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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0284700 |
| Transcript ID | LotjaGi4g1v0284700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase, putative; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q13231|CHIT1_HUMAN Chitotriosidase-1; TrEMBL-Plants: tr|A0A1J7GHK5|A0A1J7GHK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0284700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65699065..65702704) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGAGGTGTGTATGCAAAACAAATTCCCCTAAATAGGGGTCTATTTGCTTGGGCTAAGTTTTTTTTGTTTTTCAACAC TAGTTTTTTTTTTTTTTTTGGTCAAAGGTGTAAAGGTTATCATTCAAAGTTTGCCTAACGGCACTTACATCAGTGGGACT TTTCTCCCAAGAAGTGATTTTGCAATGCATAATCAGGACAGAAATTAAGCTTAAAGCATGCTCACTCATGCTGATCTAAG AAACCAAACAAACAAAGAAAAATCATACAGACTCTTAAATCCTGGGATCACCAGCACAACAACTCAACTTTCAGAACAGT TTTAAAGTTTTAAGCTACAAATACAAATTTAAACATCTGCTCAATGCAAATCATCCGACTCTGCCGGAGTTGCACAAACT GAAAGCCTTCAAAGAAGCAAAACAAAGCTTCAACGGCAAGACCAAGAGAAGTCAAGTTAGCAGTACTAGCACCAAGGAAG GAGGCATCGGATCTTCATAGCAGCAGAACAGAGGGAGCGGGTGGTTGCGGTCGATGCAGAGAGCACGCAGTTTCGGCACA GCAACGGCGGCGGCGGTGGCGCATCAAAGCTTCAGGATCTGGAACAGCTACAACCCAACCCTTCTCAACCCAGAGCTTTG CCAGGAGGGGCGTTTGGAGAAGGGGGCCTCAGGTCGGGGTTGAAGGGGCACTCAGAGCAGCGAAGACGACGAGGTGACGA CCGCAACATCTAGAAGCCAGATCTGCGTCTCTGTACACGGTGGGAGATGGGAGATGTAGGAGATGAAACCAGCCAAGGTG GGAGTAACAGCGAAGTGAAGGGATGAAGTGGTGGCCAGAGAGGAGGACAACTAGGAAAGCAAGAAAAACCCACTTATTTG GGTAGAAAATCCACCTGATGTGGAAGAAATCCACCTAATGTGGAAGAAACCCACCTATTGTGGGAGAAAAGACCTAGCAA GTAGGAGAAGAACCTCCCTAGAGGAGGAGGATCCCCCAAAGGGGGAGGAGCCCCCAAGGGGGAGAAACGGCGCTGCACAA AGAAGCAAAAACCTAGCAGAGCGTGTTTTTACCTACCAATCTTCAACTTGAACCCTGTTGCTAGATACATAAATTTTACA CTAGCTTAGGATTGATAAAAAAAATAACTAGCTTGGGCTAAATTTCCTTTTATGTTCTGTCGCACTTATGGACCTAGCCC ACACTTTTGGTATGGACGTAATGTACATATTATTATTTAACCAAAAAAAATTGCTTATTGGTCATATTTGACCACACAGA AAATACTTCTTGGTCATACTTTCCGTCCACATATCATCAATCATCAGAACAAGAAAACGGCACCTGACGCAATACGTATC CTCCTGCGATTTCCTACCTCAGAAAGTCCAAATGGCAGGCACCGTCGACGGAGCGCTGCTACTTCACACGCCATTTAGCG CATTGACTTATCATAATTTTCAAACCCATTCACCACATAACAAAGTCAACCAACCAAAAAGTTTTAACACAACTCGTAAA TAGTCGAGCTACTTAACCATTTAGTCAAGTGTTTGAGCCCGTATAAAAAATGATTTACTGAGAAATTTCTTCTCACTCAA CATGACTTTCGTCGGGGATTAGTCTCATATTTAGCTATGTTTGTTTTTCAGTTTGGAAGTTCGTTTGGGGCATTGGACTA TAAAAAATGATTTACTGAGAAATTTCTTCTCACTCAACATGACTTTCGTCGGGGATTAGTCTCATATTTAGCTATGTTTG TTTTTCAGTTTGGAAGTTCGTTTGGGGCATTGGACTTTAGGATCACACGTTCCAATGCCTCAAACGTGAAAGAGGTTTTG GACCTTAATTAGGTAAAAACACTTTTAAACTGAAAACCAAACAGACACTTTATCATTGGTCAACAAGGGTATGTAAAGAA AAAGTCAACCAATATAATCCTAGACATGATTCCAACTTGAGTTTTCTTTCTCCCAATCCAGGAAGCCAAAGAATAGTCTT GTGAAACTCATTGAATTACTCAATCACATACCATACCTGAACCTATAAATGTTAACCAAACTCAAATTCAAATCCCACCA CCATCATCCAAATGAAGAACACAATGACCAACACATTTCTATTTTCCCTCCTTATTCTACTCCAACTCACATTCTCCTCC GCACAAACCACCGTAGTCAAAGGCGGATACTGGTATTCCGACGCCGGCCTCGCCGCTTCCGACATCGACTCCACACTCTT CACCCACCTCTTCTGCGCATTCGCAGACCTCGACACCACCACAAACCAGCTCACAATCTCATCCTCCAACGCACAACCCT TCTCCACCTTCACCGAAACCGTTCAGCAGAACAATCCCTCAGTCAAAACCCTCCTCTCCATCGGCGGCGGCGGCGGTTCT TCCTTAGCACAAACCTTCTCCACAATGGCAAACCAATCCAGCACCCGCAAAACCTTCATAGATTCCTCAATTCAAATCGC AAGAGCAAACAACTTCCACGGCCTCGATCTCGATTGGGAGTACCCTAACTCCGACGCCGACAAAACAAATTATGCTTCAC TCATCACAGAATGGCGAGAAGCGGTTAAAGAAGAATCCAGAACCTCAGGGTTACCGGAGTTGCTGTTAACCGCCGCGGTG GCCGGATCTGACCAGATTTCATTGCTGGAAAACTACCCTGTTCAAGAAATTTCACAAAACCTGGATTGGGTTAACGCTAT GGTTTACGACCTTTTCATACCGGAGGGGTACCCAACGGAAACGCAACCACCGGCGCCGTTGAAGAATCCGATAGGTCAAT TCAGCGGAGATCAGGGGATTTCGAAATGGGTTGAACTGGGGCTTTCTGAGAGCAAATTGGCGATTGGGTTGCCGTTTTAC GGTTACTCGTGGCGGTTGGTGAGCGGTGATGAGCATGGGTTGTTTGCGGCGGCGAATGGCGCGGCGGATTCTGGTGGCGG TGCGATTGGGTATGGGGATATAGTTAGGGATTATGTGAATAAGGGGGCGCAGAGGGTGTATAATTCAACGTTTGTGACGG ATTATTGTTATTCTGGGACGACTTGGATTGGTTATGATGATACTCAGAGTGTGACTGCGAAGGTGGATTATGCTAAGGAG AGAGGGTTGGTTGGGTATTTTGCTTGGCAACTTGGGGGTGATGATGATAGTTGGACACTTTCTAAAGCTGGTGAGTAATC AAATTTTCAATTCTGAAACTTTATATATGTGATGGATGATGTCTTTTCTAATTCCCTCATACTTTTGATCTTTCAACTAA ACTATCTTACTAAGGGATACTATTGATGTTTTTGCAGCTTCTAATGCATGGGGAGCATAAGAACGAAGGTGAAATGAAGA CTCAGCACATATGTTGAGGCTATTATATATGGGATATACATCATTGGTTTACTTTGTAATAATTAATTAATAATGAGGCA CAAATGTTTGTGTTTCAAGTTGTATGTGTATACAAGATAGATGTTATACGAATTTTATAATATTTTATAATTATAAGGAG AATTTAATAGATATATACGGTTAGTGTAAAATAGTTTTACACTGATATCAAATTGAATTCCGCCAAATAAGCAAATATGT TTTATTTAAATTAACATTAAAAATGAATGTAACTCTCTCC
CDS sequence (LotjaGi4g1v0284700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACACAATGACCAACACATTTCTATTTTCCCTCCTTATTCTACTCCAACTCACATTCTCCTCCGCACAAACCAC CGTAGTCAAAGGCGGATACTGGTATTCCGACGCCGGCCTCGCCGCTTCCGACATCGACTCCACACTCTTCACCCACCTCT TCTGCGCATTCGCAGACCTCGACACCACCACAAACCAGCTCACAATCTCATCCTCCAACGCACAACCCTTCTCCACCTTC ACCGAAACCGTTCAGCAGAACAATCCCTCAGTCAAAACCCTCCTCTCCATCGGCGGCGGCGGCGGTTCTTCCTTAGCACA AACCTTCTCCACAATGGCAAACCAATCCAGCACCCGCAAAACCTTCATAGATTCCTCAATTCAAATCGCAAGAGCAAACA ACTTCCACGGCCTCGATCTCGATTGGGAGTACCCTAACTCCGACGCCGACAAAACAAATTATGCTTCACTCATCACAGAA TGGCGAGAAGCGGTTAAAGAAGAATCCAGAACCTCAGGGTTACCGGAGTTGCTGTTAACCGCCGCGGTGGCCGGATCTGA CCAGATTTCATTGCTGGAAAACTACCCTGTTCAAGAAATTTCACAAAACCTGGATTGGGTTAACGCTATGGTTTACGACC TTTTCATACCGGAGGGGTACCCAACGGAAACGCAACCACCGGCGCCGTTGAAGAATCCGATAGGTCAATTCAGCGGAGAT CAGGGGATTTCGAAATGGGTTGAACTGGGGCTTTCTGAGAGCAAATTGGCGATTGGGTTGCCGTTTTACGGTTACTCGTG GCGGTTGGTGAGCGGTGATGAGCATGGGTTGTTTGCGGCGGCGAATGGCGCGGCGGATTCTGGTGGCGGTGCGATTGGGT ATGGGGATATAGTTAGGGATTATGTGAATAAGGGGGCGCAGAGGGTGTATAATTCAACGTTTGTGACGGATTATTGTTAT TCTGGGACGACTTGGATTGGTTATGATGATACTCAGAGTGTGACTGCGAAGGTGGATTATGCTAAGGAGAGAGGGTTGGT TGGGTATTTTGCTTGGCAACTTGGGGGTGATGATGATAGTTGGACACTTTCTAAAGCTGCTTCTAATGCATGGGGAGCAT AA
Protein sequence (LotjaGi4g1v0284700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNTMTNTFLFSLLILLQLTFSSAQTTVVKGGYWYSDAGLAASDIDSTLFTHLFCAFADLDTTTNQLTISSSNAQPFSTF TETVQQNNPSVKTLLSIGGGGGSSLAQTFSTMANQSSTRKTFIDSSIQIARANNFHGLDLDWEYPNSDADKTNYASLITE WREAVKEESRTSGLPELLLTAAVAGSDQISLLENYPVQEISQNLDWVNAMVYDLFIPEGYPTETQPPAPLKNPIGQFSGD QGISKWVELGLSESKLAIGLPFYGYSWRLVSGDEHGLFAAANGAADSGGGAIGYGDIVRDYVNKGAQRVYNSTFVTDYCY SGTTWIGYDDTQSVTAKVDYAKERGLVGYFAWQLGGDDDSWTLSKAASNAWGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 372 | 371 | 4.1E-166 | – | |
| PANTHER | 2 | 372 | 371 | 4.1E-166 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 373 | 349 | - | – | |
| CDD | 26 | 363 | 338 | 6.33839E-123 | – | |
| SMART | 28 | 357 | 330 | 2.7E-97 | ||
| SUPERFAMILY | 30 | 372 | 343 | 4.33E-66 | ||
| Pfam | 32 | 357 | 326 | 5.1E-78 | ||
| Gene3D | 44 | 357 | 314 | 1.5E-106 | – | |
| Gene3D | 262 | 328 | 67 | 1.5E-106 | ||
| SUPERFAMILY | 263 | 328 | 66 | 7.75E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
Expression pattern of LotjaGi4g1v0284700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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