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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0309700 |
| Transcript ID | LotjaGi4g1v0309700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V489|A0A0U2V489_LOTJA Cytokinin oxidase/dehydrogenase 2; Found in the gene: LotjaGi4g1v0309700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68577566..68583197) extracted from Lotus japonicus Gifu genome v1.2.
AAATAGTGCACTACCAAATTCAACTCCTTTTAATTTCTCTCCACAAATGGCAAGGCACTATACACTTTCAAAAGCTTTAA TTTTGCTATGGCTTAATACCATAGTGCACACACATGTACTATCGCAACCATGGTCACCACTAGATGCACCTAAAGAAATA GCCCAGCAACTTATTCGTGACCCTGTGATCCTTTCACTAGCCTCAACCGATTTCGGCCACATAGTTCACAAAAACCCGTT TGCGATTTTCACTCCGTCGTCCGTTAAGGACATTTCCAAATTGATAAAATTCTCAAAAACTCTTCCCATTCCGTTCACTA TAGCTCCAAGAGGGCAAGCTCACTCGCTTCGTGGACAAGCCATGACAAACAATGGGCTTGTGGTGAATATGACTGCATTG AATGAGTTTAGAAATGGGAGTGGGATTGTGGTGTTTGATAAGGAAACTCCTCCATATGTAGATGTTCGGGGTGGGCAAAT TTGGATTGATGTGCTTCATGCTACGCTTCAACATGGACTTACACCCCTCTCTTGGACTGACTACTTGTATCTATCAGTTG GTGGAACTCTCTCCAATGCTGGGATTAGTGGCCAAACCTTTCGATTCGGTCCTCAGATTTCCAATGTTCATGAATTGGAT GTTGTTACGGGTACGGGTTATTCTTTTCCCTAATAACTTTTTCTTAATGAGTTTTAAATTTTAAATTTATGATAGTGAAA TTTGTATGACTAAGACAAAAAAAAAAATCACATATAAAAGTTTTCGAAAGGCAATATAAAGGTATCATTTTCACACAAAT TATACACACTTAAAAAAGTGTTTAGATATTATTTGATAACTTTAATAACTTAGTATTTAGATTATATTAATTATATGTTT GATTCTCCTTAGATAATGTCTCGAGATCAAGTGTGGAAGTACTGCTCTAGATGTTTTCCGCCTATGTATATGATTGTTTC ACGTGAAGAATACATAGTTGTAGAGAAAAACAACTGAATAATTTGGTAATCACATGTTAGTTAATTCAATAACATGTAAT AAGTGGGCAATCTACAACCTAAAAAAAGAATTAAAGAGATATACACCGTCAGTGTAAACAGATTTTACACAGTCATTCAA TTGAATTATGCCACATCATCAAATAAACCTTTGCTTTAATTAAAATTTAAAATGAAAGTTATTATTCCTCTTACATTACA TGTTGTGATTGGTTGTCAGTGTAAAACTGGTTTACACCGACCATGCATATCCATGAAACTCGTAAAAAAAACTATATTCA TAATTAAATCATAACTAAAAGATTTTTGAAGCTAATTGAGTATTATAGTTAGTAACTATATTAGTTTCAATAAATTCGAA CAAACTCAAACTAAATTTTTTTATTGGTTCAAATATTTAAACACCCAAAATCTTTAACCCAATCCAATTACACCACTAAA CTCACTTTTGGGATTTGCCCTAGACAAATCCGTAATAAGAAGTTATTATTAGGTTTTAAACTGGAGTTATTCTTTGAATT AATATTTAAACTTGGCTGCAGCAGCATATGTCAAGGTTATTTTGTGGGTTCCATGGTTGTTGGATTAAGCCTTTGGTGGG GGTTGTGCTATTTGTGTGGGGTGTCATGTTGGGGTATTATAATAATCATGTTGATTGACATGCCTGTAGAGTACATGTTG TACTCTTTTTTTTTTACCTAGATTTTCATTGAATTTTTCCTAGGAATATTTTAATGAGGCACAATATTCTCTATGTTTTA ACTTGCCTGGGAGGTTTTTTTTTTTTAGCTAGTGTCCTATCTCTTGAGGGGGTTGCCCTCAAATAATTTAATCATTCAAA ATATATATATATATATATATATATATATATATATTGTTTAACAAAAACTCCGTAAGACTAGATGTTCTTTTTTTGAGGTA GATAAGATACATCATATATAAAAGATAATAAGTTGATTTTATTCAATCAAAACAGATTCAACGTATTACGTTGATCCAAG CCATATCTCAATGTAAGTCACATCATATCTTTGTAGAAGATTTAATTTGTCTCTTTATCCAGTGAAATTTGACCATATCA TTAATTAAAAGTAATATAGTATATAACGAAACAAAGAAAATTATAACATTAATAGATATTTAAAATTTATTCTGACTCTA TATATAATAAAAATATAATTGCTATAGATGGTTGATTATTAATCGAATTTAAGTATTGATTAATAAAATGATTCATGAGA ATGAAGTGTTGATGTATATGGTTTCATTAAGTTTAATAATGAAGTCTATTGGTATTTCTATCAGAAAAGAATAAAACTTG TCTACTTTATATTTTGGAGTAAAAAATAATGGAATTTGTTTAATTTTTTTTTATCAAAATAGTAATCATAATCATTTCTA TTTCTATAAAAGATTTGTTTTTAATATCGTCCACCGTAAGCATATATGCTAGAATGTCTTTAAAAATGTCTTTGGTTTTT TGGTTTTGTTTTGATGTGCAATGTCTTGATTTTGCGCTAGTATTTTTATTTATTAATTTCGGGGTTCTTAGCATTTTTGT CCATTGACAATCTTAATATATAAAATTAAAATTAATGTTATTGTCACGTGACTTCATCGTATATTTATAAGGATTCCATG TCAATGATTTGATTAAATCAAATTAAGATAGGCTGCGACATAAATACCACACCGTTACCGTTATTAACTAACTATTTATG TGGACCTACCTGAGCCAATAAATTGTTGGCACAACAGATTTAATTCTTTTTCTTTTGTATCGCAATGTAGTATTTTCCTT TCTAATGAATGTTATCTCTCCACATTAACAATTGTATTTGTTTCCCTGTTTAATTTAAAGAAAGTCCACTTTTAATAAAT TAGAAGTAAACTCTTTTTGAGGTCTAAGGAGTGATCTACTACACCATATGCTAGAAAAAGAGGTCTATTCTGCCTCCAAA AATATTTTTGTTTTAAGGGAAATTTCCTAGTTTTTACTATTTAATAATAATAATAATGGTAGGAGCTGGGGACATATGGG TTGGGTAGGGGTGCAGAGATCGATTCCTGGCAGGTGCAATTTATCTTTCCGATGTAAAAAAAAAAACTACATAAAAGAAA AGAAGTTATCTATTAAAAAGACTACCATAATTTTCCTGAATGTGCAAAAGGAATCTGGTTCAAAATGAAGGATTTTGTTA TATTTTACTTATTGTAGAAATTAAGCCCTTTTGGGCTTTTTGGTGAGGCTGCGTGTCCAGTTTTAGAGGGGTGGGTTATT GGTCTTTTGTTTCATCTTTCCCTTATTTCTTGAAATCTTTTTCTACTTTTTTTTTCTTGTATTTAGAATTGAAATACCCC TAGTATTTCTTCTCTGCATTAATACAATAACTTGCTTATAAAAAAAGAAAAAGAAATTAAGCCCTATTGTCCTTTAAGAA ACTTATGGTCATAACTCATAACTCATACATCTTTAATGTATATGTTTTCTTTTGCAACACTTAATAATATACATGTTTAT ACTCTAATTCTGCAGGGAAAGGTGACACCGTGACTTGTTCTACAAAGAAAAACTCAGATTTATTTTACGCCGTTCTTGGA GGATTGGGCCAATTTGGGATTATAACCAGAGCAAGAATAGCTCTTGGACCTGCACCTACTAGGGCAAGTATCATTCTCAT CTCAGTTCCTATTTCTCTTTTCACAGAAAAAAAAAGCAATTAATACAATTAATCAATTAAAATTACTTTTAAAACATTTA ACTTTTTTTAACTATTTAATTGCGGGGACTTTATTCTAGCATTTGAAAATAATTTAGTGGACTATTTACATAAACAAATA ATAGAAACAAACTTTTTGGACTCCCTCAACAGATAGAGAAAACAGAGGCTTTGACAAATATACTAGCTAGTCTTTTGAAT AAAGGAAAAACAGATATTATACATGAATCTTTCTTGTTAGGTTGTCACAATCACAATCAGTTCTTGCTAGTACTTCATTA TTACAAGTCAAACATAGAAAAATGTTTAATCATATGATCCTTAATTAATAACAAAATGGATTGTTTAATTGCTTTCAGGC GAAGTGGCTCCGTTTATTGTACAATGACTTCTCTGCATTTTCTAGAGACCAAGAACATTTAATCTCATTCAATGGAAGAA ACGATACGAATGCACCTGATTATGTTGAAGGCCAACTTCTGCTGAATCAACCGTCACAGGCCCTATCATTCTATCCAGGA TCTGATCAACCACGCATAACTTCACTAATAACCCAATTTGGCATCATCTATATCATAGAACTTGTCAAATACTACGATGA TAGTTCTGAAGATCACATTGACCAAGTAATTAATTTAATCATGCTCTTTTCATTTCTTAAGTTTGGAAGCATTTTTTTAT GATTATAGTTTATTGGAAAGATTTGACTTACATGTTCTATTGTGGTTTTCTTGGATTTATAGGAAATTGAACTTTTGACT CAGGGATTAAAGTTTGTTCCTACGTTTATGTTCGAAAAGGATGTCTCGTACGAACAGTTTCTGAACAGAGTTCATGATGA TGAGCTTCTTCTCAGGTCACAAGGATTGTGGGATGTTCCACATCCTTGGTTAAACCTCTTTGTTCCAGCATCTAGAATCT CTGATTTTGATGAAGGTGTGTTCAAGGGCATAATTCTAAAGCAAAATATAACAGCAGGGCTTGTGCTAATCTACCCCATG AACAAAACAAAGTAAGTTTTATGACATTGATTACAGATATTGAATACTATGTATATGTTAATTTGTGGGCTTATCTTTCA AAAAAAAATTGTGGGGATTAATTAATAGAGTTAATTAAAGAATTTCAATAGGTAAACATACAATTCTGACCGACATTCAT CCAACATATGACTTAGTGGCAATTAACTGCCACTATCATTAGCAGAGTGGTTACAAACTGCCGCTAAATTGCATGTCGGG TGAATGTCACACTAGACCTGTAATTTGGCGTAGCATTTTTCCTAATTAAAATGCATGAATTGCAGGTGGGATGACAAGAT GTCAGCAGTTACACCTGATGCAGATGTTTTCTATGTGATATCTTTTTTGCGTATAGCTAATTTTGAAACATTGGAAGCAC TTCAAGTTCAAAACCAACAAATAATACAATTATGTGTGGATATTGGTATAGGGATGAAGCAATATCTTCCCCTAATCAAA ACACAGGAAGAATGGGTGGCACAATATGGCCTCAAATGGAAAACCATCCAAGACAGAAAAATTCAATTTGATCCCAACAA AATATTGTCACCTGGACAAGGGATTTTCAATTAGCTAAGAAAAAAATAAGAAGGTAGGTTCTAAGTTCCTGTTTCTTATT TAATCTTTTTTATATTAATTTGTTGTACAGTAATTGAATAAGCAGTTCAAGAAATAAATTTGTATGATGAATTGGATTGC TTTCACTTGATCTTGTCTTTTATTTCTCTTAAGGGTAAATTAGGTTAGTAGCCTAGTAGTTATATTGTTATCCTCAATTG TATATAAAGTATTGTGATGTCACATGTATGATCACCCTTAATTCCAGTGATAGATTTGTTAGTGTAAATTGTAATTTTTT CATTATGATATGTCACTAAAAAAATTGAGCTG
CDS sequence (LotjaGi4g1v0309700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGCACTATACACTTTCAAAAGCTTTAATTTTGCTATGGCTTAATACCATAGTGCACACACATGTACTATCGCA ACCATGGTCACCACTAGATGCACCTAAAGAAATAGCCCAGCAACTTATTCGTGACCCTGTGATCCTTTCACTAGCCTCAA CCGATTTCGGCCACATAGTTCACAAAAACCCGTTTGCGATTTTCACTCCGTCGTCCGTTAAGGACATTTCCAAATTGATA AAATTCTCAAAAACTCTTCCCATTCCGTTCACTATAGCTCCAAGAGGGCAAGCTCACTCGCTTCGTGGACAAGCCATGAC AAACAATGGGCTTGTGGTGAATATGACTGCATTGAATGAGTTTAGAAATGGGAGTGGGATTGTGGTGTTTGATAAGGAAA CTCCTCCATATGTAGATGTTCGGGGTGGGCAAATTTGGATTGATGTGCTTCATGCTACGCTTCAACATGGACTTACACCC CTCTCTTGGACTGACTACTTGTATCTATCAGTTGGTGGAACTCTCTCCAATGCTGGGATTAGTGGCCAAACCTTTCGATT CGGTCCTCAGATTTCCAATGTTCATGAATTGGATGTTGTTACGGGGAAAGGTGACACCGTGACTTGTTCTACAAAGAAAA ACTCAGATTTATTTTACGCCGTTCTTGGAGGATTGGGCCAATTTGGGATTATAACCAGAGCAAGAATAGCTCTTGGACCT GCACCTACTAGGGCGAAGTGGCTCCGTTTATTGTACAATGACTTCTCTGCATTTTCTAGAGACCAAGAACATTTAATCTC ATTCAATGGAAGAAACGATACGAATGCACCTGATTATGTTGAAGGCCAACTTCTGCTGAATCAACCGTCACAGGCCCTAT CATTCTATCCAGGATCTGATCAACCACGCATAACTTCACTAATAACCCAATTTGGCATCATCTATATCATAGAACTTGTC AAATACTACGATGATAGTTCTGAAGATCACATTGACCAAGAAATTGAACTTTTGACTCAGGGATTAAAGTTTGTTCCTAC GTTTATGTTCGAAAAGGATGTCTCGTACGAACAGTTTCTGAACAGAGTTCATGATGATGAGCTTCTTCTCAGGTCACAAG GATTGTGGGATGTTCCACATCCTTGGTTAAACCTCTTTGTTCCAGCATCTAGAATCTCTGATTTTGATGAAGGTGTGTTC AAGGGCATAATTCTAAAGCAAAATATAACAGCAGGGCTTGTGCTAATCTACCCCATGAACAAAACAAAGTGGGATGACAA GATGTCAGCAGTTACACCTGATGCAGATGTTTTCTATGTGATATCTTTTTTGCGTATAGCTAATTTTGAAACATTGGAAG CACTTCAAGTTCAAAACCAACAAATAATACAATTATGTGTGGATATTGGTATAGGGATGAAGCAATATCTTCCCCTAATC AAAACACAGGAAGAATGGGTGGCACAATATGGCCTCAAATGGAAAACCATCCAAGACAGAAAAATTCAATTTGATCCCAA CAAAATATTGTCACCTGGACAAGGGATTTTCAATTAG
Protein sequence (LotjaGi4g1v0309700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARHYTLSKALILLWLNTIVHTHVLSQPWSPLDAPKEIAQQLIRDPVILSLASTDFGHIVHKNPFAIFTPSSVKDISKLI KFSKTLPIPFTIAPRGQAHSLRGQAMTNNGLVVNMTALNEFRNGSGIVVFDKETPPYVDVRGGQIWIDVLHATLQHGLTP LSWTDYLYLSVGGTLSNAGISGQTFRFGPQISNVHELDVVTGKGDTVTCSTKKNSDLFYAVLGGLGQFGIITRARIALGP APTRAKWLRLLYNDFSAFSRDQEHLISFNGRNDTNAPDYVEGQLLLNQPSQALSFYPGSDQPRITSLITQFGIIYIIELV KYYDDSSEDHIDQEIELLTQGLKFVPTFMFEKDVSYEQFLNRVHDDELLLRSQGLWDVPHPWLNLFVPASRISDFDEGVF KGIILKQNITAGLVLIYPMNKTKWDDKMSAVTPDADVFYVISFLRIANFETLEALQVQNQQIIQLCVDIGIGMKQYLPLI KTQEEWVAQYGLKWKTIQDRKIQFDPNKILSPGQGIFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 7 | 518 | 512 | 9.5E-271 | – | |
| PANTHER | 7 | 518 | 512 | 9.5E-271 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 518 | 492 | - | – | |
| SUPERFAMILY | 41 | 240 | 200 | 1.68E-41 | ||
| Gene3D | 52 | 518 | 467 | 9.3E-195 | ||
| ProSiteProfiles | 60 | 241 | 182 | 15.936 | ||
| Pfam | 66 | 210 | 145 | 3.4E-19 | ||
| Gene3D | 115 | 243 | 129 | 9.3E-195 | ||
| Pfam | 242 | 517 | 276 | 9.7E-105 | ||
| SUPERFAMILY | 242 | 518 | 277 | 7.85E-79 | ||
| Gene3D | 245 | 477 | 233 | 9.3E-195 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cytokinin metabolic process | The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Cytokinin dehydrogenase activity | Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi4g1v0309700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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