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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0232200 |
| Transcript ID | LotjaGi4g1v0232200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U3 small nucleolar ribonucleoprotein protein MPP10; TAIR: AT5G66540.1 U3 small nucleolar ribonucleoprotein; Swiss-Prot: sp|O00566|MPP10_HUMAN U3 small nucleolar ribonucleoprotein protein MPP10; TrEMBL-Plants: tr|M1BJB9|M1BJB9_SOLTU U3 small nucleolar ribonucleoprotein protein MPP10; Found in the gene: LotjaGi4g1v0232200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54348961..54353177) extracted from Lotus japonicus Gifu genome v1.2.
GCACAGTTTAGGCTTAGTCCATAGCAAACTCTGAATCCCTGTCTTAAAACCCTAAACCCACTCATCGCTGAAGGTGAAGG AACAGACAGAGAGAAACAAAACACCCAGTCATGGCGAACGAAAACGACGCCGGCGGCGAAGCCCTACGGCGCGTGACTGC GACGGAACCACCAACATGGCTGGCACCGAACCCATCGCTATCTGAAACCGCTCGTACTGCATCGCAGTACCTGTTCTCCA CCCTCAGACCGTTCACCCCGAAATCGCCATTGGACCAACTCCTTGTTGATGGCTTCGACGTAGAGCAGATATGGCAGCAA ATCGACCTTCAATCACAGCCTCTTTTGTCCACCCTCCGTCGCCGAGTGAACCATCTGGCCCAAAACCCTGAAGAGATTTC GCAGCTGATGGTCCCTTCGGGTGCTGGGAACGAGGTGGAGACAGAGGGGCGAGAAGAGTGGGGCGAAGAAATTGACGGTT TGGATGAGGAATTGGATGATGCTGATGATGATGATGATGATGAAGAGATGGTAGAGATGGAGGAGGGAGAAGATGAGGAA GAAGAAGAAGAAGAAGAAGAAGATGATGAGGAGGAGGAGGAGGAGGAGGAAGATGATGAAGAGATGGAGGATGAAGACGA GGAGGGAGGAGGGAGCGAAGAGGAGGACGGTGAAGGTGGTGGCATTGAGGATGAATTCTTGAAAATAGGTGAATTGAACA AGTACTTGCAGAAGGAGGAAGAGAATTTCGAGAACGGAGATGAAGACAGGAAAGGTGAGGATGAAGATGAAGATGAAGAT GAAGATGATGATGAAGATGATGATGATGAGGTGAGAGTGCTCTTTGCTTAGCTTGGTTTCATATTCATTCTGTCTGCAAA ATTCATATTGATAAGGCTCAGTGCTTGTTAAGCTGTTATTTGGTTCATTTGGTTATATTTCACTTATTGATTAAATGGCT TCTGATGGCTCTCATTGTGTTTATCTAGTATGGTGGTTTTGGAATGGATGATGAAGATGGAGAAGCAGTGGGCATGAAAA AAGCAAAAAAAGCAAAAGATCCAATGTATTTTTCCTTGCATACTTGTATTTGCACAAGTTTTTTTTTTCTATTTCTCTAA GCTTTACAGTATTTATTTTACTATTATTTCATTATTTATTATGTGGGTTGTGTGTGTGGTGTATTTGCTTTGATGTTCTT CTGGTAAATGCTGACACCATATATATCTTATGCAATTGGCTCGGTGCCGCTGCTTAATGATATAGCTCCTTGAAGTTTCA TACTAATTTAGAATTTTTCATTATATCTGGATGCTGGATTCAATTGTTTTTGTTTGTATGTTGCTTTAAGGTATGAAGAC TTTTTTGGAGGTAAAAAGGACGCACAGGTATCTCTCTTTCTAAATGTACACACATAACAGTGTAGGGGTTTATTACTAAA ACCAAACTTTCAAACTCTTAATTATTTTTTTCTTGTGTATGTAGAAGAAAAGACCTTCTACCCATGAAAAGGAACTGGAA AAAATTCAATCAAAGATAGAGCAGATGGAGCAAGCTAACATAGAGCCAAAAACTTGGACTATGCACGGCGAGGTAATAGA ATGGTCCTTTATTCTTTTTACCTCACTTATATCTGGGTTGCATTCTATCCCTTTTTGCTTATCTGTTATTAGATTATTGA TTGTTGGTTTTATAATAGGTAACTGCTGCAAAGAGACCCAAGAATAGTGCATTGGAAGTTGATCTTGACTTTGAGCACAA TGTGAGACCTGCTCCCGTAATCACTGAGGAGGTGACAGCTTCAATTGAGGATATGATCAAGAAAAGGATTCTTGAGGTAA ATTAATATGCTGAACTGACACAGTTTGGACTCTGCTACAATGCAGTGTTACAAATGTATTACTAATGAAAAGTCCCTGAA TCCCAACTGTGCAAGGCACGAGAACTACATCACTGGATTTTTTAGAGAACCAACTCTCTCCCCAGAGTTTCCAATATTAC AATTTTCAAATGAGTCCGCTTTCCACTTTCTCTTTGCCTTAACAATCTCTATTAACCACAGCTGTCACTTGATTCATGCC CTTATTCCTATCATTTATCATATTTACCCACGGGTGGAAGCTGTGTATGGATGATATTAATCTAATACTTTTGGTGTGCT AACTGATTGTTGAGTTTCTACCAGGCAATGCATGACACTCAAACACATACACAAATACATGCACACTATATGTTGTTTCT GATTTACATCTGTGTTTTTTTAGGGACATTTTAACGATGTTGAAAGGGCTTCTAAACTGCCATCTAAAGCGCCCCGGGAA TTGAAGGAGTTGGTAAGCCTTGTTTAACTGAAATAAATAGATTTTCAGGTTCAACTTCTTCTCTAGCTATATTTGTATGT AACTAACTTGTACAACTCATTGCTGTGATTATAGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAACTTTATGAGGTCT GTATTTCTTGACTATATGTGTTGTGACATTGGAAACCCTATTCAACTTTCAGCTTCTTTCTTCTTCTTTGCTAATTCTCA AGGCGTTGTCATACATTTTCTCCTTATGATATGGCTCATGAATCATGATTTTTCATTTGTTGACAGCAAGAATATGTTCA GAAGAAAGACCCCAGTTCGGCACCATTGTCATTCAAAGATGAACTAAAGAATGAGGTACAAGTCTTTATTGCTTGGACTT TGTCTCTACTTCTAATAATATTTAGTCTCTCTCATTTCCACACAGCACCTTTTAGATATCTCATGATGTACTGAATCTTG TGCCTTTACTTGTGATCAGGCAGACATGCTGTTTAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTG CTCCAAAACCTGTATGGCATCTCCATTCCCATTATCTCTTGATAGACAATATATATGACTCTTCAAATTTTCTGTTTTCT TATTTACCTTGAACTGAACTGGGCAGGTTATCGAGGATATGTCTTTTCAAGCTAACGTGCCTGCTCTGGCAATGGAAGAA GTAAAGAGCTACTATCTTCTCAAAATTTTGTTTCTATTTCTTCCAGTTATTGGTAACTTACAATTTATTATACCTTCCTT GGGTAGATTGCTCCTGTGGCTGTTTCAGATGCTGCTTTTCTGGCTCCTGAAGAGGTCTTTGATGGTAAGGGTGATGTTAA GGAAGAAGGCGAGCTGACAAAGGAAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAAATTTAAAGGTATGATCTTTT ATGCAACAAAAATATCTGCCTAGTGACTGTCCCATGACGATATACACATTATGGCGTTTAATACTTCTATGCTTGTATTT ATGTGAAGCTCCTCACCATATTGATATTCATATGCTTTTCATTATTTATTAACAAACTTCTATGATTACAGCTGAGGCAG TAAAAAGGCCAGCAAAGAAGGTGCCAGAGGGCCCATCTCCTATCCAAGTAAATGGTAATTTCTTTTTTATAAATCTGTAA TTTTATATCAGAATTGTTGCATTGACCTCTCTTCTTTTTTGGATTGTGCAGTAAAAGTTAATTTCACTGAACAAAATAAA CTACAGTTACTGCATACTATAGAATGAGTCTGTCAGATGTAGTAGTGTAGTCTAAAGAATTTTTCCAAAGCATAACATGG TAGCTTCTCACGTTGAACTTCCCTGGATCTTTGCAGGCTAAGAACAATTTCATAGGATTATTTACAGAAGCTGCACAACT AGCAACATTAAGTTCATTGGGACCCGTGGCAAAAATAAGCAAAATAGAAAAGGAGGAGGATTTTTGGAGTCAGCCATCAT AAATGAGTGATGCTATTGGTACATGCAGCAGTGGCTGATGAGAATAACTTGAATGCTCCTATAGAATTGCTTATTCTCAT TGCTCTTTAAATTCTAAGTTACCATCAAAATATTGATACCAAATTCGCAGTTTAGTTGCTTATTTTTTGGCACTCATTAT ATGAAGTTTATAGCAGCAGGGGTATCTGTTCTTTGCAAATTTTGTATTTTATTTTACTCACAGGTGATACGTTTGTATTG GTCGATACTTTCATAAATTTAATTTAATTGGTAGATATTAATTATGATTTGTAATTATTATTGATTATGGTTTGATTTTA TTTTTTCCAAAAAAAATAGTTGTTAATATCGAACTTAGAATATAAGGAAGTGAGCAG
CDS sequence (LotjaGi4g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACGAAAACGACGCCGGCGGCGAAGCCCTACGGCGCGTGACTGCGACGGAACCACCAACATGGCTGGCACCGAA CCCATCGCTATCTGAAACCGCTCGTACTGCATCGCAGTACCTGTTCTCCACCCTCAGACCGTTCACCCCGAAATCGCCAT TGGACCAACTCCTTGTTGATGGCTTCGACGTAGAGCAGATATGGCAGCAAATCGACCTTCAATCACAGCCTCTTTTGTCC ACCCTCCGTCGCCGAGTGAACCATCTGGCCCAAAACCCTGAAGAGATTTCGCAGCTGATGGTCCCTTCGGGTGCTGGGAA CGAGGTGGAGACAGAGGGGCGAGAAGAGTGGGGCGAAGAAATTGACGGTTTGGATGAGGAATTGGATGATGCTGATGATG ATGATGATGATGAAGAGATGGTAGAGATGGAGGAGGGAGAAGATGAGGAAGAAGAAGAAGAAGAAGAAGAAGATGATGAG GAGGAGGAGGAGGAGGAGGAAGATGATGAAGAGATGGAGGATGAAGACGAGGAGGGAGGAGGGAGCGAAGAGGAGGACGG TGAAGGTGGTGGCATTGAGGATGAATTCTTGAAAATAGGTGAATTGAACAAGTACTTGCAGAAGGAGGAAGAGAATTTCG AGAACGGAGATGAAGACAGGAAAGGTGAGGATGAAGATGAAGATGAAGATGAAGATGATGATGAAGATGATGATGATGAG TATGGTGGTTTTGGAATGGATGATGAAGATGGAGAAGCAGTGGGCATGAAAAAAGCAAAAAAAGCAAAAGATCCAATGTA TGAAGACTTTTTTGGAGGTAAAAAGGACGCACAGAAGAAAAGACCTTCTACCCATGAAAAGGAACTGGAAAAAATTCAAT CAAAGATAGAGCAGATGGAGCAAGCTAACATAGAGCCAAAAACTTGGACTATGCACGGCGAGGTAACTGCTGCAAAGAGA CCCAAGAATAGTGCATTGGAAGTTGATCTTGACTTTGAGCACAATGTGAGACCTGCTCCCGTAATCACTGAGGAGGTGAC AGCTTCAATTGAGGATATGATCAAGAAAAGGATTCTTGAGGGACATTTTAACGATGTTGAAAGGGCTTCTAAACTGCCAT CTAAAGCGCCCCGGGAATTGAAGGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAACTTTATGAGCAAGAATAT GTTCAGAAGAAAGACCCCAGTTCGGCACCATTGTCATTCAAAGATGAACTAAAGAATGAGGCAGACATGCTGTTTAAGAG ACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTGCTCCAAAACCTGTTATCGAGGATATGTCTTTTCAAGCTA ACGTGCCTGCTCTGGCAATGGAAGAAATTGCTCCTGTGGCTGTTTCAGATGCTGCTTTTCTGGCTCCTGAAGAGGTCTTT GATGGTAAGGGTGATGTTAAGGAAGAAGGCGAGCTGACAAAGGAAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAA ATTTAAAGCTGAGGCAGTAAAAAGGCCAGCAAAGAAGGTGCCAGAGGGCCCATCTCCTATCCAAGTAAATGGCTAA
Protein sequence (LotjaGi4g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANENDAGGEALRRVTATEPPTWLAPNPSLSETARTASQYLFSTLRPFTPKSPLDQLLVDGFDVEQIWQQIDLQSQPLLS TLRRRVNHLAQNPEEISQLMVPSGAGNEVETEGREEWGEEIDGLDEELDDADDDDDDEEMVEMEEGEDEEEEEEEEEDDE EEEEEEEDDEEMEDEDEEGGGSEEEDGEGGGIEDEFLKIGELNKYLQKEEENFENGDEDRKGEDEDEDEDEDDDEDDDDE YGGFGMDDEDGEAVGMKKAKKAKDPMYEDFFGGKKDAQKKRPSTHEKELEKIQSKIEQMEQANIEPKTWTMHGEVTAAKR PKNSALEVDLDFEHNVRPAPVITEEVTASIEDMIKKRILEGHFNDVERASKLPSKAPRELKELDDNKSKQGLAELYEQEY VQKKDPSSAPLSFKDELKNEADMLFKRLCLKLDALSHFNFAPKPVIEDMSFQANVPALAMEEIAPVAVSDAAFLAPEEVF DGKGDVKEEGELTKEERKRRRANKKRKFKAEAVKRPAKKVPEGPSPIQVNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 279 | 277 | 5.2E-171 | ||
| PIRSF | 23 | 282 | 260 | 5.5E-24 | ||
| Pfam | 49 | 279 | 231 | 1.9E-24 | ||
| MobiDBLite | 99 | 291 | 193 | - | – | |
| MobiDBLite | 113 | 191 | 79 | - | – | |
| Coils | 114 | 134 | 21 | - | – | |
| Coils | 140 | 178 | 39 | - | – | |
| MobiDBLite | 192 | 215 | 24 | - | – | |
| MobiDBLite | 216 | 247 | 32 | - | – | |
| PIRSF | 246 | 523 | 278 | 5.8E-95 | ||
| MobiDBLite | 250 | 291 | 42 | - | – | |
| Pfam | 275 | 517 | 243 | 5.1E-85 | ||
| PANTHER | 275 | 519 | 245 | 5.2E-171 | ||
| Coils | 285 | 305 | 21 | - | – | |
| MobiDBLite | 484 | 498 | 15 | - | – | |
| MobiDBLite | 484 | 531 | 48 | - | – | |
| MobiDBLite | 499 | 513 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Small nucleolar ribonucleoprotein complex | A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Cellular component | Mpp10 complex | A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p. |
Expression pattern of LotjaGi4g1v0232200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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