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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344100 |
| Transcript ID | LotjaGi4g1v0344100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72395807..72402669) extracted from Lotus japonicus Gifu genome v1.2.
AATTTTTGCTTAGGTGCAATCGCAGAGAAAGAAACTGAGAAGCCATCAATGGTGGTTTAGACTTTAGAGAGAGATGCAGA CGTCACTGTTTCGACGCCTGGCTCCGTCGTTGGAATCGAACATGTTCGTATTCGTTCTTGCCTCTCTCGTCATCTGCCAG GTTTTACTTCTTTCTCTTTCGCACTCCTTCTAATTATTCATGTCAATGATTTTAGGGGAATAGGGTATAATTTGATTCTG CAATTTTCGTTCACTTTTAGTGCCTAAATTGGTAACAGTACTTCAGATTTGCACTGAACTTTTGCAAAGGAAGAAAAACT AAAAGCTACATTTGGGTGGTTATGGTGGGGTTTGGGGAGGAGAAGATGGTGAATTTTTTGTTAAGAAGATGAATTTATTT TTTTGGGTGTAATACAGGTAATCATCCACCGGAGGCAATCATGTTCAAGCTGGGAACATCCACATCTTGATGGGGCTAAC TCCATCGGCGGGTATTTTTACATCCACAAGACTCGAACCGAGACATTTTGCTTAAGAGGAATCAAGCATGTACTACTTGA ACCAAACACCAGAAGATGAATTTCTAGGTAAGAAAGATGAATTTCTGAAATTAGGAATAGGAATTAATGTTGTGGAGAAT AGATGAATTTCTGGGTAAGATGATGAACTTTTGGTAAGATGATGAATTTCTGAAATTACGAATTAGTGATTTTTTTTTGT GTGGAGGAGAAAATATAATTTTATAAGTTAGATGAGTTTTTGGTCCCTCTTAATTTTTTTTTTGGTTTTAGTCCTCAACT GATACATCACCATCATGTTAGCATGCCACATAACTTTTGCCAGGACATGTAAGCAAGTCTCCATAGCTCATTCTTAGACG AGGGCTAAAACCAAGGTGTATGTAGGGGTGTTTTTGCAACTTTACTCCGTCTATGTCTTAACATAAATATGACTCATTTT ACACAGACTAAAAACATAATTAACCCAAAAAAAAACACTTATAGAATAATGGATGAGATGAATGAACTTTGTGGTTACCT CCTTAGGCAGCCCCCCTATTTCCATCGCTCGAGTATTGAAACTCGACATTTATTTTGATTCAATTCTCCTAGAGTCGTAC GGTCTAGATGATGGTTCATCTATTATACTTTGTGTGTCTCTAATTATAAGACCCTTAAAACATAATCAACCCAAAAAAAT ATTTATAGAATAATGGATGACCAGATGAATGAACTTTGTGGTTACCTCCTATGGCAGCCCCCTCATTTCCATCACTCGGG TATTGAAACTCGACATTAATTTTGATTCAATTCTCCTAGAGTCGTATGGTCTTTATGATGGTTCATCTATTATACTTTGT CTTTCACTAATTATAAGACCCTTTTTTTGGTTACAGGAGGAAATTAATTAGAAGACCCTTTAAAGACATTTTTGGTGTCC CTTAATATAAAACCCTTACTAAATTTCGGAAAAAGATTATTATCCTTTTCCCTATTATACATTTGTTATTCCAAAATTTT GATTACCACTAGTAATTAATTCTTTTCCATGTTACCTAATACATTAATTTCTGGTAAATATAGAAGATTGTATGAACTTT TTAAAACCAATACATTAATTAGGCTCATTACATCTTTTCTTAATAAGCATAATTGTCTAAAGTAATCAGTGACAAACACT ATTTTTTTGGGTTTGTCATTCCATTGATGGGTGGATTCCATTTTTAAAACGGATTAAATGGATAACTTGAAATTTATCCT TGAAGCCCATGTAATTATTTGATCCATGATGGGTTTGGAAATCACAATGTCTATATTTATATTTATTAGACTTACGCTCA ATTGTTAAGTGTTTTGGGCCAAATAAGTTACTTAAGGCCCACGATCAACCAAAACTAGGGTTCCATTACATCATATATAT ATGGCCAGAACTCCTCTCCTCTCTTGAACCTGGTTGCGCCGAGCTCAGTTATTCAGTTATAGAGAGGTAAACAATTCTGA CTCTCACTGTGGCTTCAAGAGTAGTGCAATTTATATTAATCTAGTCAGTGTTCTGAATCTTGTTATAGATCTAGTCAATT TTATTTCATCATGATCAACATATAATTGAGATCATGGCTGGGTAACTCGTTTCGATCGGGTTAGGTGACTAGAAAAAAAG TGAAGGATGGTGTAGAAATTGATACCAGTTAGGACCATACACACACATATATGTATGCAAATGGTGTTGAATTTTCAAAT CAAACCTGGCTATAACATTTATTTTTATGGGGAGGAAATTGACCAGAACTTATGCCATTCATATGTTGAAGTTTGGAAAC AAAGCCGCTCTCTCTTTTCTTCTGCCACTATGATTGATCTAATTTTGCGCCTGTTACTATTGCTTTAATTCAACATATTT GCTGCTGATTCAGTGAAACATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAG CTGTGGACAGCCTCATTAACCAAATAGAAGGGGCAGCCAACTTAAGCTTCACAGTTCAGGATTACATGTCCTGTTATACG TATCCTTCGGAAACCTTGCTGTTTAATTTTCTTTAATTTTGGTTTGCCTTAAAAAAATTCCAGTTTTATACATTGTTTTC TTGTGTTCATGTCACTTTATTTAGGGATGGCTTTCATCAAGAGTTAAAAATCTGCTTACCCCCTTCTCTGTGTATTGTGC TTGGAGAGAGTCTGAAAAATGCATTACTTTAAGTCAAAATTTATTTCTAAATACTCTTCTGGTCATGTAGATTCTATCTG GTTTTATAGTAGCCTGAGGGTATCTTTATTGGAAACATCTCCAATCAATTTTGATGTTTGCTATATTTCATTTGCCAATA ACTTTTGCATTCAATTTAATTTCAGCAATGTTTAATTCAATGTCACTCCTTATTTTCCTTCTCTATTGACATGATAAATT AATTGAGCATAAAAAAAAGAATTATAAATAAAATTGTAAACATGCATTGACAATCTAATATCCCCCCCTCCCCCCCCCAC CCCTATACTGTCTTGTATGGTCTTTACTTAACTTGGGTATCTAGAACTGTTTATAACATGTGTACAGACCAAATGGGTGC TCATAATTGCCAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGAAATATATCAATTCCATAGTAAGTCTGATACTTA ATCCTAATTCCTATCTGAACCTTAGCTGTTCACTTACTGACATGCATCAACCACTAGGATTTTGTTTACATGGAAGTTCT AGGCCTAATAGTATATACTTAATAGCAATACACACTTTTCAATATGTGCTTAGAAGTCTCACATTGACTAGGCCACGTGT TTCTAAAGGGTAGAGCAACCCTCATTCCTAAGCTTGCTTTTGAGGGAGTTAGGCCTAACCCGAATTCTTATAATATGCTC TACATTGGTCCCAATTTTAAAAAATAACACATTTTATCTAGTAAGTGGGTCTCTTTTTAAAAGTACATTAACTTTTTAAA ATATGGACTGATCATAAAAAGTGTGTAAAGAGTGAATCAATAAAAGTGTGTTGTTAGCATTACTTGCACTTACATTAGCA TTGACATCATTAATACTAATAAGATTTTCTTATCTTTAGGTCCTTCCATCTTTGCAAGTAAAGAAAGATCGACAGTTGTT GATTGAACTGCTGAGAACATGGTCAAATTACAAACTTATGACCAAGTGGCTTTCATTGTCCTTCTGTTATCTTAACAGAT ATTACATCCCAAACAAGAATCTTACTTCTACTGAAGAAACTAGCTTCTTAATCTTCTATGACTTGGTTGGTGATGAGATT CTTAGAAAAGTTACATTGCGACTTTCTGAATTCTGATGTTAATTGGTTTTCCTTCATTCCATTTTTTTAACTCTTTTAGT TTACTTCTTTTATGTGTCTCAGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTATGGTATTTTTCT GCTTTCCATTTTCATATCTATCATCTTTAAAAGCATATGTACTTGATTTGTCTTCTTGGGGTGCACTACGACTCTGTTGT TGTTCATTGTTAACTTCCTTCAGCATCATACCATGCAAGGAAATGAAAAGTTGCAATTTTAAAACTTAACTGAAAGAAAT CAAATTGCGTTGCAAATAAGAGATGTTTGGCTTTGTTTGTCAGCATAATTAATGATTTAATCCTGTTCGGATTGACAGAT CTAGAGATGTTTGGTTTTGTTTTTCACATATCTACTTTATATGTTCCACTTTTATTGTAATAAAATGTTTTACTATATGT GAAATTCTTTAATGCACCTTAATGATGCTTTGATGTAATTCTATGATTATTAAGTAGTTGAATGGCAGTAATTTAGTGTG TGTTTGTATATCAACTGAGTGCAACATGAATAGACTTTCTCCACAATTCATAAGAAGAGTTTCATTCACTTTTTGTCTTG AAGTTTGTCCTAACATCCGCTTGCACTGGTGCTGATAGATATCCAAAACACAGCCTTAGTTATGTTCCTTCCACTATTCC ACTCGATGGACTTGTCTTTTTAAACGCAGCCATAGAGTGAGTGTTTGGTTTAAAGTTAGGATGATTGTTAACGGAGTTTT GTAGTTTTTCAAGGTGAAAAAGCTAATGGATCTGTGTGTTTGAACTCGACATAGATCCACATTGAAGCTAATGTTGCAAA ATCTTACTTTTTCAATCCATGTTAAATTCTACGTGGCAAATTCTAGCTTCTTCATTAGTACCTTGATCTAATCTTTGCCG GTTCCCCTGATTTTCACTGTTATGGCTCTTTGATCTTCATTTCTTGGTATCCAGATTGATCAGGGACGTGCTGGAGAGCA GATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGACATTGGAGTTATCCTAAGAATAAACAATGCAAAAG ACTTATTAGAAAGCTTGATTGAAGAGCATGGAATTGCTCATCTGCCTCAAATTCTGTGCAAGGTTGGTTCTCTCTTTTAG CCACTAAAGTATTTAGTAGGATAAATTGCATTTGCTACATCATAATTGAACGAAGCTACGAAGTAGCCACTTTGCCGTTT TAGTCTTTTGTCTTGGAAAATTAGACCACGTCATAACTATGACATTACGGACTTGACACCTTGTTTCCAATTTGAGCTCT TGTAGTCTGGCACTAAATTTGCTTTTACCTGAAAATATTCATAGGTCACAACCTTCTTAAAAGGAGAAAGTGTCAATTTT ATTTCCTGTTTCAAATGTGGGGCTGTCTAACCTGTCCCGAGTGATAGTGCATGTCTGGATACACGGTGGAAAACCACAGC GTGACTAAAATCATGGTGGATTGTCGCAAAAGCTAAGGAAAGTTACTTTTCACCGTGATTTCCACCGTGTATATGCACTC ATTCTAGGAGAACCAATAGGATCAACATAAATGTATTGAAAATTACATCAGCTTTTTTCCATACATGGCAATTTTACATG ATGGTTAATAGCATGTTTGGTTCACTTTTACTTTCTTCAGAATCAATTCTGAAACTCATAAGCTACTCACATAAGCTTCT TCTTAGAATTGATTCTGACTTAAAATAATCAATTGTGTTAGAATTTCCAAACATGCACTAAATAACTCATTTGGTTGCAG GAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCAGATGGAGATGTGTTTGAAGT TGACTGTGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCACTGAAA GCATTCTTGTCTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAATACTGCAAGAAGTACACTGAAGCTTCTGAT CCCAATTACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGGTGCTGAATTTATTGATCTTGACAATAACACTCT ATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGACAAGG TGAATTGGAAGGGTCCAATGGCAATTCGCCAGATGTTTAACATTAAGGATACCTAGGGTCTGCTACACCTGACAATCATT GCAATAGTGGATAAGATGGCACAGAAAGCTCCAGTGGTAATTCGCCAGATGTTTAACATTGACGACAACTAGGATCCATT TCAAATGTCTTCTGATGAGATTTTCAGCTAAATTTAAAGCTGGGTTTATTTTATGTTTAGGGTCTCTATTGGTTTACTGT TGAATAGAGTTATGTTATGTAAACTTATACAATTATGTTTGATAGAATTTTGTTCAAAAGAACAAATTTGTGTTTGGTAA TGATGTGTAGAAGTAAGTTTTGAAAAATAAATGCTGTTTTGATGGAATTAAGTTAAATCACTTTGTGGGTATAAATTACT GAAATGGATACTTTTTCTGCACAAGTTTTTCAAAGTTTGAAAGCACATTTTTTCTTGATAGATAAATGCTCAAATGAATT TGTACATGTTGTGTTGTAGGTTAACACACTCTTTTTAGAAACGGGGAAACTCAGGTAGATCTTAATTTACCATTTTAACT TTTTATGTGTTGGAGAAATTAACAAGTATCACGAATAATATACACAAGTATTTTTAATTGAACGAAAATATGAATTAAAT TTTGTCAGAAAATTATTTTAGATTATAAAAACATCCATGAAAAGGGTTGTGTACTGTTTTGATATTCACATGCAAGTGAC TTCCTTTGCCAAAAAAAATTGAGTTTTTTTTTTAAGACAAGTGTCCTTCTTCGGAGGCAATCC
CDS sequence (LotjaGi4g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAGCTGTGGACAGCCTCATTAA CCAAATAGAAGGGGCAGCCAACTTAAGCTTCACAGTTCAGGATTACATGTCCTGTTATACAACTGTTTATAACATGTGTA CAGACCAAATGGGTGCTCATAATTGCCAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGAAATATATCAATTCCATA GTCCTTCCATCTTTGCAAGTAAAGAAAGATCGACAGTTGTTGATTGAACTGCTGAGAACATGGTCAAATTACAAACTTAT GACCAAGTGGCTTTCATTGTCCTTCTGTTATCTTAACAGATATTACATCCCAAACAAGAATCTTACTTCTACTGAAGAAA CTAGCTTCTTAATCTTCTATGACTTGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTATGATTGAT CAGGGACGTGCTGGAGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGACATTGGAGTTATCCT AAGAATAAACAATGCAAAAGACTTATTAGAAAGCTTGATTGAAGAGCATGGAATTGCTCATCTGCCTCAAATTCTGTGCA AGGAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCAGATGGAGATGTGTTTGAA GTTGACTGTGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCACTGA AAGCATTCTTGTCTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAATACTGCAAGAAGTACACTGAAGCTTCTG ATCCCAATTACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGGTGCTGAATTTATTGATCTTGACAATAACACT CTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGACAA GGTGAATTGGAAGGGTCCAATGGCAATTCGCCAGATGTTTAACATTAAGGATACCTAG
Protein sequence (LotjaGi4g1v0344100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKCEKISNSFEEGWPLLEKAVDSLINQIEGAANLSFTVQDYMSCYTTVYNMCTDQMGAHNCQLLYGRYKEVFEKYINSI VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFYDLLHKKINVQVADAVTAMID QGRAGEQIDRTLVNNTLAMYSDIGVILRINNAKDLLESLIEEHGIAHLPQILCKEEIFPGILTPSSKKIRLVSSDGDVFE VDCGVGVGLMSKTIEDAIKTNPAGGTESILVYPVSSKILTKVIEYCKKYTEASDPNYKEGMSGVDIKDWGAEFIDLDNNT LLHLHICAKFLNIKSLLHLTNNAIADKVNWKGPMAIRQMFNIKDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 141 | 139 | 1.5E-30 | – | |
| PANTHER | 8 | 202 | 195 | 2.2E-52 | – | |
| PANTHER | 8 | 202 | 195 | 2.2E-52 | – | |
| SUPERFAMILY | 11 | 185 | 175 | 5.75E-37 | ||
| Pfam | 15 | 184 | 170 | 6.2E-24 | ||
| Gene3D | 225 | 365 | 141 | 9.2E-33 | – | |
| SMART | 226 | 333 | 108 | 7.0E-19 | ||
| Pfam | 227 | 290 | 64 | 2.4E-11 | ||
| SUPERFAMILY | 228 | 291 | 64 | 2.79E-9 | ||
| CDD | 228 | 346 | 119 | 2.60534E-24 | – | |
| SUPERFAMILY | 303 | 364 | 62 | 1.96E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0344100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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