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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336900 |
| Transcript ID | LotjaGi4g1v0336900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT3G16857.2 response regulator 1; Swiss-Prot: sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1; TrEMBL-Plants: tr|I1KMU8|I1KMU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71704878..71710446) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCTTTGAGGTTGAGGCTCAGAATTATTTAATTTAAAGAAAAAAATTCAGACTCAAAATTCCATTTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTGTTTCTCTCTCCTCTCTCTCTTTCTTCTCCGATTCCTGCGTTCTCTGTGTTGCGTATG GTTGAATTGCGAACTCACTTGGAGAAGCAGCTTCTTCTTCCTATGTTATCCTCTGTTCGCTCTCACCTCAATTCCGAACT AGCTATGTGAACTCAATCAAGCAAACTCGATTCCGTTCTGTAATCGCGTTTTGTTGTCTCTGATTGATTGCTGTTGTTGT TACTGTTTGGATCTCTGAAGCATGAATCATAGCTGTAACGGAAAGGGATCCATGATGTCAACGGTGGTTATGAAATCCTC CGGCGAAGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTGGTGGTGGATGATGATCCCACGTGCCTCATGATCC TTGAGAAGATGCTACGCACATGTCTCTATGAAGGTACTAGTTACTGCTCAATCAATCACTCTCTCTCTCTCTCTCTCTCT CCTCAACTGCACTTTCTTTCACCTCTTTCTCTCTCTTCAATTTCGCTTCTCCGATTTGGTCGCTTAGTTAGTTGAAAAAT CCATGGAAGGAACACACAGAAATCGCAAGTTTATCACCACATGTTATGTAGTTTTATCTCAAAATTTGTTTTGGGCCAAA GGGTATTCTCAGTTTCTCACTCTGACTACTTCAATTCAAGTTTATTCTAGTCTTCTACTTCCTTTGAAACTGGTTTTGAA TTGTTGGATGCTAGATTTGTGTTTATTTTGTTCATTGAGTTGTTATTATTTTGTTGATAATGAAGTTTGAGGAATGTTTT TGTTGATTCCATTTCAGTTACCAAATGCAATCGAGCAGAGAAAGCACTCACACTGCTCAGAGAGAGGAAGAATGGGTTTG ACATTGTTATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTAGAGCACATTGGATTGGAGATGGATCTT CCTGTTATTAGTAAGCAACTCATTTGATTACCTTAGATCAGTGTTGTCAAATAGCGGATATCGCGGCTCTGAGGGCTCAC TGCTATCTGCTGCTATTTGCCGCTATTTTCCGCCTTGAGGGCATAACATAGCGGATTTTTGGCTTTCCGCTATTTTCCGT GATCCTTGATTGACAACAATGCCTCAGATCCACTTCTGGGCTGTATTGATTTTTGTGACTGACATGTTAATTTGTTTGAT GATTGCAGTGATGTCAGCAGACGATGGTAAAAATGTTGTTTTGAAGGGTGTGACACATGGTGCTTGTGATTACCTGATTA AGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGGAAGAGAAAGAATGAGTGGAAAGATACGGAG CAATCGGGCAGTGCTGAAGAGGGGGGAGACAGGCAGCCAAGGCCATCTGATGATGCGGATTACTCGTCCTCGGCAAACGA AGGCAGCTGGAGAAACTCGAAGAAGAGAAGGGACGATGAGGAGGAAGGAGACGAGCGGGATGACTCGTCCACATTGAAGA AGCCGCGAGTTGTTTGGTCTGTGGAGCTGCATCAACAATTTGTGGCTGCTGTGGATCAACTGGGAATAGATAGTATGTAT CTTCTTCACCTGCATCCTTGAAAACAAATTTTCTTTTTTATCTCTTGTTTCTTTTCCATGCAGACCTGTCTAACACAACT TAGCAATGCCCCACAATACTTTTGCTCCATCAACAAATTTGATTTTTTCTTTTGTTCAGATGTCACTTTTATCTGAGTTC TGAAAGCCACCCTTCTACTACTTACATCGTCTGTATTTAGTTACCATATTCAGGATCATTGCATCTAGCTTATGTAGACT TTCAACTCGTGTGGATCAGTTTTCAAACTATTCTATTCAGGGTTTTTTTTAATTTGCGGTCGCGGTTGGAGTTGCCGCTG AGTCGCGAAATTGCGGACAAATACGGGGTGAAGTGGCCGCAAATTGCGGTTGTGATGCTGATGCGGGGACTCCAAAACCC GTTACGCTGTGGCCACAATTGCGATTGCGGACTGCAATTTCGACTGTGGACCGCAACTAATTTTATTGGATAATTAAGAT CCCAATGTGACTTAAAAGTACAACAATCAAGTCCACAGGGTTGGCTCCTAGCCATTTGGCTCTTTCAAAAACCAAAATAT TCTGTAGAATAGTTGTTCCTACAGTTTTCTTAGTTCTCCATCTATCCTTTTAAATTGATTTTTAATCCCAGTTTTTTAGT AGAGCCTCTATTAGTTTTATGATATAAGATCAAACCATCCTAGGTGAGTCTTCTTGAGTTGTGTTAGTTGGAGATTTGTT TAAAGTATATAAACTCCTCTAATGTCTTGCAATTTTATTTTTGCGCAGAGGCTGTTCCTAAGAAGATTTTGGAATTGATG AACGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGGTATTCATACTGCTACTTTTATCCCATGTGTACTC TAGGAGGCACTCAAAAAGTTAAATCCCTACTTCTTGTTGTGGTCATCTATGTTTCTTTGAATATATGCTAATGACGCTAC AATTCGTTTTTCTGTTTTTGTTACAGAAATACCGATTGTATCTTCGGAGACTGAGTGGAGTTTCTCAGCACCCAAATAAC TTGAACAACTCATTTCTTGGCACACAAGACGCTTCATTTGGCACAATTTCATCAATTAATGGGATTGATCTTCAAACCCT TGCAGTTGCTGGCCAACTGCCAGCACAAAGTCTAGCCACTCTTCAAGCAGCAGGACTAGGCAGGTCAAATACAAAAGCAG GTGTGCACATGCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAATCCAAGGTTAAGATTTGGAGAAGGGCAACAG CACCATTTAAGCAATAGTAAACCAATGAACCTACTTCATGGAATCCCTACCAACATGGAGCCGAAGCAGCTCGCTAATTT GCACCAGCCTACTCAATCCCTTGGCAACTTGAACATGCGAGTCAATGGTCCCGCTTCACAGAACAACCCCTTATTGATGC AGATGACACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAACAACGCTCCTCGTGTTTCCAGACTACCGAATCCCTTG GGGCAGCCTAATGTATCAAATGGAATCTCTGATGGTCTTCTAGGCAGAAACGGGATTGCTGGGAGTAACAGACCACCTGC TTATAATCCTGTTCCACAGAACTCTTCATTGTTTAATTTTCCCATGAATCAAACTACTGATATGTCTATCAATAGTTTCC CTCTTGGAAGCACTCCAGGTATATCCAGTGTCACAAGCAAAGGCTCATTTCAAGACGAAGTTACGTCGGGAATTAAAGGA TCTGTTGGGTTTCCAAGTTATGACATTTTTAATGAACTGCACCATCAGAAGACCCAGGATTGGGAGGTAACAAATACGGG CTTAACGTACGATTCCTCTCGGCATGCAAATCCTTTACAAGGCGGTAACTTTGATGTTCCGCCATCAGTTTTAGTCCATC AGGGCTTTTCCTCCAACCAACAGAGTGGACAAAGCAGAGATCACAGTTTGAATGGAAAAGCTATTTTCTCCATGGGAGAA GGCCTGGAAAGAGGTAATTTCCAAAATGCTGGTCAACACCTCAATAACCTTCTTGTTGACAATTCAATTAGGGTTAAGAC TGAGAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTT TTAAACAGGTTGGTCCTTTATACCTTCCTTTAGACCTGAAATATTTATAATGTTGCATTTAGGGCTTGTTTGATTAACTT CTCAATTTTTTGAATGTAAAAACTATTTTCAGAAACAATATTTTAATTCTGTTTTCAAAAGAAGAAAAGAAAAAAAAAAC TGTTTAAGCGATATATGTTTTTCAAAGCTGAAAGATAGACGTAAAAACTAAAAACGAAAACATTTGGAATTTCAGTTTTA AAAACTTAAAATAGAAACTGTTTTTAAGGACAGTTTTCATACCAAACAAGTTTTTTTTTTCTTTTTCTGTTTTAAAAATC TGAAAACTGTTTTACAATACATTATTAAAAAATGCCCTTAATTTTCCATTTTAAACAAATCTTGTGTGTTTCTTGCAGCA GGAAGGCATTGGACCATCTGAGAATGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTGTAGATTAGACCCT GGCCAGTTCATTCTGTTTGTGTTGCCATTGTAAATAGTTGCTCTTACATATGCACCTTATCATTCTGCTATTATCTATTT TGGAACTGGGTCTTAATCGTTCCACAAACAGAATTTGGTTGATGCATATTCAGATTTCTGGGAGTAGCTTACTGTGAAGG TTTAATCTGAACAATCATGATCTTTTAAGTAGTTGATCAAGAAGAATCAGCCGCAAACCTCAACTGCATGTATGCACAAA GCATGTGCAATTTTTGACATCTTGGTAGCGAAGTTCCTAGCAAGCTTCTAATTTTAGGGTGTTTCATGAAGGTATGTTGG CTTAGAGAAGAATTGCAGAAGCAAGGTTTTGATACATCTGCAGACTTGTAGGAGCATTTCTAACTTCAATAACAAAAAAT TATGATTTAATTCTTTTTGTCTAGTTCCTTTTGCAATTTATGTTTTTGAAAGTGAATGACATCGGTAAGCATGTAAATAT TTCAATTTGGTTGCTGCTCACATTTGGTCTGGATATTCTTTTCTGGTAATGTCTGTGACTCGAAACTTTTGTGCTTTCAT GTTTCAGCAGTAGCTGAGATATGCTCTGTTCATTACTATGCTATGCATTCTTTGTAAATGAACTTGATTAGTTACTCATG TGGGATTTTTATGTCTACTACTGTGTAAGATAGTGATTGTGAAGCTATGTGGTGTGCTTGGTTAACTTGTTTTCCATTCA CATCATGTGACCTTTGTAAAGCTGCTTATGATAATGTTTAGCCTTTTGAGACATGCAAGGACATAACATCTACCTAGGCA TCTTAACAAGTATGATGCTTTTCTCAACGGTAATTGCGGCTATGTGGTGGGGAGAAAATCACGTGAGCCAGGATGGGTGG GGGAGTGTTGGCTATAATGTAGATTGCTCTTAGTCTTTGAACTTTTACTAAGGCGTTTTTTAGTCATATTTTAGTCTTTG AAAAAAGGGCAATCTTAGTTTTTGTAATATATTTGACAAACTGGTAAATATAAATACGATTAGGGGATTAAATAGTGTAA ATTATTTGTTGCATGTTTGATTTTAAAAATGAATATTGGAAAAAAATACAAGGTAAAAGCATATGATAAAAAAACGAAAA AATGAATGAATTTTTTTTTTTGTTATTAACTTAACATGGAGATGAAGATCACTCTTTTGCCACATACAACTCCATTATTA CTATCTCATTCAACATAATCCTCTTCCTCAAATTGTCCCTTGCACAAAC
CDS sequence (LotjaGi4g1v0336900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCATAGCTGTAACGGAAAGGGATCCATGATGTCAACGGTGGTTATGAAATCCTCCGGCGAAGCCGTCTCCGACCA GTTTCCGGCGGGTCTCCGGGTTCTGGTGGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGCTACGCACAT GTCTCTATGAAGTTACCAAATGCAATCGAGCAGAGAAAGCACTCACACTGCTCAGAGAGAGGAAGAATGGGTTTGACATT GTTATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTAGAGCACATTGGATTGGAGATGGATCTTCCTGT TATTATGATGTCAGCAGACGATGGTAAAAATGTTGTTTTGAAGGGTGTGACACATGGTGCTTGTGATTACCTGATTAAGC CTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGGAAGAGAAAGAATGAGTGGAAAGATACGGAGCAA TCGGGCAGTGCTGAAGAGGGGGGAGACAGGCAGCCAAGGCCATCTGATGATGCGGATTACTCGTCCTCGGCAAACGAAGG CAGCTGGAGAAACTCGAAGAAGAGAAGGGACGATGAGGAGGAAGGAGACGAGCGGGATGACTCGTCCACATTGAAGAAGC CGCGAGTTGTTTGGTCTGTGGAGCTGCATCAACAATTTGTGGCTGCTGTGGATCAACTGGGAATAGATAAGGCTGTTCCT AAGAAGATTTTGGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTA TCTTCGGAGACTGAGTGGAGTTTCTCAGCACCCAAATAACTTGAACAACTCATTTCTTGGCACACAAGACGCTTCATTTG GCACAATTTCATCAATTAATGGGATTGATCTTCAAACCCTTGCAGTTGCTGGCCAACTGCCAGCACAAAGTCTAGCCACT CTTCAAGCAGCAGGACTAGGCAGGTCAAATACAAAAGCAGGTGTGCACATGCCTCTCATGGATCAAAGAAATCTTTTCAG TTTTGAAAATCCAAGGTTAAGATTTGGAGAAGGGCAACAGCACCATTTAAGCAATAGTAAACCAATGAACCTACTTCATG GAATCCCTACCAACATGGAGCCGAAGCAGCTCGCTAATTTGCACCAGCCTACTCAATCCCTTGGCAACTTGAACATGCGA GTCAATGGTCCCGCTTCACAGAACAACCCCTTATTGATGCAGATGACACAATCCCAACCTAGAGGTCAGATGCTAAGTGA AAACAACGCTCCTCGTGTTTCCAGACTACCGAATCCCTTGGGGCAGCCTAATGTATCAAATGGAATCTCTGATGGTCTTC TAGGCAGAAACGGGATTGCTGGGAGTAACAGACCACCTGCTTATAATCCTGTTCCACAGAACTCTTCATTGTTTAATTTT CCCATGAATCAAACTACTGATATGTCTATCAATAGTTTCCCTCTTGGAAGCACTCCAGGTATATCCAGTGTCACAAGCAA AGGCTCATTTCAAGACGAAGTTACGTCGGGAATTAAAGGATCTGTTGGGTTTCCAAGTTATGACATTTTTAATGAACTGC ACCATCAGAAGACCCAGGATTGGGAGGTAACAAATACGGGCTTAACGTACGATTCCTCTCGGCATGCAAATCCTTTACAA GGCGGTAACTTTGATGTTCCGCCATCAGTTTTAGTCCATCAGGGCTTTTCCTCCAACCAACAGAGTGGACAAAGCAGAGA TCACAGTTTGAATGGAAAAGCTATTTTCTCCATGGGAGAAGGCCTGGAAAGAGGTAATTTCCAAAATGCTGGTCAACACC TCAATAACCTTCTTGTTGACAATTCAATTAGGGTTAAGACTGAGAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTC CCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTTTTAAACAGCAGGAAGGCATTGGACCATCTGAGAATGAGTT TGACTTTGATGGATATTCTCTGGACAACATTCCTGTGTAG
Protein sequence (LotjaGi4g1v0336900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHSCNGKGSMMSTVVMKSSGEAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEKALTLLRERKNGFDI VISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVLKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDTEQ SGSAEEGGDRQPRPSDDADYSSSANEGSWRNSKKRRDDEEEGDERDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVP KKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHPNNLNNSFLGTQDASFGTISSINGIDLQTLAVAGQLPAQSLAT LQAAGLGRSNTKAGVHMPLMDQRNLFSFENPRLRFGEGQQHHLSNSKPMNLLHGIPTNMEPKQLANLHQPTQSLGNLNMR VNGPASQNNPLLMQMTQSQPRGQMLSENNAPRVSRLPNPLGQPNVSNGISDGLLGRNGIAGSNRPPAYNPVPQNSSLFNF PMNQTTDMSINSFPLGSTPGISSVTSKGSFQDEVTSGIKGSVGFPSYDIFNELHHQKTQDWEVTNTGLTYDSSRHANPLQ GGNFDVPPSVLVHQGFSSNQQSGQSRDHSLNGKAIFSMGEGLERGNFQNAGQHLNNLLVDNSIRVKTERIPDASSQTNLF PEHYGQEDLMSALFKQQEGIGPSENEFDFDGYSLDNIPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 659 | 648 | 0.0 | – | |
| PANTHER | 12 | 659 | 648 | 0.0 | – | |
| PIRSF | 14 | 671 | 658 | 1.5E-183 | ||
| Gene3D | 23 | 165 | 143 | 8.2E-35 | – | |
| SUPERFAMILY | 31 | 155 | 125 | 2.7E-35 | ||
| SMART | 32 | 144 | 113 | 7.3E-30 | ||
| ProSiteProfiles | 33 | 148 | 116 | 42.124 | ||
| Pfam | 34 | 142 | 109 | 5.5E-23 | ||
| CDD | 35 | 147 | 113 | 5.61859E-28 | ||
| MobiDBLite | 154 | 176 | 23 | - | – | |
| MobiDBLite | 154 | 210 | 57 | - | – | |
| MobiDBLite | 189 | 210 | 22 | - | – | |
| SUPERFAMILY | 210 | 270 | 61 | 6.63E-20 | ||
| Gene3D | 210 | 272 | 63 | 1.6E-32 | – | |
| ProSiteProfiles | 210 | 269 | 60 | 11.518 | ||
| TIGRFAM | 213 | 266 | 54 | 7.3E-25 | ||
| Pfam | 215 | 265 | 51 | 2.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0336900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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