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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0284200 |
| Transcript ID | LotjaGi4g1v0284200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q91XA9|CHIA_MOUSE Acidic mammalian chitinase; TrEMBL-Plants: tr|A0A1B1J8W5|A0A1B1J8W5_MEDTR Class V chitinase b protein; Found in the gene: LotjaGi4g1v0284200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65643579..65645515) extracted from Lotus japonicus Gifu genome v1.2.
CGTCTCTTCCAACCTGTCTTCATGTGTATGTATATTTCATGATATATATTTCAACCATTTTATTTTAACATTATAAGACT GCAGACATGTTGGTCTATTCTCTTTAATATGCAGAACAGACAAACCTTCTGTCTGCATTTTTGGCTGATCGATCAAGTGT ATTATATTTATACACGTTCCATCTAGCTAAGTCTCCTCTCAAAGCAAAGAGTGGGAGCAAAAACCAAAGCTCATAACCAA AAATGGCAATCCTCAACCATATGCAGTTCTTCTTTGTGGCAATTCTCTTTGCTTTAACCACCAAAATTTCCACATGCACC ACCACTTCATCAGTCAAAGGCATATACTGGCTAGAACAACCCCTTTTCCCTTCTTCATCCATTAACACTTCACTCTTCAC CCATGTTTTCTACGCTTTCCTCCAACCCAACAATGTTACTTACAAACTAGATATTCCAACTTCAACCGCCGCAAAACTCA CCGCATTCACCGCCACAATGCAAGCCAAAACTTCTCCGGCGAGCACACTCATTTCCATCGGGGGAGCAGTCAGCTACAAC GCCCTCTTCGCCTTCATCGCCTCCAACCCCGCTGCGCGCGCCGCCTTCATCACGTCCACCATCAACGCCGCTCGAACGTT CGGGTTCGACGGGCTGGACTTCGACTGGGAGTACCCTCGAAACGCCACCGAAATGAACGACCTCGGAAGCCTCTTAAAAG ATTGGCGCCTCGCCGTCAATGCAGAGTCCTCCGCCACCGGCCTACCGCCGTTGCTTCTCACCGCCGCCGTGTACTTCGCC GCCGATGTCACCGTCGACGGCGTGGCGCGGACTTACCCGGTGGCTTCGTTTAACCAGAACTTGGACTTTGTCAACGTCAT GACCTACGACCTTCACGGGGCCTGGAGCAACGAAACCGGAGCTCCGGCGGGTTTGTTTGACCCGGATAGCAACCTCAGCG TGGCTAAGGGGTTGGTGTCGTGGATCCGGAGCGGGGCCATTCCGGCAAAGCTGGTGATGGGTTTGCCGCTTTATGGGAGG ACATGGCAGCTCCGGGATCCAAACCTACACGGAATCGGTGCGGAGGCGGTCGGGGTGGGACCCGGGTTAGATGGCGCGAT GGCATATTTTCAGGTGTTGGATTTTATTGAGGAAACGGGTGCTAAGGTGGTTTATGATGTGGGTACGGTTTCGGTTTATT CACATAGTGGGAGTAATTGGGTCGGTTACGATGACCTACAAACGGTGGCGGCAAAGGTTGGGTTTGCTCAGGCGCTTTCG CTTCGTGGGTATTTCTTTTGGGCTGCTGGGTTAGACACTACCGATTGGAAAATCTCCACACATGGTAATAGATTTACACA CTTTCTTGCGGACATTCAATCAACACATACTATAGTGTTGGTTCAACCGCCAAACATTTGCGACGGTTAATAACCGTTGC TAAAGTATGTGTTGGTTGAATCTCAATGGCAAATGTATTGTAGTTTGATTTCTCTTTTATTATTATCTTCCTATTGGAAT GAGTGTTAACAAATTCTTTTTGGTTGACAAAATGCAGCTTCGAAGGCATGGAGACTTGCATGATTGAGACTGGAGGAATG TATTGAAAGCTAACTTGCATGCTTCTGTCATCATTCTTTTCATCGTGTAGGAAAAGTTCGGACTTCATATTGGGCAAGAA GCCAATAACATAGATGATAACACGCACACTTGGTTTTCTTTTATTACCTAAATCCCTTGTTGAAAAAAGCATGAACGAGG ATATTTGTTTCTCTTTTTTCATGGAAAAAACGAAGTTATTTTAGTCAATTGTAAGTTATGAATAATTATAGTTTGTGATT CTTTGTTGAGTTCTATACTTCTACGTTACTCTTTTGGGATTTGTATCTCTGCGCCCTATCCTGCCTCTTCAGCATATAGA ACAACAACTTATAATCA
CDS sequence (LotjaGi4g1v0284200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCCTCAACCATATGCAGTTCTTCTTTGTGGCAATTCTCTTTGCTTTAACCACCAAAATTTCCACATGCACCAC CACTTCATCAGTCAAAGGCATATACTGGCTAGAACAACCCCTTTTCCCTTCTTCATCCATTAACACTTCACTCTTCACCC ATGTTTTCTACGCTTTCCTCCAACCCAACAATGTTACTTACAAACTAGATATTCCAACTTCAACCGCCGCAAAACTCACC GCATTCACCGCCACAATGCAAGCCAAAACTTCTCCGGCGAGCACACTCATTTCCATCGGGGGAGCAGTCAGCTACAACGC CCTCTTCGCCTTCATCGCCTCCAACCCCGCTGCGCGCGCCGCCTTCATCACGTCCACCATCAACGCCGCTCGAACGTTCG GGTTCGACGGGCTGGACTTCGACTGGGAGTACCCTCGAAACGCCACCGAAATGAACGACCTCGGAAGCCTCTTAAAAGAT TGGCGCCTCGCCGTCAATGCAGAGTCCTCCGCCACCGGCCTACCGCCGTTGCTTCTCACCGCCGCCGTGTACTTCGCCGC CGATGTCACCGTCGACGGCGTGGCGCGGACTTACCCGGTGGCTTCGTTTAACCAGAACTTGGACTTTGTCAACGTCATGA CCTACGACCTTCACGGGGCCTGGAGCAACGAAACCGGAGCTCCGGCGGGTTTGTTTGACCCGGATAGCAACCTCAGCGTG GCTAAGGGGTTGGTGTCGTGGATCCGGAGCGGGGCCATTCCGGCAAAGCTGGTGATGGGTTTGCCGCTTTATGGGAGGAC ATGGCAGCTCCGGGATCCAAACCTACACGGAATCGGTGCGGAGGCGGTCGGGGTGGGACCCGGGTTAGATGGCGCGATGG CATATTTTCAGGTGTTGGATTTTATTGAGGAAACGGGTGCTAAGGTGGTTTATGATGTGGGTACGGTTTCGGTTTATTCA CATAGTGGGAGTAATTGGGTCGGTTACGATGACCTACAAACGGTGGCGGCAAAGGTTGGGTTTGCTCAGGCGCTTTCGCT TCGTGGGTATTTCTTTTGGGCTGCTGGGTTAGACACTACCGATTGGAAAATCTCCACACATGCTTCGAAGGCATGGAGAC TTGCATGA
Protein sequence (LotjaGi4g1v0284200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILNHMQFFFVAILFALTTKISTCTTTSSVKGIYWLEQPLFPSSSINTSLFTHVFYAFLQPNNVTYKLDIPTSTAAKLT AFTATMQAKTSPASTLISIGGAVSYNALFAFIASNPAARAAFITSTINAARTFGFDGLDFDWEYPRNATEMNDLGSLLKD WRLAVNAESSATGLPPLLLTAAVYFAADVTVDGVARTYPVASFNQNLDFVNVMTYDLHGAWSNETGAPAGLFDPDSNLSV AKGLVSWIRSGAIPAKLVMGLPLYGRTWQLRDPNLHGIGAEAVGVGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYS HSGSNWVGYDDLQTVAAKVGFAQALSLRGYFFWAAGLDTTDWKISTHASKAWRLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| PANTHER | 16 | 373 | 358 | 3.0E-163 | – | |
| PANTHER | 16 | 373 | 358 | 3.0E-163 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 375 | 350 | - | – | |
| SMART | 30 | 358 | 329 | 4.4E-77 | ||
| CDD | 31 | 363 | 333 | 1.46285E-127 | – | |
| SUPERFAMILY | 35 | 363 | 329 | 8.88E-62 | ||
| Pfam | 44 | 358 | 315 | 2.1E-65 | ||
| Gene3D | 45 | 359 | 315 | 1.9E-93 | – | |
| ProSitePatterns | 135 | 143 | 9 | - | ||
| Gene3D | 263 | 329 | 67 | 1.9E-93 | ||
| SUPERFAMILY | 264 | 329 | 66 | 1.39E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
Expression pattern of LotjaGi4g1v0284200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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