Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0218400 |
| Transcript ID | LotjaGi4g1v0218400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleolar GTP-binding protein 1; TAIR: AT1G50920.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q9C6I8|NOG1_ARATH Nucleolar GTP-binding protein 1; TrEMBL-Plants: tr|A0A0B2R041|A0A0B2R041_GLYSO Nucleolar GTP-binding protein 1; Found in the gene: LotjaGi4g1v0218400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51259478..51261604) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGCAAAGTCAAGTATACCCAGCAAAATTTCCATGATAAGCTCTCGGCTATAATTGACGAGTTCCCTCGACTGGATGA TATTCATCCGTTCTATGGCGACCTCCTCCATGTGCTCTACAATAAAGATCATTACAAGCTAGCACTTGGACAGATCAATA CTGCGAGGAATCTTATTGGGAAAATCGCGAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGATGCAAG ACTCTGAAGGTGGCTGCCCTTGGCCGTATGTGCACTGTCATTAAGAGGATTGGTCCGAGTTTGGCTTACCTGGAACAGAT TAGACAGCACATGGCCAGGCTTCCGTCGATTGATCCGAATACGAGGACTGTCTTGATTTGTGGATACCCCAATGTCGGCA AGAGCTCGTTTATTAATAAAATTACTAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACAAAGTCTCTTTTCGTT GGCCATACGGACTATAAGTACCTAAGGTACCAAGTCATTGACACACCGGGGATTTTGGACAGGCCTTTCGAAGATCGCAA CATTATTGAGATGACCAGTATCACTGCTCTAGCGCATTTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGGTCTT GCGGTTACAGTATTGCGCAGCAAGCAGCCCTATTTCACAGCATTAAGTCGTTGTTTTTGAACAAGCCATTAATTGTAGTT TGCAACAAGACTGACTTGCAACCACTAGAGGGGATATCTGAGGAAGACAGGAAGTTGGTCATGGAGATGAAAGCTGAAGC CTTGAAGACTATAGTTGGCCAAGGAGATGAGCCTACAGACAGTGACAGTGTGCTGTTGACCATGAGCACTTTGACAGAAG AAGGGGTAACTGCAGTGAAGAATGCAGCATGTGAGAGATTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAA ATTAACGATTGCTTGAATAGGTTTCATGTTGCAATTCCAAAGCCACGTGACCAGAAAGAAAGACCACCATGTATTCCTCC AGCAGTTTTAGAAGCTAAAGCTAAACAAACAGCTGAGGAGGAGAAGAGAAAAACTGAAAAGGACTTGGAGGATGAAAATG GTGGGGCTGGTGTATACTCAATGAACTTGAGAAAGCATTATATTTTGGCCAGTGATGAATGGAAAGAAGATATTCTGCCA GAAATTTTGGATGGACACAACGTGTATGATTTCATTGATGCTGATATTCTACAGAGGCTTGAAGAGCTGGAAAGAGAAGA GGGTCTAAGACAGGCAGAAATTGAAGATGATGATTTTGAGATGGATGGTACTGAATTGGCGCCAGAACAGCAAGCAACTT TAGCTGCGATCAGGAAAAGGAAAAGCTTGCTCATCCAACGGCATAGGATGAAAAAGAGCACTGCTGAGAGCCGGCCAACA GTTCCAAGGAAATTTGACAAGGACAAGCAATATACCTCAGAAAGAATGGGAAGGCAGCTGTCATCTGTGGGGCTTGATGC CACTTTGGCAATCAAGAGAATGCGTAGCAGATCTGTCTCTAGGAGAGGTCGGAAAAGGGAAAGGTCACCTGAAACAAGAA GTGCTGATGGTGGAGATGGTATGGACATTGATGGCGATACCGCTAGCAAGAAACAGCGTCTAAGTAGATCACGGTCCAGG TCAGTGTCACGCGCACCCAATGAAGTTGTGCCTGGAGAAGGCTTCAGAGATTCTGCTCAAAAGGGCAAGGCAATTAAACT TGCAAAGAAGTCTGTCAAGAAGAGAAACAAGGAAGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCA AGCACTTGTTTTCTGGGAAGCGGTCCAGTGGGAAAACTGATAGACGTTAAAACAGGTAATGTTCATTGACTCAATTATCA TGTACAACTAGGCACACATCAAGAATTTCATTTTGCTGCTCGTGTAGTAGTTTGATGTTGATTTTTCACAGATAAACTCA TTCGCCATTGATTTTCCTGGCCAATGATTTAGATTTACCTAATTATATACATGTTACTTTTTAACTTAGATGGTATTCAG CAATCACCACACTTATGTCAGAAAAAATATTTCTTTTCTCTGCAGGG
CDS sequence (LotjaGi4g1v0218400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCAAAGTCAAGTATACCCAGCAAAATTTCCATGATAAGCTCTCGGCTATAATTGACGAGTTCCCTCGACTGGATGA TATTCATCCGTTCTATGGCGACCTCCTCCATGTGCTCTACAATAAAGATCATTACAAGCTAGCACTTGGACAGATCAATA CTGCGAGGAATCTTATTGGGAAAATCGCGAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGATGCAAG ACTCTGAAGGTGGCTGCCCTTGGCCGTATGTGCACTGTCATTAAGAGGATTGGTCCGAGTTTGGCTTACCTGGAACAGAT TAGACAGCACATGGCCAGGCTTCCGTCGATTGATCCGAATACGAGGACTGTCTTGATTTGTGGATACCCCAATGTCGGCA AGAGCTCGTTTATTAATAAAATTACTAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACAAAGTCTCTTTTCGTT GGCCATACGGACTATAAGTACCTAAGGTACCAAGTCATTGACACACCGGGGATTTTGGACAGGCCTTTCGAAGATCGCAA CATTATTGAGATGACCAGTATCACTGCTCTAGCGCATTTGAGAGCTGCAATATTGTTTTTCTTGGACATCTCTGGGTCTT GCGGTTACAGTATTGCGCAGCAAGCAGCCCTATTTCACAGCATTAAGTCGTTGTTTTTGAACAAGCCATTAATTGTAGTT TGCAACAAGACTGACTTGCAACCACTAGAGGGGATATCTGAGGAAGACAGGAAGTTGGTCATGGAGATGAAAGCTGAAGC CTTGAAGACTATAGTTGGCCAAGGAGATGAGCCTACAGACAGTGACAGTGTGCTGTTGACCATGAGCACTTTGACAGAAG AAGGGGTAACTGCAGTGAAGAATGCAGCATGTGAGAGATTATTGAATCAGAGGGTGGAGATAAAGATGAAGTCAAAGAAA ATTAACGATTGCTTGAATAGGTTTCATGTTGCAATTCCAAAGCCACGTGACCAGAAAGAAAGACCACCATGTATTCCTCC AGCAGTTTTAGAAGCTAAAGCTAAACAAACAGCTGAGGAGGAGAAGAGAAAAACTGAAAAGGACTTGGAGGATGAAAATG GTGGGGCTGGTGTATACTCAATGAACTTGAGAAAGCATTATATTTTGGCCAGTGATGAATGGAAAGAAGATATTCTGCCA GAAATTTTGGATGGACACAACGTGTATGATTTCATTGATGCTGATATTCTACAGAGGCTTGAAGAGCTGGAAAGAGAAGA GGGTCTAAGACAGGCAGAAATTGAAGATGATGATTTTGAGATGGATGGTACTGAATTGGCGCCAGAACAGCAAGCAACTT TAGCTGCGATCAGGAAAAGGAAAAGCTTGCTCATCCAACGGCATAGGATGAAAAAGAGCACTGCTGAGAGCCGGCCAACA GTTCCAAGGAAATTTGACAAGGACAAGCAATATACCTCAGAAAGAATGGGAAGGCAGCTGTCATCTGTGGGGCTTGATGC CACTTTGGCAATCAAGAGAATGCGTAGCAGATCTGTCTCTAGGAGAGGTCGGAAAAGGGAAAGGTCACCTGAAACAAGAA GTGCTGATGGTGGAGATGGTATGGACATTGATGGCGATACCGCTAGCAAGAAACAGCGTCTAAGTAGATCACGGTCCAGG TCAGTGTCACGCGCACCCAATGAAGTTGTGCCTGGAGAAGGCTTCAGAGATTCTGCTCAAAAGGGCAAGGCAATTAAACT TGCAAAGAAGTCTGTCAAGAAGAGAAACAAGGAAGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCA AGCACTTGTTTTCTGGGAAGCGGTCCAGTGGGAAAACTGATAGACGTTAA
Protein sequence (LotjaGi4g1v0218400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKVKYTQQNFHDKLSAIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCK TLKVAALGRMCTVIKRIGPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFV GHTDYKYLRYQVIDTPGILDRPFEDRNIIEMTSITALAHLRAAILFFLDISGSCGYSIAQQAALFHSIKSLFLNKPLIVV CNKTDLQPLEGISEEDRKLVMEMKAEALKTIVGQGDEPTDSDSVLLTMSTLTEEGVTAVKNAACERLLNQRVEIKMKSKK INDCLNRFHVAIPKPRDQKERPPCIPPAVLEAKAKQTAEEEKRKTEKDLEDENGGAGVYSMNLRKHYILASDEWKEDILP EILDGHNVYDFIDADILQRLEELEREEGLRQAEIEDDDFEMDGTELAPEQQATLAAIRKRKSLLIQRHRMKKSTAESRPT VPRKFDKDKQYTSERMGRQLSSVGLDATLAIKRMRSRSVSRRGRKRERSPETRSADGGDGMDIDGDTASKKQRLSRSRSR SVSRAPNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRVIPNLKPKHLFSGKRSSGKTDRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 118 | 118 | 2.7E-41 | ||
| PANTHER | 1 | 629 | 629 | 9.1E-295 | ||
| PIRSF | 1 | 629 | 629 | 2.2E-241 | ||
| Gene3D | 1 | 114 | 114 | 1.1E-45 | – | |
| PANTHER | 1 | 629 | 629 | 9.1E-295 | – | |
| SUPERFAMILY | 2 | 301 | 300 | 2.41E-38 | ||
| Gene3D | 115 | 326 | 212 | 1.4E-57 | – | |
| ProSiteProfiles | 122 | 308 | 187 | 38.932 | ||
| CDD | 122 | 308 | 187 | 2.77203E-97 | – | |
| PRINTS | 124 | 144 | 21 | 7.1E-8 | ||
| PRINTS | 145 | 163 | 19 | 7.1E-8 | ||
| PRINTS | 172 | 187 | 16 | 7.1E-8 | ||
| Pfam | 189 | 245 | 57 | 8.9E-25 | ||
| Coils | 355 | 375 | 21 | - | – | |
| Pfam | 363 | 416 | 54 | 3.4E-27 | ||
| MobiDBLite | 467 | 499 | 33 | - | – | |
| MobiDBLite | 469 | 494 | 26 | - | – | |
| MobiDBLite | 514 | 629 | 116 | - | – | |
| MobiDBLite | 524 | 553 | 30 | - | – | |
| Coils | 627 | 629 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
Expression pattern of LotjaGi4g1v0218400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…