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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0188300 |
| Transcript ID | LotjaGi4g1v0188300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT4G17950.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q940I0|AHL13_ARATH AT-hook motif nuclear-localized protein 13; TrEMBL-Plants: tr|V7CEI0|V7CEI0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0188300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42905825..42910076) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGTTAGTGTAAGTTTTGAACCCTATGAATCTATGATATAAATAATGGCAAGCAGTTCGTTCGTACAATTTTTCTGCG ATCAAAATCAGGTACGCTTTTGTCTCCTCGGTCTTAGAAAAATCCCACTCACTCATCTTAACTCATTCTCACTCTCTCTC TTCTTCTTCTCTGTTGTTCCTCTTTCTCTCACTTAAAAACAGAGTCACTGTTCACACACACAAACACTGTGTGTTTAACT CTCATCAATCTTCATCGTTTTCTTTCTCTGTTTTTCTCTGATCGCAGGCGGAAGTAGCTGCATTCGCCGGAATGGATTCC CGACCACCGCCACCGCCGCCGAACATGATGACCGCACCAAACTCCTACCCTCCGCCACCACCGACCAACAATTCCTCCCC CATGATCAGCCCTAATTCCAACATCCTGGCCCCTGCAACCGCCCGATTCCCCTTCGGCTCCCCTTCCCCTGCTCCGCCGC AGGCTCCTCCTCCTCCTCCTCCTCCGTCGGAGACTTTCTCGGCCTCCTTCGAAGGTGCCTCTTCCTCCCCCGCGGGTCTT GCCAAGAAGAAGAGGGGTCGGCCGAGGAAATACTCCCCTGATGGCAACATTGCCCTGGGTCTGGCCCCAACTCAGGCGGC CCCGGCCCCCTCCGCCGGCGATTCGGGCTCCGCTGATGCTCCGCCGAAGAAACACAGGGGAAGGCCTCCGGGCTCCGGGA AGAAGCAATTGGATGCGCTTGGTATGTGCTTTGGTCAATTCTGTTTTTTTGTTTTTCTGAGGTTTGATTCTTGTGAATGT AACTGATTGTGAGTGTTTTGTACTTTTGTTGTTTTGTTTCTTTCTTCTTTCATAGGAGCTGGTGGGCTTGGTTTCACTCC TCACGTAATCATTGTGGAAACTGGGGAGGTAAAAATCTCTTGTGTCTTTGATTGCAATGTGTTCAATTCAACAATATATT GAAATGATTGATTGCTTTTGTGACTGTGTTCTTGAAATTACTCTTTGATTGACAATTTGAGAGTGAGGTAAACTTTTGTG GAATGAACCTAACATTTGTCAAATTATGTGGTCAAATGCTAAAATAAAATAAAACAAATAAGAATAATTAAATAGTTGCA AACAGGGGTTGACTCTCTTCACTTGGTACCTCTTCTGCACGTGTCAATTGTGCTCACTTTTGGTTCACCTTCTGCACGTG ACAATTACATGAAAAATCTAGAGTCAATTGTTGGTAGGCCATCTCTAATCCCATTCACAGAAGTGTAGTCCTCCCATTAC AATTATATGGTATCATTTCCCTTTTTCTGTTTCAATAAGGGTATAAAGCCTCAGTTTCAAGTTTTGGACTTTATTAATTG CAGTGTGAGTGCTCTGTAGTTTATGTCTATTGAGTACAGATGGTCCTCAAATTTAGACATGGAACAAGGTTTCAGTTCTT CATGTTAATGTCGTTTATTTTGATGTTCTCTAGCTCAAAAAGTCTGCCTTTCTTCCATGTAGAGTTGCTATCAATTGCTT ATTTAATGCTTTTTTGTGTCTCAATTAATCAATTTGAGAATTTATGAGGTGTGTTCACTTGTCATGATTTATGGTTTAAG TACTGTGTGTTTGAGATGATTAATAGTTGCATGAGAGTTTGGTTCATGGACTATAACGAGGCAGGGAATTGGCTTTCATT GTTTACTTTTTTATGTGGAGCCATTTTGTTATAGGTAGATTGGCAGGGTCGGCATGTAGGTTACTATCGTTGCAAATTCT TCTCACTAGTTTGCTTCTGTTGTCTGTAGGACATCATAGAAAAACTTGTGGCCTTCTCTCAGCAAGGACCTCGGACAGTT TGTATTCTTTCTGCTTCTGGTGCAATCCGCGATGTCATCCTTCGGATTCCACAATCTGCTGCCACTCATACATACGAGGT ACTTATATTCATTGAGAACTCATTCATTATATCAAGAATATTTTACACTATATTGGAATTGATCTGATGATACATGGTTG CTTGACGATCATATTCCTACTAAGTACTGCTTGTCAATGAGAACATGAAACTAAATGCATTAGAATTTTTCATCAAGGAA TAATTTTTTTCCATGTTTTCCACTATAGATACAACTATACTTTGGCAAGTGAAATATTTCACAAATAGTCTATTTAGTAA TGAGAGTACCTTTCTCTTTTGTTTCTTATGATGTTGTAGCAGGAAAAGTGGGTACCATACTCTCTGGGGTGCCATCTGAA AATAGTTCTTACACGTGCTTTATTACTATACTATTGTTGTTATTATTATTTTGCCAACAACTTTGCAAGTAACTTTTTTT TAATGGTGTAGTAAAGATGTTGGAGCATACAGATTCAAGTTGGAAAACGTAACCTTTTAAGTAAATCCACTTTCAGAATT GTTATTGAATGACAATGTGAATTTGCATGCTTGGGTTAATTGCGTAAATTCTTGTACACCATTCTGCTTCAAATGTGTGG ATGAGTAGGTTAAAACCTTAAATTAATGTGAAAATTCTTTGATGGATATTGCTTATTTAGTTGAGTACAATAGTACATTC TAAAATGGTTTCCTCTTTCTTTTTCTTTTATTTTTTTCTTTTCTTTTTAAACGTTATTTGATCTTCAAAAAGTTGTTTAC ATGTTTTGTTTCTATTGTTGTGGATGGAACTGGATCTTATGATGAGTATGTCATAGCCTGATAGGGATACTGCCTACAGC TAATTTGGTCCTGTGTTACAAAGATCATGCAGAGTTGGAGGCACTTATACAAGATTATATTTGTGGCTTATCTTCATTTC CTTCCAATATAATGTTGATCCTACACCTAAAGGACCCCTTTATGCAGTTATGTTTTGGGATGTTAAATATCCAAATAGTT TAGTATCGTAATAGGGTCTAGGAATTTATCATGATTGCTCTGAACTTTTAGTGTTGTATTGACTATGTAGGAGTGTGATG GCTTGGTGACTCAAGTAGTGAAAGCAATTATTGAAATAAACTTTTTACTTTTACTTTTCAATATTTGGTTGTATAGCTGC TCATGTTTTTATTACCTCAATGACCCTTGGGTTGTATTGACTATGAGTACTTAAATATCAATGCCATTAAGCTCAATCCT CTTCATCTTCTGTCATTTTATATTGCAGGGCCCATATGCGATTATATCTTTAACAGGTGCTTTGGAGCCATCTGAAAGCT ATGGTGGGCGTACCAGACCAAGGAATTTGCGTATTTCCATGGCAGGGGCTGATGGACGGGTTTCGGGTGGCGAAGTTGCT GGAACGCTAACTGCAGCTGAACCTGTACAGGTATTGCTCTCAAATAGTGTAAAACTTGATGTCAAGAGTTAACAATTGAC TGGTGATGAAAATTTACCATTTATATTTTCTAAATCACATAGTATATGTAAGTTATTGGATATTATCATTACTATTGGGA GGTGTTTTATGCGTGAAGGATTGACCAAACTTTGATGCTCTATTTTTGTGATTTTTTCTGTTCATTCATAGATCATTGTG GGTAGCTTCATTGTGGATGGGAAAAAATCGAGCTCGAATGTGGTGAGATCTGGACCTTCACCTTCCTCAGCACCAACCTC CCAAATGTTGGCCTTTGGTGCACCAGTAACTCCAACTAGCCCTCCTACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAGG ACAATGATCAAAGTTCTTTCAATCGGGGGCCAGGACTCTACAACAATGCTACTCAGCCTGTTCATAGTATGCAAATGTAC CATCATCCACTATGGGCTGGCCAAACGCATCACTGAAGGTGTGAATTTGGGTACGGATTAACAGTGCAGAATCAGGAGGG TATTTATTTGCTTGATTGTTCGAAGTAGTGGCTAGAGGTCAATTCTATAATGCTAACAAGCATTATTAAGGTCTGACTTT AGATCAGTTTATTTTAAGGTTTAAGTTTATCTCCAACTTTCAGTCGTCTAGGATATTTTTGGCTATAATTAGAATTATAG CATTTCTAGTAATGATAGCCAAGGATATGCTATGCATTATCTGAATTGTGCCATTTTGGAATTTGGTGCCTGCACTTTGG CAGGAACATAGTTAAAACATGATCTTTGCTTTCCTCACATTCATCATGCGTTATTGAGCCTGTTTGTTTCCCCCCATTTT CCTAGTTTTGGTAAAAATGGTTCCGTAAGATTTAAAGGTCTAGATTTTCTGTGTCTTGTGTGGCAAAAAATAGTTATAAA ACCTAAGTTTTG
CDS sequence (LotjaGi4g1v0188300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCCGACCACCGCCACCGCCGCCGAACATGATGACCGCACCAAACTCCTACCCTCCGCCACCACCGACCAACAA TTCCTCCCCCATGATCAGCCCTAATTCCAACATCCTGGCCCCTGCAACCGCCCGATTCCCCTTCGGCTCCCCTTCCCCTG CTCCGCCGCAGGCTCCTCCTCCTCCTCCTCCTCCGTCGGAGACTTTCTCGGCCTCCTTCGAAGGTGCCTCTTCCTCCCCC GCGGGTCTTGCCAAGAAGAAGAGGGGTCGGCCGAGGAAATACTCCCCTGATGGCAACATTGCCCTGGGTCTGGCCCCAAC TCAGGCGGCCCCGGCCCCCTCCGCCGGCGATTCGGGCTCCGCTGATGCTCCGCCGAAGAAACACAGGGGAAGGCCTCCGG GCTCCGGGAAGAAGCAATTGGATGCGCTTGGAGCTGGTGGGCTTGGTTTCACTCCTCACGTAATCATTGTGGAAACTGGG GAGGACATCATAGAAAAACTTGTGGCCTTCTCTCAGCAAGGACCTCGGACAGTTTGTATTCTTTCTGCTTCTGGTGCAAT CCGCGATGTCATCCTTCGGATTCCACAATCTGCTGCCACTCATACATACGAGGGCCCATATGCGATTATATCTTTAACAG GTGCTTTGGAGCCATCTGAAAGCTATGGTGGGCGTACCAGACCAAGGAATTTGCGTATTTCCATGGCAGGGGCTGATGGA CGGGTTTCGGGTGGCGAAGTTGCTGGAACGCTAACTGCAGCTGAACCTGTACAGATCATTGTGGGTAGCTTCATTGTGGA TGGGAAAAAATCGAGCTCGAATGTGGTGAGATCTGGACCTTCACCTTCCTCAGCACCAACCTCCCAAATGTTGGCCTTTG GTGCACCAGTAACTCCAACTAGCCCTCCTACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAGGACAATGATCAAAGTTCT TTCAATCGGGGGCCAGGACTCTACAACAATGCTACTCAGCCTGTTCATAGTATGCAAATGTACCATCATCCACTATGGGC TGGCCAAACGCATCACTGA
Protein sequence (LotjaGi4g1v0188300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSRPPPPPPNMMTAPNSYPPPPPTNNSSPMISPNSNILAPATARFPFGSPSPAPPQAPPPPPPPSETFSASFEGASSSP AGLAKKKRGRPRKYSPDGNIALGLAPTQAAPAPSAGDSGSADAPPKKHRGRPPGSGKKQLDALGAGGLGFTPHVIIVETG EDIIEKLVAFSQQGPRTVCILSASGAIRDVILRIPQSAATHTYEGPYAIISLTGALEPSESYGGRTRPRNLRISMAGADG RVSGGEVAGTLTAAEPVQIIVGSFIVDGKKSSSNVVRSGPSPSSAPTSQMLAFGAPVTPTSPPTSQGPSTESSEDNDQSS FNRGPGLYNNATQPVHSMQMYHHPLWAGQTHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 143 | 143 | - | – | |
| MobiDBLite | 48 | 68 | 21 | - | – | |
| PANTHER | 72 | 344 | 273 | 1.2E-90 | ||
| PANTHER | 72 | 344 | 273 | 1.2E-90 | – | |
| SMART | 85 | 97 | 13 | 0.21 | ||
| SMART | 126 | 138 | 13 | 24.0 | ||
| ProSiteProfiles | 146 | 285 | 140 | 32.091 | ||
| SUPERFAMILY | 150 | 265 | 116 | 8.11E-25 | – | |
| CDD | 151 | 264 | 114 | 2.50722E-27 | ||
| Pfam | 151 | 264 | 114 | 3.5E-23 | ||
| Gene3D | 151 | 272 | 122 | 1.3E-11 | – | |
| MobiDBLite | 270 | 332 | 63 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi4g1v0188300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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