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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0313000 |
| Transcript ID | LotjaGi4g1v0313000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pleiotropic drug resistance ABC transporter; TAIR: AT3G53480.1 pleiotropic drug resistance 9; Swiss-Prot: sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3; TrEMBL-Plants: tr|A0A151SSF9|A0A151SSF9_CAJCA Pleiotropic drug resistance protein 3; Found in the gene: LotjaGi4g1v0313000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68967049..68972812) extracted from Lotus japonicus Gifu genome v1.2.
AGAGCTTTGACTCCAAGAGGGATAACTCAAGGCCATGGCTTCACCTTTGACAGAGATGCTGACTCTTTTGTTGAGGAAGA TAGGGAGCTTCAGTCAAAGTGGGCTGCTATTGAGAAACTTCCCACTTTCAAAAGAATTCAAACTTCTTTTGTTGATGTTA CTCAGGAGGAGGGTGTAGGCACCAGCAAAGAAGCAGATGGCAGAAGGGTAATTGATGTCACCAAGCTTGGAGCGGTGGAG AAGCGTTTGTTCATAGATAAGCTCATTAGGCACATTGAAAATGATAATCTTCAACTTCTGCAGAAACTCAGAGAAAGGAT GGACAGGTATTTACAGTGGCTCATTCATTCATGCTGTTATTACAAATATTTGGTAGATTAATTTGTAGAGTGGAGAATCA ACAACCCTTCATATTCTATAGCATGTTTGGATCAGTTTATTTTTTCTCAGAATCAATTTTGACAAGCTCAGAGAATCTTC TCCCCAGAATTGATTTTGACTTTAGAAGGGTTTCCAATTCTGAATAGGATAGCCTTTGACTTGTGGTCAATTTTATGGAT GGATGGAGCACTGCTTTTGTTGCTCCCTATGTGGGTCACTTTATATTTGTCTATCAGCACTGAAAGTTTAGAAATTGGAA ACTTCCTTTTTTGCTTTCCCCGGATTCTGTTTACCCTTTTATTGAGATTCTCAGTAAGATCATATGGAGATATAAACTTC TAATTACTAAAGAGTCACTATGTGTCATTCTGTTAAAAGAAGGAGCGGGGGAGCGGGTACTGACTACGACTAAGTGCATG TTTGGAAACTCGTTAGGTTTCTGACAGAAGCTACTAGGTGTAGCTTTTGTGAAAGTAGAAGTGATTCTAGAAGATTTCAA CGTGAAAACCAAACATGTTGTAATACAGGTTCATTATTTTCAAGAATTGACATTGTTGTTTTCAGAGTCAATGTGAAGTT ACCTACTGTGGAGGTCAAATACAAGAACCTAAATGTAGAAGCAGAATATGAGGTTGTTCAAGGGAAGCCACTCCCTACTC TATGGAACTCTTTTTCCAGCTTTTTGTCAGTGAGTATGCTTCCTTCTTGAACCTAAACATGTCAGCATAATGCAAAACTG AGTAATATAAAGCAATGTATGAGATGAAGATTAAGCAAAAGCAAAAAAAAAAAATTTACATCAGTTCATGCAAACATGGG CTAATTTGTCATTTGAACAGGGTTTCATGAAAACTATATCATGCACTTCACAAGGAGCCAGTATAAGCATTCTGAATGAT GTCAGTGGCATCATAAAGCCAGCAAGGTAAGTGAATCTCTTATATGTGTATGTTACTTTAGAACAATATTTTTTTAGCTA GTTAGTGACAAAATAATGAAATATTAAAAAATGCACATTAAAGTATGCCTCAAGCACTTGCATTTGAGGAGCCTTTCAGA ATTTAATTCCTTACACAACAAAAGAGTAGTGGGACAAAAAAACAAAATGTTAAAAGTTTACAATACAAGGGATCAAATTT CTAAGTCGTCAAAGATGGTTCGAGTGCAGGCTTACTCTTCTTCTTGGTCCACCCGGCTGTGGGAAAACAACCTTGTTATT GGCATTGGCTGGAAAGCTAGAGCAATCTCTCAAGGTCAGTGTGTAAGCACAATAATATAGAGTGAAATTATTAAACAAAT TTATTGACTTAAAGTGACATTTTGAGCATAACTTAAACCAATCAAGAATATGCCTAACATCACAATTGATGCTTCTTCAT TCTTGATAGAATTCTAGTAGTCTTTCAGAAACTAATGTAAGGCATTCAACCAGCTGAATTTCCCTATACTGCAGTCCCAG TAACATCCTACCACGTTTACTTATCCTCAGGTTTCTGGAGAAATCTCTTACAATGGTCACAAGCTAGATGAATTTGTCCC TCAAAAAACATCAGCTTACATTAGCCAGTATGACCTGCACATTCCTGAGATGACAGTGAGAGAAACAATTGACTTTTCAG CACGCTGTCAAGGGGTTGGAAGCAGAGCTGGTAAGGTTTCTGATTTATTCAATCCTAGATTATCCAAAAAGTTGTAACTA ATACAACAGCAGTAGTTATTCATATATATCCTTTGTACTCTAGATATATTGGCTGAACTCAACAGGAGAGAAGAAGAAGA AGGAGTCATCCCTGACCCAGATATTGATACCTATATGAAGGTAATTGTAGTAAGGACAACTTGTATGTCGTAGTTTAAAA GCGTCCAATTGAAAAATATAACAAGACTTTTGCAGGCAATTGCAGTTGAGGGACAAAGCGAAAATCTTCAAACGGAATAT GTTTTAAAGGTACATCTGCTTCAAGCAGGGTTGAGTTAGAGTGCACAATTACTGGGAGTCTCACTTAAGATGTTCTATTA TTATTTTAACATGTAAAATAAAACTTTTATGTCCTAGATTCTTGGACTGGATATGTGTGCTGACATACTGATTGGTGATG CACTAGAGAGAGGCATTTCAGGTGGACAGAAGAAAAGGCTAACTACAGGTATCTAGAAAGATATATATTGTTTTCTTTGT CATTTTACCGCAAATGTATTAAATAAAGATAACTGAAAATGTATGAGAAGACTCACCTCTTAACAAGACCAGTGATATAA CAAAGGCTAGTGAAACTTCTGCTTGAGCTGCAACTGCGAGCGCACTAATCATTCTTCATAAATAATCTGTTCCTTAATGG CAGGTGAGATGATTGTTGGTCCCATAAAAGCTCTTTTCATGGATGAAATATCAACTGGCTTAGATAGCTCCACAACCTTT CAAATAGTTACATGTCTCCAGCAATTGGCACATCTCACAGATTCTACTGCAGTTCTTTCACTCCTTCAACCAGCACCGGA AACCTTTGAGCTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGTCCCTGCCATCAAGCAATTC AATTTTTTAGGGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGAGTGGCAGACTTCCTTCAAGAGGTGAGATAACAAGCC GAAGTGAATTTCCACTTTTGTTTAATCTGACCTCATAAACTCACAATCTAGAAAATTCATCCTTGTACAGGTCATTTCTA AGAAAGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACACTTATGTTTCAGTGGATGAATTCGCTGAAATCTTC AAAACAAGTTACTGGGGACGAATGTTAAACGCTGAGCTCTCACAGCCATATAATAAATCTCAATCCCATGAGAAATCTTT ATCATTTAGCAAGTACTCCTTGGGAAAATGGGACTTGTTTAAAGCTTGTATGAAGAGGGAGCTTCTTCTCATGAACCGAA ACTCATTCATCTATATATTCAAAACTGTACAGGTTAGTAGCATCCTTCAAGTACAAGTGTTCAACTCAGCTAAGTTTAAA AACCTTAACACCTCAATCAACCACTTCTATCTCACTTGTTTCTTTTTCTCATTTGTAGCTTACAATCACTGCAATTATAA CAATGACCGTCTTCTTACGCACTCAGCTGACTGTGGACTTAATTGGAGCAAACTATTTATTAGGTTCACTGTACTATACT CTTGTCCGCCTCATGACTAATGGAGTTGCTGAGTTGATCATGACAATTACAAGACTTCCTGTTGTTTATAAGCAGAAGGC GTTCTATCTATATCCAGCTTGGGCTTACTGTCTTCCATCTTGCATTATAAAGATTCCTTTTTCAGTTCTTGATTCTATTG TTTGGACATCAGTAACATATTATGTTATAGGCTACAGCCCTGAAATAACAAGGCAAGTAGCTTATTTAATTTCATGCCCA GAATATTGCACTTTTCTATTTTAGTTTGCATGTTTTTCTTATTTTTTTATTTTGTGGGATCAGGTTCTTGCGCATGTTTA TTTTGCTTGTCACTCTGCACATGTCATCAACCTCTATGTGTCGTTTCCTCGCCTCAGTTTTCAAAACTGATGTTGCAGCT ACAACTGTCGGTTCCCTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCAAGACGTAAGCCATTCTATCT ACAGTTATAAGATGTAGTGTTATTAATCACAAAGATACTTATGGTGTTTATTCACTGCAGCATCGTTACCAAAGTGGTTG AGGTGGGCCTTCTGGCTTTCTCCCATGACATATGGGGAAATAGGAATAACACTAAATGAATTTCTCGCCCCTCGCTGGGA GAAGGTATCATCTAACTTCTATGTTTATTATTACTAAATAAAGTATATGTACTTATCTAAGTTATTACTTTTTCAGATCC AAAATGGTAACAATGTTACCATAGGAAGGGAGGTTCTTAAGAGTCATGGTTTAGATTTTGATGGCAACTTCTTCTGGATA TCAGTTGGAGCCCTACTTGGTTTCGCAGTAGTATTTGATATTGGATTTATCTTAGCATTAACTTACTTAAAAGGTAAATC CTGTCTAAGTTATTACAAGGAAACAAATGAACAATTATTTATTTTGCTCAATCCACTGATTTGATGGGAAATGCATTCAG AGCCTAAGCCATCTCGAGCTATAGTTTCAAAGAAGAAGCTCTCTCAGCTAAGGGGAGGAGACGAAAGCAATAATGTGGAC CTAAAAAATAAGTCGGTTACAGTTGATATTAGCAAAACATCAAAGCAAACTCAAAGTGCAGGTGAATAAAGCTGTTTTAA GATAAATTACCTCAAAGCTGAATTCTTTCTTTCAAACAAATACTAATAACTTTCGGTATGTTTTATGTGGTTGATCATGA AGGAAAAATGGTCTTGCCGTTTGAGCCACTGACAATAGCATTTAAGGATGTCCAGTATTTTGTTGAAACTCCTCCGGTAA TGAGCTTAACAGCAACATTGTCATGTATATTTAATCATGTATATTTTTTGTAAGTTTGTCAATAAATAAATTTAACTTTC TCCTTCTGAGCAGGAGATGAGAAAACATGGTTCCGATGAGAAAAGACTACAATTGCTCCGTGATGTCACAGGTGCCTTCA GGCCAGGAGTTCTTACTGCATTGATGGGAGTCAGTGGAGCAGGGAAAACAACTCTGATGGATGTCCTTTCAGGAAGAAAA ACTGGTGGTACCATTGAAGGAGATATAAGAATTGGAGGATATCCCAAAGTGCAGAAGACATTTGCAAGAGTTTCAGGTTA CTGTGAACAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCAGATTCTCTGCTTGGTTGCGTTTGCCAA TGGAGGTTGATTCAGCCACAAAAGGCGTATGATATGACATCCTTATCTCTTGTACCATGGCTTGTTTTTCTCAGATAATA GATGCATTTTGTAACTTTCTCTGTATATCTGTTGATCAGAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGA TATAAAAGATTCTTTAGTTGGCATCCCTGGCCTAAGTGGCTTATCTACCGAACAGCGCAAAAGGCTAACCATTGCAGTGG AGCTTGTTTCGAACCCATCAATAATATTCATGGATGAACCTACATCAGGTTTGGACGCCCGAGCAGCAGCGGTTGTTATA CGTGCAGTGAAAAATGTCGTTGGGACGGGCAGGACCACAGTTTGCACCATCCACCAACCAAGCATTGACATATTTGAGAC ATTTGATGAGGTAGTCAAAAGTGCATTCTAATGGTATAAGTCCCTATATTAGTGTGTAGAATAATATTACTCCACTTCAG ATAA
CDS sequence (LotjaGi4g1v0313000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGAGTCAATGTGAAGTTACCTACTGTGGAGGTCAAATACAAGAACCTAAATGTAGAAGCAGAATATGAGGTTGT TCAAGGGAAGCCACTCCCTACTCTATGGAACTCTTTTTCCAGCTTTTTGTCAGGTTTCATGAAAACTATATCATGCACTT CACAAGGAGCCAGTATAAGCATTCTGAATGATGTCAGTGGCATCATAAAGCCAGCAAGGCTTACTCTTCTTCTTGGTCCA CCCGGCTGTGGGAAAACAACCTTGTTATTGGCATTGGCTGGAAAGCTAGAGCAATCTCTCAAGGTTTCTGGAGAAATCTC TTACAATGGTCACAAGCTAGATGAATTTGTCCCTCAAAAAACATCAGCTTACATTAGCCAGTATGACCTGCACATTCCTG AGATGACAGTGAGAGAAACAATTGACTTTTCAGCACGCTGTCAAGGGGTTGGAAGCAGAGCTGATATATTGGCTGAACTC AACAGGAGAGAAGAAGAAGAAGGAGTCATCCCTGACCCAGATATTGATACCTATATGAAGGCAATTGCAGTTGAGGGACA AAGCGAAAATCTTCAAACGGAATATGTTTTAAAGATTCTTGGACTGGATATGTGTGCTGACATACTGATTGGTGATGCAC TAGAGAGAGGTGAGATGATTGTTGGTCCCATAAAAGCTCTTTTCATGGATGAAATATCAACTGGCTTAGATAGCTCCACA ACCTTTCAAATAGTTACATGTCTCCAGCAATTGGCACATCTCACAGATTCTACTGCAGTTCTTTCACTCCTTCAACCAGC ACCGGAAACCTTTGAGCTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATACCATGGTCCCTGCCATCAAG CAATTCAATTTTTTAGGGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGAGTGGCAGACTTCCTTCAAGAGGTCATTTCT AAGAAAGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACACTTATGTTTCAGTGGATGAATTCGCTGAAATCTT CAAAACAAGTTACTGGGGACGAATGTTAAACGCTGAGCTCTCACAGCCATATAATAAATCTCAATCCCATGAGAAATCTT TATCATTTAGCAAGTACTCCTTGGGAAAATGGGACTTGTTTAAAGCTTGTATGAAGAGGGAGCTTCTTCTCATGAACCGA AACTCATTCATCTATATATTCAAAACTGTACAGCTTACAATCACTGCAATTATAACAATGACCGTCTTCTTACGCACTCA GCTGACTGTGGACTTAATTGGAGCAAACTATTTATTAGGTTCACTGTACTATACTCTTGTCCGCCTCATGACTAATGGAG TTGCTGAGTTGATCATGACAATTACAAGACTTCCTGTTGTTTATAAGCAGAAGGCGTTCTATCTATATCCAGCTTGGGCT TACTGTCTTCCATCTTGCATTATAAAGATTCCTTTTTCAGTTCTTGATTCTATTGTTTGGACATCAGTAACATATTATGT TATAGGCTACAGCCCTGAAATAACAAGGTTCTTGCGCATGTTTATTTTGCTTGTCACTCTGCACATGTCATCAACCTCTA TGTGTCGTTTCCTCGCCTCAGTTTTCAAAACTGATGTTGCAGCTACAACTGTCGGTTCCCTGGTCTTAGTACTCATGTTC TTGTTTGGAGGCTTTATTCTTCCAAGACCATCGTTACCAAAGTGGTTGAGGTGGGCCTTCTGGCTTTCTCCCATGACATA TGGGGAAATAGGAATAACACTAAATGAATTTCTCGCCCCTCGCTGGGAGAAGATCCAAAATGGTAACAATGTTACCATAG GAAGGGAGGTTCTTAAGAGTCATGGTTTAGATTTTGATGGCAACTTCTTCTGGATATCAGTTGGAGCCCTACTTGGTTTC GCAGTAGTATTTGATATTGGATTTATCTTAGCATTAACTTACTTAAAAGAGCCTAAGCCATCTCGAGCTATAGTTTCAAA GAAGAAGCTCTCTCAGCTAAGGGGAGGAGACGAAAGCAATAATGTGGACCTAAAAAATAAGTCGGTTACAGTTGATATTA GCAAAACATCAAAGCAAACTCAAAGTGCAGGAAAAATGGTCTTGCCGTTTGAGCCACTGACAATAGCATTTAAGGATGTC CAGTATTTTGTTGAAACTCCTCCGGAGATGAGAAAACATGGTTCCGATGAGAAAAGACTACAATTGCTCCGTGATGTCAC AGGTGCCTTCAGGCCAGGAGTTCTTACTGCATTGATGGGAGTCAGTGGAGCAGGGAAAACAACTCTGATGGATGTCCTTT CAGGAAGAAAAACTGGTGGTACCATTGAAGGAGATATAAGAATTGGAGGATATCCCAAAGTGCAGAAGACATTTGCAAGA GTTTCAGGTTACTGTGAACAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCAGATTCTCTGCTTGGTT GCGTTTGCCAATGGAGGTTGATTCAGCCACAAAAGGCAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGATA TAAAAGATTCTTTAGTTGGCATCCCTGGCCTAAGTGGCTTATCTACCGAACAGCGCAAAAGGCTAACCATTGCAGTGGAG CTTGTTTCGAACCCATCAATAATATTCATGGATGAACCTACATCAGGTTTGGACGCCCGAGCAGCAGCGGTTGTTATACG TGCAGTGAAAAATGTCGTTGGGACGGGCAGGACCACAGTTTGCACCATCCACCAACCAAGCATTGACATATTTGAGACAT TTGATGAGGTAGTCAAAAGTGCATTCTAA
Protein sequence (LotjaGi4g1v0313000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRVNVKLPTVEVKYKNLNVEAEYEVVQGKPLPTLWNSFSSFLSGFMKTISCTSQGASISILNDVSGIIKPARLTLLLGP PGCGKTTLLLALAGKLEQSLKVSGEISYNGHKLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADILAEL NRREEEEGVIPDPDIDTYMKAIAVEGQSENLQTEYVLKILGLDMCADILIGDALERGEMIVGPIKALFMDEISTGLDSST TFQIVTCLQQLAHLTDSTAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCHQAIQFFRDCGFWCPERKGVADFLQEVIS KKDQRQYWYRTDIPYTYVSVDEFAEIFKTSYWGRMLNAELSQPYNKSQSHEKSLSFSKYSLGKWDLFKACMKRELLLMNR NSFIYIFKTVQLTITAIITMTVFLRTQLTVDLIGANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWA YCLPSCIIKIPFSVLDSIVWTSVTYYVIGYSPEITRFLRMFILLVTLHMSSTSMCRFLASVFKTDVAATTVGSLVLVLMF LFGGFILPRPSLPKWLRWAFWLSPMTYGEIGITLNEFLAPRWEKIQNGNNVTIGREVLKSHGLDFDGNFFWISVGALLGF AVVFDIGFILALTYLKEPKPSRAIVSKKKLSQLRGGDESNNVDLKNKSVTVDISKTSKQTQSAGKMVLPFEPLTIAFKDV QYFVETPPEMRKHGSDEKRLQLLRDVTGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGTIEGDIRIGGYPKVQKTFAR VSGYCEQNDIHSPYITVEESVRFSAWLRLPMEVDSATKGKFVEEVLETIELDDIKDSLVGIPGLSGLSTEQRKRLTIAVE LVSNPSIIFMDEPTSGLDARAAAVVIRAVKNVVGTGRTTVCTIHQPSIDIFETFDEVVKSAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 401 | 401 | - | – | |
| ProSiteProfiles | 47 | 307 | 261 | 10.018 | ||
| SUPERFAMILY | 59 | 307 | 249 | 3.77E-25 | ||
| Pfam | 62 | 161 | 100 | 7.0E-11 | ||
| SMART | 71 | 284 | 214 | 1.3E-7 | ||
| PANTHER | 99 | 938 | 840 | 0.0 | – | |
| PANTHER | 99 | 938 | 840 | 0.0 | – | |
| Pfam | 386 | 597 | 212 | 2.3E-39 | ||
| Phobius | 402 | 423 | 22 | - | – | |
| TMHMM | 402 | 424 | 23 | - | – | |
| Phobius | 424 | 442 | 19 | - | – | |
| Phobius | 443 | 466 | 24 | - | – | |
| TMHMM | 444 | 466 | 23 | - | – | |
| Phobius | 467 | 477 | 11 | - | – | |
| TMHMM | 473 | 495 | 23 | - | – | |
| Phobius | 478 | 500 | 23 | - | – | |
| Phobius | 501 | 519 | 19 | - | – | |
| TMHMM | 517 | 539 | 23 | - | – | |
| Phobius | 520 | 539 | 20 | - | – | |
| Phobius | 540 | 545 | 6 | - | – | |
| TMHMM | 546 | 568 | 23 | - | – | |
| Phobius | 546 | 567 | 22 | - | – | |
| Phobius | 568 | 628 | 61 | - | – | |
| Pfam | 602 | 665 | 64 | 3.0E-22 | ||
| Phobius | 629 | 655 | 27 | - | – | |
| TMHMM | 630 | 652 | 23 | - | – | |
| Phobius | 656 | 942 | 287 | - | – | |
| ProSiteProfiles | 715 | 940 | 226 | 10.158 | ||
| Gene3D | 730 | 940 | 211 | 6.1E-44 | – | |
| SUPERFAMILY | 740 | 928 | 189 | 8.45E-34 | ||
| Pfam | 743 | 895 | 153 | 1.2E-19 | ||
| SMART | 752 | 942 | 191 | 1.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi4g1v0313000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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