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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0342200 |
| Transcript ID | LotjaGi4g1v0342200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0342200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72186765..72189639) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGGGGGACGATGGTGTTAGCTGAGTACACAGAGTTCACTGGAAA CTTCCCTGCGATTGCATCTCAGTGTCTCCAGAAGCTAACTTCCTCCAACAACAAGTTCACCTACAATTGTGACCACCACA CCTTCAATTTCCTTGTTGAAGATGGTTATGGTATTGCTTCTCTGCTCCGATCTCTATATCTTTCTATCTTTTCTGCATTC TTAGTACTACTTAGGCCTTCCCCTGAACCTGAACTAGATGGAAGCTGAATTCATAGTATAAATACTGGATCTAAGCATTG ACAACTAATTGGCTCAAAGATTGCATTTTTTGAGGTTGTGTTTCCCATTTCAATTGATTTTATATGGTGGGTTGTCCTTG CTTTTATGGGTTGCTTCTCCAATTTTGTTAATTTTTCATTTCAATGCTTAAATAAAACAAACTAATGCAGAGAAATGGAA TTTGGGTTCTCCAGGTCCAAATAAAGTTTATTGATGAATGAGAAACCATGTTTACTCTGGGACATGTCTGTAGACCCTAC CATTCATAGGTTGTCATACTTAGGGAGAAGCATTTGCTTCTGGTGGCATTGAATTTTGTCTTCTATTATATCACACATAA TTTCAATGTAACCCTGATCCCTCAACAATCAGTAATCAGGGATCATAGTGGGACACCCAACAATTTTGTGTGTTTTGTAT ATCGGTTGAGTACAATGTGGACAGACGAAACTTTCGTCTCAATGCACAAGAGTTTTAATCAATTTGTCTTGAAGTGGATG TTAAAGTCTGTTTGCATTGTTGCTAACGGATATACAAACATAGTCTCTGTTTATTAATTGATATTCATGCACAAATAGTC TTCAATCAATGCCTTATACTTTATTTTGTGCATGTGAAGTTGTGAATGCTGCTTTGGTTGGACTTAGGCTGCCAAAGAAA CCCATGTTCAATTGTATCTATGCATGACCCTGACAGAATAAGCCAGAACTATCCCTTCCTGTTGAGTAGTCTCATATTGA CTAGATATATGACCGAGTAAGTGTTTATATAGGGTTAACTGTTAAGCAATCCTCACCCCTAAAAAATGGTCCCGCATTCT CCCCATGTCCAGCTTGCAGCGTGAGGATGTGTGTTGAGAAGTCCCGCATTGAAGCTAACATGACAACCTCTTGATATATA TGTTTGACTTCCCTTGGTTTCCAAACTTAACTGTCTACTTCCAACATTTACTTAAACATTGAGTTGCATTCTGATGAGGA TCTCATCATTTTAATGCTTTAAATCTTTGCTTACTGTAAATTGCAGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAA GCAGATCTCTATTGCTTTCTTGGAACGTGTCAAAGCAGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTG TTGCCAAAAGTCTCAACAAGGAGTTTGGGTATATACTAATTTCTTTCCAAGCCCTTCATGATGCTTACTGATTATATAAT GCACGGATAGAAAAACTTGTAGCAAAAGGGTTAATAATTTCATTAATATGGGATCACATTTGCAGACCAGTTATGAAAGA GCACATGAAGTATATCATCGACCATGCCGAAGAGATTGAGAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAA GCATTATGCTAGAGAACATTGACAAGGTATGGTATTGGTTTGGAGTGAGACATGGAATTATTTTTCTGACAAACAACCCT TTCTTGGTGCAGTTGTCTTATGCGCCTAGGTCTAACCTATAAATACAATCCATTATTGATTATATGCCCTTCTTATTAAA ATAGAGGATTGGGGGAGGGTGAAATATGGTTTTGGTAGGATTTTTATGCGTTAGTCATCTGACTACTTTATTGCAACTTT TGAGGAGTCGTCAGGAAAAAATTAGTGCACTTTCTGTCTGCTCGTTCATACTTCTATCAGAAAATTCCCAAAGTTGAAAT TTTAGAACACAACGTTAATACTTGTATAAGCAATATGCAGTGCGTGTTTGGATCAGCGTTGTGTGATTTTGGATATAATT GATTTTGGTAAAAGTAAGTTGAAAGTGTAGTGATTTATGTTTGCATAAAAGTGATTTTTTCTATAGAGTAATGTTTTGAA ATCCAGAAATCTCACACTTGATTGTGTCCACTGCAGAAGGTACTCTTTAGCTTTTCTTAGAATTGATTTGGAACCAAAAT CAATTCTCTATGTTGATTGCCCAACATCCATATAACCACCTAAAGTTTTTATGGCTAATGAGAGTTGATTCTACAGCTCC AAAATTTGGAACCAAACAGATGCATTCTATACTTTCCCTCCCTACACTATTGTTGGCAATAACTTGCATTCACATTTTGA CAATACTCAATTTTTTCTTTGACCTTTGAAATTTTTTGTGACTAAATTATGACCTTGTTATGTTCTGTCATTGTAAACAT TTTCCATTACATTATCCTGTCTGTATTTGTTACTGTCACTCTGCTGAGTTTCCTCAGTGTGACACTTAACCATCTTTGTT TTCACTATGTTTGTGCTTTCAGGCTATTGATAGAGGAGAAAATATAACTATTCTTGCAGACAAGACAGAGACATTGCACT CTCAGGTAAATTGACTAAGGTTTGACAATTATTTGTATTTTGTAATCTTATGTTTTCTAGGACTGAAGGATCTCTAAATT TTCAGGCCCAGGAGTTCAGAAATAAAGGAACAAAAATCCGTCGGAAGATGTGGTATCAGAACATGAAAATAAAATTAGTT GTTCTTGGAATTTTGTTGTTTTTAGTCCTGGTTATATGGCTTTCTGTTTGCCATGGATTCAAATGCTAAAACTAG
CDS sequence (LotjaGi4g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGGGGGACGATGGTGTTAGCTGAGTACACAGAGTTCACTGGAAA CTTCCCTGCGATTGCATCTCAGTGTCTCCAGAAGCTAACTTCCTCCAACAACAAGTTCACCTACAATTGTGACCACCACA CCTTCAATTTCCTTGTTGAAGATGGTTATGGCTGCCAAAGAAACCCATGTTCAATTGTATCTATGCATGACCCTGACAGA ATAACTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCTATTGCTTTCTTGGAACGTGTCAAAGCAGACTT TAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTCAACAAGGAGTTTGGACCAGTTATGAAAG AGCACATGAAGTATATCATCGACCATGCCGAAGAGATTGAGAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAA AGCATTATGCTAGAGAACATTGACAAGGCTATTGATAGAGGAGAAAATATAACTATTCTTGCAGACAAGACAGAGACATT GCACTCTCAGGCCCAGGAGTTCAGAAATAAAGGAACAAAAATCCGTCGGAAGATGTGGTATCAGAACATGAAAATAAAAT TAGTTGTTCTTGGAATTTTGTTGTTTTTAGTCCTGGTTATATGGCTTTCTGTTTGCCATGGATTCAAATGCTAA
Protein sequence (LotjaGi4g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQESFIYSFVARGTMVLAEYTEFTGNFPAIASQCLQKLTSSNNKFTYNCDHHTFNFLVEDGYGCQRNPCSIVSMHDPDR ITYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVK SIMLENIDKAIDRGENITILADKTETLHSQAQEFRNKGTKIRRKMWYQNMKIKLVVLGILLFLVLVIWLSVCHGFKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 145 | 145 | 6.6E-40 | – | |
| Phobius | 1 | 211 | 211 | - | – | |
| PANTHER | 1 | 237 | 237 | 6.6E-128 | – | |
| PANTHER | 1 | 237 | 237 | 6.6E-128 | – | |
| SUPERFAMILY | 6 | 139 | 134 | 5.49E-24 | ||
| CDD | 7 | 138 | 132 | 4.10456E-25 | – | |
| ProSiteProfiles | 10 | 132 | 123 | 23.054 | ||
| SMART | 31 | 131 | 101 | 5.4E-20 | ||
| Pfam | 32 | 129 | 98 | 9.0E-18 | ||
| SUPERFAMILY | 144 | 210 | 67 | 1.83E-20 | – | |
| Gene3D | 146 | 232 | 87 | 3.4E-26 | – | |
| Pfam | 147 | 233 | 87 | 7.1E-29 | ||
| CDD | 147 | 206 | 60 | 1.31863E-22 | – | |
| ProSiteProfiles | 148 | 208 | 61 | 17.374 | ||
| PRINTS | 153 | 172 | 20 | 7.9E-16 | ||
| ProSitePatterns | 166 | 185 | 20 | - | ||
| PRINTS | 173 | 192 | 20 | 7.9E-16 | ||
| PRINTS | 209 | 228 | 20 | 7.9E-16 | ||
| Phobius | 212 | 231 | 20 | - | – | |
| TMHMM | 212 | 231 | 20 | - | – | |
| Phobius | 232 | 237 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0342200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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