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LotjaGi4g1v0266100.1

Overview

Field Value
Gene ID LotjaGi4g1v0266100
Transcript ID LotjaGi4g1v0266100.1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:63112748..63114740) extracted from Lotus japonicus Gifu genome v1.2.

GATTTAGATATCAAACAAATTAAATTTTATGATATAGTCTAGATATAAATTGCAATGGAAAGTGTTGAAGAAGGGGTAGA TATGTAATTTAAGATAAGGTAGAAGAAGGGTTGAAGGGTTTGGGAATTGAGAGAGAGGATTAAGATCGTGATAACATCGT CATCCTCGTTCGTTCGACACTGCAATTGTTGTTATCTCTGTCTGCAACGAGGTTGTTTTTTGGCGGGAAAAAGATGTCGG GAAAGGGAGCGAAGGGGTTGATAACCTCCGCCAACAACAAGGACAAGGACAAGGACAAGAAGAAACCCACTTCTCGTTCT TCCCGTGCCGGTCTTCAGGTCAGATCTCTGTCACACATTCTGTAATTGTAATCAGTCCCTTCGTTTTCTCTCACTGCTTA ATTTAACGTTGTTTACTGTGATTGTTATTCAGTGTGATTGTGTTTTCTTATTCCTCACACTGCATTCTAGGTTCTGATTT GCGTTTTCAACTTTTGTTTAGTGAAACCCAGAAATTAAAATCAAAAGTTTGTATCTGATTGTACACCTAATGATCTATAG ATGAATCAAGCTAACTAACCTTTCTAATTCTATGTGTAAATTATAAAAGAAATAATTGTAGCAATTTTTACTATCCTCAT TATGTACCCAGTTCTGTTACCATTTGTCAATTTGAACTAATGGCTTATTGATGTTCAGTTTGTACACTGGATTACCTTAT TGGGCAGATTGCACATGGAGTATTGTTTATTTATGTGCTTTTAGAATTTTACCTTTCTTGTTATATAGTATGGACTGTCT GCTGTTTGGATACCGCCTTATTGGAGCTTATGTACTGGAAAAGGCACTAAATAAACTCTAATAAGTGCGCTTTGGTTTGT ATCCAAACGGGTTAATATATTTAAGAGATATGTAATGATGGTTCAACAAAACAAGTTATGAAAGATTATGGAAGTTTGTT GGAATTTCACAATCTGAGTAGGTTTTCATGTTTTCCTAATGTGTTTTGTTGATGGTGATAAGCACATCAATAGAATTGGG CAGGCGAATTCTTTGAATACTGCATTAACTATTTGATACCTCAGGCAACTGACGTTTGTGTGAAATTTGCAGTTTCCGGT TGGAAGGATCCACCGGCTTTTGAAGTCAAGAACCACGGCTCATGGTAGAGTGGGAGCCACGGCTGCTGTCTACTCTGCTG CTATCTTGGAGTATCTGACTGCTGAAGTATTGGAGCTGGCTGGGAATGCTAGCAAGGATCTCAAGGTTAAGCGTATTACT CCCAGGCATCTACAACTTGCTATCCGCGGTGATGAAGAACTGGATACGCTGATTAAAGGAACAATTGCTGGAGGAGGTGT TATTCCTCATATTCACAAATCTCTGATCAACAAGTCTTCCAAGGAGTAGATTACTAATGGATCGTTGTAGCTGCTTGATG GAAAATTTCTGTCTCTACTAATTCTGAATCTCTTAGATGCTCTAGCTAAAAATGTAGGACCTATTATTTGTGGTTATGGT GCTGTTGACTGTGGATAAAACTTGATTTTCTGTTTCTCAGCTTATTATGGAACGACTTTCGATTGGGGATAATGTCATTT TTCTTCAATATTTGGATTTGCAATTTCATCATTTAATGTGCTGGAAAGTTGCTGGTTGAGGAGTGCTACTAACACCCTTT TAACTATACTCTAAACCCACCAAATTGAGAGTAGAACCTGTATTATATTCCATCGATCTCATGAATTTTAGTTAATAAAA TAGTGTTAGAAAAAGTGTATTAAAGAATGTGTTGCTAGTATGCTTAGACATGAACCATGGTATGTCTTGTTTTGTAATCA AACCTCCTCTTTGGTCTTGTTATGAGGCTTTATGCTTGTTACCTGTTCATACTTCTCAGAATTGGGAAGCCGTCGAGATT ATTTTCTGGTGACATTTTTGTATCTTATGTAAGTTTTTTTTCTCCTTCACTTAAAACAAGAGTGAACTCATCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGGGAAAGGGAGCGAAGGGGTTGATAACCTCCGCCAACAACAAGGACAAGGACAAGGACAAGAAGAAACCCACTTC TCGTTCTTCCCGTGCCGGTCTTCAGTTTCCGGTTGGAAGGATCCACCGGCTTTTGAAGTCAAGAACCACGGCTCATGGTA GAGTGGGAGCCACGGCTGCTGTCTACTCTGCTGCTATCTTGGAGTATCTGACTGCTGAAGTATTGGAGCTGGCTGGGAAT GCTAGCAAGGATCTCAAGGTTAAGCGTATTACTCCCAGGCATCTACAACTTGCTATCCGCGGTGATGAAGAACTGGATAC GCTGATTAAAGGAACAATTGCTGGAGGAGGTGTTATTCCTCATATTCACAAATCTCTGATCAACAAGTCTTCCAAGGAGT AG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGKGAKGLITSANNKDKDKDKKKPTSRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGN ASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 - –
SUPERFAMILY
SSF47113
11 110 100 4.54E-42
IPR009072
Gene3D
G3DSA:1.10.20.10
12 133 122 3.8E-54
IPR009072
PANTHER
PTHR23430
12 133 122 3.5E-80 –
PANTHER
PTHR23430:SF263
12 133 122 3.5E-80 –
MobiDBLite
mobidb-lite
13 28 16 - –
Pfam
PF00125
13 102 90 1.2E-19
IPR007125
SMART
SM00414
13 133 121 8.3E-73
IPR002119
PRINTS
PR00620
24 46 23 3.2E-43
IPR002119
CDD
cd00074
25 129 105 4.28196E-58
IPR002119
ProSitePatterns
PS00046
32 38 7 -
IPR032458
PRINTS
PR00620
54 69 16 3.2E-43
IPR002119
PRINTS
PR00620
69 82 14 3.2E-43
IPR002119
PRINTS
PR00620
83 97 15 3.2E-43
IPR002119
Pfam
PF16211
103 132 30 8.5E-11
IPR032454
PRINTS
PR00620
110 128 19 3.2E-43
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0266100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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