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LotjaGi4g1v0344100.2

Overview

Field Value
Gene ID LotjaGi4g1v0344100
Transcript ID LotjaGi4g1v0344100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72395844..72402259) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGCCATCAATGGTGGTTTAGACTTTAGAGAGAGATGCAGACGTCACTGTTTCGACGCCTGGCTCCGTCGTTGGAATC GAACATGTTCGTATTCGTTCTTGCCTCTCTCGTCATCTGCCAGGTTTTACTTCTTTCTCTTTCGCACTCCTTCTAATTAT TCATGTCAATGATTTTAGGGGAATAGGGTATAATTTGATTCTGCAATTTTCGTTCACTTTTAGTGCCTAAATTGGTAACA GTACTTCAGATTTGCACTGAACTTTTGCAAAGGAAGAAAAACTAAAAGCTACATTTGGGTGGTTATGGTGGGGTTTGGGG AGGAGAAGATGGTGAATTTTTTGTTAAGAAGATGAATTTATTTTTTTGGGTGTAATACAGGTAATCATCCACCGGAGGCA ATCATGTTCAAGCTGGGAACATCCACATCTTGATGGGGCTAACTCCATCGGCGGGTATTTTTACATCCACAAGACTCGAA CCGAGACATTTTGCTTAAGAGGAATCAAGCATGTACTACTTGAACCAAACACCAGAAGATGAATTTCTAGGTAAGAAAGA TGAATTTCTGAAATTAGGAATAGGAATTAATGTTGTGGAGAATAGATGAATTTCTGGGTAAGATGATGAACTTTTGGTAA GATGATGAATTTCTGAAATTACGAATTAGTGATTTTTTTTTGTGTGGAGGAGAAAATATAATTTTATAAGTTAGATGAGT TTTTGGTCCCTCTTAATTTTTTTTTTGGTTTTAGTCCTCAACTGATACATCACCATCATGTTAGCATGCCACATAACTTT TGCCAGGACATGTAAGCAAGTCTCCATAGCTCATTCTTAGACGAGGGCTAAAACCAAGGTGTATGTAGGGGTGTTTTTGC AACTTTACTCCGTCTATGTCTTAACATAAATATGACTCATTTTACACAGACTAAAAACATAATTAACCCAAAAAAAAACA CTTATAGAATAATGGATGAGATGAATGAACTTTGTGGTTACCTCCTTAGGCAGCCCCCCTATTTCCATCGCTCGAGTATT GAAACTCGACATTTATTTTGATTCAATTCTCCTAGAGTCGTACGGTCTAGATGATGGTTCATCTATTATACTTTGTGTGT CTCTAATTATAAGACCCTTAAAACATAATCAACCCAAAAAAATATTTATAGAATAATGGATGACCAGATGAATGAACTTT GTGGTTACCTCCTATGGCAGCCCCCTCATTTCCATCACTCGGGTATTGAAACTCGACATTAATTTTGATTCAATTCTCCT AGAGTCGTATGGTCTTTATGATGGTTCATCTATTATACTTTGTCTTTCACTAATTATAAGACCCTTTTTTTGGTTACAGG AGGAAATTAATTAGAAGACCCTTTAAAGACATTTTTGGTGTCCCTTAATATAAAACCCTTACTAAATTTCGGAAAAAGAT TATTATCCTTTTCCCTATTATACATTTGTTATTCCAAAATTTTGATTACCACTAGTAATTAATTCTTTTCCATGTTACCT AATACATTAATTTCTGGTAAATATAGAAGATTGTATGAACTTTTTAAAACCAATACATTAATTAGGCTCATTACATCTTT TCTTAATAAGCATAATTGTCTAAAGTAATCAGTGACAAACACTATTTTTTTGGGTTTGTCATTCCATTGATGGGTGGATT CCATTTTTAAAACGGATTAAATGGATAACTTGAAATTTATCCTTGAAGCCCATGTAATTATTTGATCCATGATGGGTTTG GAAATCACAATGTCTATATTTATATTTATTAGACTTACGCTCAATTGTTAAGTGTTTTGGGCCAAATAAGTTACTTAAGG CCCACGATCAACCAAAACTAGGGTTCCATTACATCATATATATATGGCCAGAACTCCTCTCCTCTCTTGAACCTGGTTGC GCCGAGCTCAGTTATTCAGTTATAGAGAGGTAAACAATTCTGACTCTCACTGTGGCTTCAAGAGTAGTGCAATTTATATT AATCTAGTCAGTGTTCTGAATCTTGTTATAGATCTAGTCAATTTTATTTCATCATGATCAACATATAATTGAGATCATGG CTGGGTAACTCGTTTCGATCGGGTTAGGTGACTAGAAAAAAAGTGAAGGATGGTGTAGAAATTGATACCAGTTAGGACCA TACACACACATATATGTATGCAAATGGTGTTGAATTTTCAAATCAAACCTGGCTATAACATTTATTTTTATGGGGAGGAA ATTGACCAGAACTTATGCCATTCATATGTTGAAGTTTGGAAACAAAGCCGCTCTCTCTTTTCTTCTGCCACTATGATTGA TCTAATTTTGCGCCTGTTACTATTGCTTTAATTCAACATATTTGCTGCTGATTCAGTGAAACATGGACAAATGCGAGAAA ATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAGCTGTGGACAGCCTCATTAACCAAATAGAAGGGGCAGC CAACTTAAGCTTCACAGTTCAGGATTACATGTCCTGTTATACGTATCCTTCGGAAACCTTGCTGTTTAATTTTCTTTAAT TTTGGTTTGCCTTAAAAAAATTCCAGTTTTATACATTGTTTTCTTGTGTTCATGTCACTTTATTTAGGGATGGCTTTCAT CAAGAGTTAAAAATCTGCTTACCCCCTTCTCTGTGTATTGTGCTTGGAGAGAGTCTGAAAAATGCATTACTTTAAGTCAA AATTTATTTCTAAATACTCTTCTGGTCATGTAGATTCTATCTGGTTTTATAGTAGCCTGAGGGTATCTTTATTGGAAACA TCTCCAATCAATTTTGATGTTTGCTATATTTCATTTGCCAATAACTTTTGCATTCAATTTAATTTCAGCAATGTTTAATT CAATGTCACTCCTTATTTTCCTTCTCTATTGACATGATAAATTAATTGAGCATAAAAAAAAGAATTATAAATAAAATTGT AAACATGCATTGACAATCTAATATCCCCCCCTCCCCCCCCCACCCCTATACTGTCTTGTATGGTCTTTACTTAACTTGGG TATCTAGAACTGTTTATAACATGTGTACAGACCAAATGGGTGCTCATAATTGCCAGCTGCTCTATGGCAGATATAAGGAG GTCTTTGAGAAATATATCAATTCCATAGTAAGTCTGATACTTAATCCTAATTCCTATCTGAACCTTAGCTGTTCACTTAC TGACATGCATCAACCACTAGGATTTTGTTTACATGGAAGTTCTAGGCCTAATAGTATATACTTAATAGCAATACACACTT TTCAATATGTGCTTAGAAGTCTCACATTGACTAGGCCACGTGTTTCTAAAGGGTAGAGCAACCCTCATTCCTAAGCTTGC TTTTGAGGGAGTTAGGCCTAACCCGAATTCTTATAATATGCTCTACATTGGTCCCAATTTTAAAAAATAACACATTTTAT CTAGTAAGTGGGTCTCTTTTTAAAAGTACATTAACTTTTTAAAATATGGACTGATCATAAAAAGTGTGTAAAGAGTGAAT CAATAAAAGTGTGTTGTTAGCATTACTTGCACTTACATTAGCATTGACATCATTAATACTAATAAGATTTTCTTATCTTT AGGTCCTTCCATCTTTGCAAGTAAAGAAAGATCGACAGTTGTTGATTGAACTGCTGAGAACATGGTCAAATTACAAACTT ATGACCAAGTGGCTTTCATTGTCCTTCTGTTATCTTAACAGATATTACATCCCAAACAAGAATCTTACTTCTACTGAAGA AACTAGCTTCTTAATCTTCTATGACTTGGTTGGTGATGAGATTCTTAGAAAAGTTACATTGCGACTTTCTGAATTCTGAT GTTAATTGGTTTTCCTTCATTCCATTTTTTTAACTCTTTTAGTTTACTTCTTTTATGTGTCTCAGCTACATAAGAAGATC AATGTACAAGTTGCGGATGCTGTAACAGCTATGGTATTTTTCTGCTTTCCATTTTCATATCTATCATCTTTAAAAGCATA TGTACTTGATTTGTCTTCTTGGGGTGCACTACGACTCTGTTGTTGTTCATTGTTAACTTCCTTCAGCATCATACCATGCA AGGAAATGAAAAGTTGCAATTTTAAAACTTAACTGAAAGAAATCAAATTGCGTTGCAAATAAGAGATGTTTGGCTTTGTT TGTCAGCATAATTAATGATTTAATCCTGTTCGGATTGACAGATCTAGAGATGTTTGGTTTTGTTTTTCACATATCTACTT TATATGTTCCACTTTTATTGTAATAAAATGTTTTACTATATGTGAAATTCTTTAATGCACCTTAATGATGCTTTGATGTA ATTCTATGATTATTAAGTAGTTGAATGGCAGTAATTTAGTGTGTGTTTGTATATCAACTGAGTGCAACATGAATAGACTT TCTCCACAATTCATAAGAAGAGTTTCATTCACTTTTTGTCTTGAAGTTTGTCCTAACATCCGCTTGCACTGGTGCTGATA GATATCCAAAACACAGCCTTAGTTATGTTCCTTCCACTATTCCACTCGATGGACTTGTCTTTTTAAACGCAGCCATAGAG TGAGTGTTTGGTTTAAAGTTAGGATGATTGTTAACGGAGTTTTGTAGTTTTTCAAGGTGAAAAAGCTAATGGATCTGTGT GTTTGAACTCGACATAGATCCACATTGAAGCTAATGTTGCAAAATCTTACTTTTTCAATCCATGTTAAATTCTACGTGGC AAATTCTAGCTTCTTCATTAGTACCTTGATCTAATCTTTGCCGGTTCCCCTGATTTTCACTGTTATGGCTCTTTGATCTT CATTTCTTGGTATCCAGATTGATCAGGGACGTGCTGGAGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATG TACTCGGACATTGGAGTTATCCTAAGAATAAACAATGCAAAAGACTTATTAGAAAGCTTGATTGAAGAGCATGGAATTGC TCATCTGCCTCAAATTCTGTGCAAGGTTGGTTCTCTCTTTTAGCCACTAAAGTATTTAGTAGGATAAATTGCATTTGCTA CATCATAATTGAACGAAGCTACGAAGTAGCCACTTTGCCGTTTTAGTCTTTTGTCTTGGAAAATTAGACCACGTCATAAC TATGACATTACGGACTTGACACCTTGTTTCCAATTTGAGCTCTTGTAGTCTGGCACTAAATTTGCTTTTACCTGAAAATA TTCATAGGTCACAACCTTCTTAAAAGGAGAAAGTGTCAATTTTATTTCCTGTTTCAAATGTGGGGCTGTCTAACCTGTCC CGAGTGATAGTGCATGTCTGGATACACGGTGGAAAACCACAGCGTGACTAAAATCATGGTGGATTGTCGCAAAAGCTAAG GAAAGTTACTTTTCACCGTGATTTCCACCGTGTATATGCACTCATTCTAGGAGAACCAATAGGATCAACATAAATGTATT GAAAATTACATCAGCTTTTTTCCATACATGGCAATTTTACATGATGGTTAATAGCATGTTTGGTTCACTTTTACTTTCTT CAGAATCAATTCTGAAACTCATAAGCTACTCACATAAGCTTCTTCTTAGAATTGATTCTGACTTAAAATAATCAATTGTG TTAGAATTTCCAAACATGCACTAAATAACTCATTTGGTTGCAGGAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAA AGAAAATCAGGTTGGTAAGTTCAGATGGAGATGTGTTTGAAGTTGACTGTGGTGTGGGTGTGGGACTCATGTCAAAAACA ATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCACTGAAAGCATTCTTGTCTATCCAGTGAGTAGCAAAATCTTGAC CAAGGTAATTGAATACTGCAAGAAGTACACTGAAGCTTCTGATCCCAATTACAAGGAAGGCATGTCTGGTGTTGATATCA AAGACTGGGGTGCTGAATTTATTGATCTTGACAATAACACTCTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATC AAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGACAAGGTGAATTGGAAGGGTCCAATGGCAATTCGCCAGATGTT TAACATTAAGGATACCTAGGGTCTGCTACACCTGACAATCATTGCAATAGTGGATAAGATGGCACAGAAAGCTCCAGTGG TAATTCGCCAGATGTTTAACATTGACGACAACTAGGATCCATTTCAAATGTCTTCTGATGAGATTTTCAGCTAAATTTAA AGCTGGGTTTATTTTATGTTTAGGGTCTCTATTGGTTTACTGTTGAATAGAGTTATGTTATGTAAACTTATACAATTATG TTTGATAGAATTTTGTTCAAAAGAACAAATTTGTGTTTGGTAATGATGTGTAGAAGTAAGTTTTGAAAAATAAATGCTGT TTTGATGGAATTAAGT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0344100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAGCTGTGGACAGCCTCATTAA CCAAATAGAAGGGGCAGCCAACTTAAGCTTCACAGTTCAGGATTACATGTCCTGTTATACAACTGTTTATAACATGTGTA CAGACCAAATGGGTGCTCATAATTGCCAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGAAATATATCAATTCCATA GTCCTTCCATCTTTGCAAGTAAAGAAAGATCGACAGTTGTTGATTGAACTGCTGAGAACATGGTCAAATTACAAACTTAT GACCAAGTGGCTTTCATTGTCCTTCTGTTATCTTAACAGATATTACATCCCAAACAAGAATCTTACTTCTACTGAAGAAA CTAGCTTCTTAATCTTCTATGACTTGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTATGATTGAT CAGGGACGTGCTGGAGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGACATTGGAGTTATCCT AAGAATAAACAATGCAAAAGACTTATTAGAAAGCTTGATTGAAGAGCATGGAATTGCTCATCTGCCTCAAATTCTGTGCA AGGAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCAGATGGAGATGTGTTTGAA GTTGACTGTGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCACTGA AAGCATTCTTGTCTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAATACTGCAAGAAGTACACTGAAGCTTCTG ATCCCAATTACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGGTGCTGAATTTATTGATCTTGACAATAACACT CTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGACAA GGTGAATTGGAAGGGTCCAATGGCAATTCGCCAGATGTTTAACATTAAGGATACCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0344100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDKCEKISNSFEEGWPLLEKAVDSLINQIEGAANLSFTVQDYMSCYTTVYNMCTDQMGAHNCQLLYGRYKEVFEKYINSI VLPSLQVKKDRQLLIELLRTWSNYKLMTKWLSLSFCYLNRYYIPNKNLTSTEETSFLIFYDLLHKKINVQVADAVTAMID QGRAGEQIDRTLVNNTLAMYSDIGVILRINNAKDLLESLIEEHGIAHLPQILCKEEIFPGILTPSSKKIRLVSSDGDVFE VDCGVGVGLMSKTIEDAIKTNPAGGTESILVYPVSSKILTKVIEYCKKYTEASDPNYKEGMSGVDIKDWGAEFIDLDNNT LLHLHICAKFLNIKSLLHLTNNAIADKVNWKGPMAIRQMFNIKDT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.20.1310.10
3 141 139 1.5E-30 –
PANTHER
PTHR11932:SF133
8 202 195 2.2E-52 –
PANTHER
PTHR11932
8 202 195 2.2E-52 –
SUPERFAMILY
SSF74788
11 185 175 5.75E-37
IPR016159
Pfam
PF00888
15 184 170 6.2E-24
IPR001373
Gene3D
G3DSA:3.30.710.10
225 365 141 9.2E-33 –
SMART
SM00512
226 333 108 7.0E-19
IPR001232
Pfam
PF03931
227 290 64 2.4E-11
IPR016073
SUPERFAMILY
SSF54695
228 291 64 2.79E-9
IPR011333
CDD
cd18322
228 346 119 2.60534E-24 –
SUPERFAMILY
SSF81382
303 364 62 1.96E-13
IPR036296

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0344100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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