam | 314 | 347 | 34 | 2.4E-10 | ||
| ProSiteProfiles | 319 | 353 | 35 | 12.792 | ||
| TIGRFAM | 321 | 354 | 34 | 1.3E-8 | ||
| PANTHER | 323 | 444 | 122 | 2.7E-177 | – | |
| Gene3D | 349 | 418 | 70 | 2.0E-24 | ||
| Pfam | 353 | 402 | 50 | 8.5E-19 | ||
| ProSiteProfiles | 354 | 388 | 35 | 13.581 | ||
| TIGRFAM | 356 | 389 | 34 | 2.3E-11 | ||
| ProSiteProfiles | 389 | 423 | 35 | 13.11 | ||
| TIGRFAM | 391 | 425 | 35 | 1.2E-9 | ||
| PANTHER | 409 | 551 | 143 | 2.7E-177 | – | |
| Gene3D | 419 | 488 | 70 | 8.5E-26 | ||
| Pfam | 423 | 472 | 50 | 3.1E-19 | ||
| ProSiteProfiles | 424 | 458 | 35 | 13.493 | ||
| TIGRFAM | 426 | 460 | 35 | 9.2E-10 | ||
| SUPERFAMILY | 436 | 702 | 267 | 1.41E-5 | – | |
| ProSiteProfiles | 459 | 493 | 35 | 12.934 | ||
| TIGRFAM | 461 | 495 | 35 | 1.8E-8 | ||
| Pfam | 493 | 542 | 50 | 1.2E-17 | ||
| ProSiteProfiles | 494 | 528 | 35 | 12.2 | ||
| TIGRFAM | 496 | 530 | 35 | 1.2E-9 | ||
| Gene3D | 509 | 616 | 108 | 2.7E-30 | ||
| PANTHER | 525 | 655 | 131 | 2.7E-177 | – | |
| ProSiteProfiles | 529 | 563 | 35 | 12.408 | ||
| TIGRFAM | 531 | 564 | 34 | 1.8E-7 | ||
| Pfam | 563 | 611 | 49 | 9.4E-13 | ||
| ProSiteProfiles | 564 | 598 | 35 | 12.233 | ||
| TIGRFAM | 566 | 600 | 35 | 6.0E-6 | ||
| ProSiteProfiles | 599 | 633 | 35 | 9.997 | ||
| TIGRFAM | 602 | 634 | 33 | 1.8E-4 | ||
| Gene3D | 617 | 739 | 123 | 2.2E-25 | ||
| Pfam | 633 | 678 | 46 | 1.0E-11 | ||
| ProSiteProfiles | 634 | 668 | 35 | 12.189 | ||
| TIGRFAM | 637 | 669 | 33 | 2.5E-8 | ||
| PANTHER | 659 | 731 | 73 | 2.7E-177 | – | |
| ProSiteProfiles | 669 | 703 | 35 | 11.246 | ||
| TIGRFAM | 672 | 702 | 31 | 9.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0178300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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