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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0244100 |
| Transcript ID | LotjaGi4g1v0244100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G40010.1 AAA-ATPase 1; Swiss-Prot: sp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial; TrEMBL-Plants: tr|A0A072UQF5|A0A072UQF5_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi4g1v0244100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59566416..59568783) extracted from Lotus japonicus Gifu genome v1.2.
CCATGGTTGATGGATGCACAGAGCTCAGAAAACACAACTTTCAAATCTCACGTCCCTAAGAATTGAACGCTGCATTACTA CAATAGAACACAATCAAAATTTTAGCTGGTATATGAGTCTTTATTGTTGAACCGACTCATTTTAAGTACCGCACCTTAGT CTAGCTTAAGATACCACATCAAATAAACTTTTTGATGCATCCATTCATTAAACTTAAACACACACATAATATAGGTGTGA GCTTTCTACTTTTTTCCTCTTTCTCATTTCCACCACCCAAAGCAAACAACACACTTACACACGCACACACAGAGTTTCAT TTTCTTCAACCTCAAGAGAAGCCAAGAACTCACACACAGTCACACACACAAACACAACACAATGATGCCCATGAAGATGA CAGAGATGTGGACAACAATGGGCTCAACCTTAGCCAGCTTCATGTTCCTCTTCGCCGTCATCCGCCAGTACTGTCCCTAC GAGGTTCGCCGCTTCTTCGAGAAGCACACTCACACTCTCACCACCTACTTCTACCCTTACATCCGCATCTCTTTCCATGA ATTCTCCGGCGACCGCCTCAAGCGCAGCGACGCCTACGCCGCCGTAGAAGCCTACCTCAGCGCCAACACTTCAAAGAGCG CAAAGAGGCTCAAAGCAGAGATGGGAAAAGACGCCTGCAAGTTGATTCTCACCATGGATGAACATGAGAGAGTCACTGAT GAGTTCAAAGGTGTGAAAGTTTGGTGGGTTTGTAGCAAAATCATGTCCCCATCAAGGTCCATGACGATTTACCAAGAACA AGAGAAGAGGTTCTACAAGTTAACTTTCCACAAGAAATATAGAGACACTGTTACTGGTTCTTATTTGGAGCATGTGATGA GGGAAGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTATACAAATAGCCCTGGTTACAAATGGCCGAGTTAC AAGCAAACAATGTGGAGTCACATTGTTTTTGAGCACCCTGCAACTTTTGAAACAATGGCTATGGAGCCAGAGAAGAAGAA GGAGATCATTGAGGATTTGGTCACATTTAGTAAGAGTAAGGATTTTTATGCTAGGATTGGGAAGGCATGGAAAAGGGGTT ATTTGCTTTTTGGTCCTCCTGGTACTGGGAAATCTACAATGATTGCTGCCATGGCTAACTTGTTGGGGTATGATGTGTAT GACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGCTGAGGAAGCTTTTGATTGAGACAACTTGTAAGTCTATAATTGT TATTGAGGACATTGATTGCTCTCTTGATCTCACAGGGCAGAGGAAGAAGAATGGGGAGAAATTTACAGAGGATGTTGAGA GTGATAAACTGAACCATGATGTTGTGAGGAAAGAGGCTAATAAAGAAGAAGGAAGCTGTGGTAGCAAGGTCACACTTTCT GGGCTGTTGAATTTCATAGATGGGATTTGGTCTGCTTGTGGAGGAGAGAGGTTGATTGTGTTCACAACAAACTATGTGGA GAAGCTTGATCCTGCACTCATCAGAAGGGGGAGAATGGATAAGCATATTGAGCTTTCTTACTGCACTTTTGAAGGGTTTA AAGTTCTTGCCAATAATTACTTGAAGCTTGAGAATCATGCATTGTTTGACACAATCAAGAGGCTAATTGGGGAGATTGAG ATCACACCAGCTGATGTTGCTGAGAATCTCATGCCAAAGTCTGCACTGGATGATGCTGATAAGTGTCTTTCAAACCTGAT TGAAGCACTTGAGGAAGCAAAAGCTAATGCAAAAGCAGAGGAGGTGCTAAGACAGAGTAGTTCTATTAAAGAAGAAGGTG AGGAATTGGGACACTTTGGTCACATTAAGGAAAATGGCAACATTGGAGATGACAAAGAAATTGATCAAGCAAAGGACAAG AGCATGAGGTGGAACATTTGTGCTAATGTTGTGTAGAAGAAATTGTGGCATGAGGGTAGAATGTGAGGCACATTTCTCAT CATAGTACTTGCATCTATCTTTATGTTACATGAGAAGGGGGGGGGGGGGAAAGAGGGATTGAGGGTTTTGTTAAGATTAT AATTTTATTAGCATCTAAAGTCTTTGGTATGCTACTGAATCCTTCTGCTTTTGGGATTAATTTTGAACTTCCATAAGAGG GAATAAAATTTAATGTTAATGAGATTATAGGACCCTCCTTAATTTTGTTACCCCAAAGCAACTTGCTGTTGAACATGTTA ATGTTACTTATGCAGTAAATAGAAACAAAAAATTTACAGTCACTCCTGATCTTATAGACTGGAGTGTTGTATGTTTGAAG ACACAATTTATTTTCATATGTTGTTTAGCTGAAGAATGTGCTTCAAAT
CDS sequence (LotjaGi4g1v0244100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCCATGAAGATGACAGAGATGTGGACAACAATGGGCTCAACCTTAGCCAGCTTCATGTTCCTCTTCGCCGTCAT CCGCCAGTACTGTCCCTACGAGGTTCGCCGCTTCTTCGAGAAGCACACTCACACTCTCACCACCTACTTCTACCCTTACA TCCGCATCTCTTTCCATGAATTCTCCGGCGACCGCCTCAAGCGCAGCGACGCCTACGCCGCCGTAGAAGCCTACCTCAGC GCCAACACTTCAAAGAGCGCAAAGAGGCTCAAAGCAGAGATGGGAAAAGACGCCTGCAAGTTGATTCTCACCATGGATGA ACATGAGAGAGTCACTGATGAGTTCAAAGGTGTGAAAGTTTGGTGGGTTTGTAGCAAAATCATGTCCCCATCAAGGTCCA TGACGATTTACCAAGAACAAGAGAAGAGGTTCTACAAGTTAACTTTCCACAAGAAATATAGAGACACTGTTACTGGTTCT TATTTGGAGCATGTGATGAGGGAAGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTATACAAATAGCCCTGG TTACAAATGGCCGAGTTACAAGCAAACAATGTGGAGTCACATTGTTTTTGAGCACCCTGCAACTTTTGAAACAATGGCTA TGGAGCCAGAGAAGAAGAAGGAGATCATTGAGGATTTGGTCACATTTAGTAAGAGTAAGGATTTTTATGCTAGGATTGGG AAGGCATGGAAAAGGGGTTATTTGCTTTTTGGTCCTCCTGGTACTGGGAAATCTACAATGATTGCTGCCATGGCTAACTT GTTGGGGTATGATGTGTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGCTGAGGAAGCTTTTGATTGAGACAA CTTGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTCACAGGGCAGAGGAAGAAGAATGGGGAGAAA TTTACAGAGGATGTTGAGAGTGATAAACTGAACCATGATGTTGTGAGGAAAGAGGCTAATAAAGAAGAAGGAAGCTGTGG TAGCAAGGTCACACTTTCTGGGCTGTTGAATTTCATAGATGGGATTTGGTCTGCTTGTGGAGGAGAGAGGTTGATTGTGT TCACAACAAACTATGTGGAGAAGCTTGATCCTGCACTCATCAGAAGGGGGAGAATGGATAAGCATATTGAGCTTTCTTAC TGCACTTTTGAAGGGTTTAAAGTTCTTGCCAATAATTACTTGAAGCTTGAGAATCATGCATTGTTTGACACAATCAAGAG GCTAATTGGGGAGATTGAGATCACACCAGCTGATGTTGCTGAGAATCTCATGCCAAAGTCTGCACTGGATGATGCTGATA AGTGTCTTTCAAACCTGATTGAAGCACTTGAGGAAGCAAAAGCTAATGCAAAAGCAGAGGAGGTGCTAAGACAGAGTAGT TCTATTAAAGAAGAAGGTGAGGAATTGGGACACTTTGGTCACATTAAGGAAAATGGCAACATTGGAGATGACAAAGAAAT TGATCAAGCAAAGGACAAGAGCATGAGGTGGAACATTTGTGCTAATGTTGTGTAG
Protein sequence (LotjaGi4g1v0244100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPMKMTEMWTTMGSTLASFMFLFAVIRQYCPYEVRRFFEKHTHTLTTYFYPYIRISFHEFSGDRLKRSDAYAAVEAYLS ANTSKSAKRLKAEMGKDACKLILTMDEHERVTDEFKGVKVWWVCSKIMSPSRSMTIYQEQEKRFYKLTFHKKYRDTVTGS YLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIEDLVTFSKSKDFYARIG KAWKRGYLLFGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTCKSIIVIEDIDCSLDLTGQRKKNGEK FTEDVESDKLNHDVVRKEANKEEGSCGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSY CTFEGFKVLANNYLKLENHALFDTIKRLIGEIEITPADVAENLMPKSALDDADKCLSNLIEALEEAKANAKAEEVLRQSS SIKEEGEELGHFGHIKENGNIGDDKEIDQAKDKSMRWNICANVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 6 | 480 | 475 | 2.7E-219 | – | |
| PANTHER | 6 | 480 | 475 | 2.7E-219 | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 524 | 496 | - | – | |
| Pfam | 32 | 124 | 93 | 4.8E-22 | ||
| SUPERFAMILY | 104 | 463 | 360 | 1.51E-52 | ||
| Gene3D | 199 | 400 | 202 | 3.6E-42 | – | |
| SMART | 243 | 402 | 160 | 1.4E-8 | ||
| CDD | 244 | 400 | 157 | 1.04651E-7 | – | |
| Pfam | 248 | 399 | 152 | 2.3E-13 | ||
| ProSitePatterns | 370 | 389 | 20 | - | ||
| Coils | 449 | 476 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0244100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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