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LotjaGi4g1v0351800.3

Overview

Field Value
Gene ID LotjaGi4g1v0351800
Transcript ID LotjaGi4g1v0351800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R0EW30|A0A0R0EW30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0351800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73048196..73051458) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGATCTTCAGCGATGGTTTTGGACCCAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTA CCTCTACGGCGGCGATATTGCCTCCGACGAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCA TCGATATCCAGGAGGAGTACGTTAAGGATGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAA AGGATCCAGTCGGTTCCTCTGGTTATTGGCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTAC TGGATCCAACTACTATGTTCGGATTCTTAGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACC GCCATTCCAATGCTCTCGTCGATGTTCTTCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCA GATGTTACTTACAATGTTAGTTAGGGTTTTGCTTTCAATTTTCCCTAATTTCGGCTTAATTTTTTAATTGGAGATTGCTT GATTGATTATTAGGCTTAGTTGTTGTGGAAATTAAAATTTAGGTCTTGTGTTTGTTGTTTGAACTATTTGGGTATAATCA GAATCATGATAGGAAGAGGGCATTTTGCTTTGAGGGAAAGGGTAATGGTTAGTTTGCTGAGGAGGGTCATGACTGAATTT GTGTTTGTGTTACTTAGGGAGTGTGTTTTTGTTTTTCATTGGTGCAATTTTGGATTGATAGTTAGCCTCTCCCTCAGCAG CATGTGACCGTGGAAAATGTCTACTTTGTTCAGTAGAATTCAAGTGTCATGGGTTAATAATTGCAATATTGCAATACAAG CAAGAGAAGACTATTCCTGTTTCAAAAGTGAGAGTGAGAGCCATAGATAGATAGGGGGCGGGGGTTCCTGAGTTTTCCTG CTTCAGAAGTTATAGTGAGACACTGAGACCCATAGATGAGCTTGATTGGGGGAGGGGGTTCATTTGGTTCTTTATTGTAG CTTGGAATCCTGAATGCCAGAGGTTACAACTTACAATTCATTTAGTTACATGTTAAGTGCTGTTGGGTCTACCAGGTTGT AGAGCAGTAAAATAGGAACTTAAATACTAGGTCCATCATTCTGTATGGGCATGAATTTGGCCTTCCAAGAAATGAGATGG AGTGTAACAAGGAAAATGAAACCGATGGTGAAGTGTATATGATACGGGCAGTCAGGCACATTATTTCTGGAGCATAATTG GTTTTGGTCTAGCCAATGATACTGATACTAACAAGTATAAACATTTGATTTTTGTGGCATACTCCTATATTTGTTAGACC TCCTGTGTTGTGTGAATTCTCTTTCAATTTAAACTATTTTTTGTATGGCCTGTTGATATGGTTTTGATTTGTTTTAGGAC ATTGGAGGGTGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAGCTATACAAACA AATTGGTATTGATCCTCCTCGTGGTGTACTACTATATGGTCCCCCTGGCACTGGTAAAACCATGCTGGCTAAGGCTGTTG CTAATCATACCACTGCTGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGCGAGGTATCGATTTCA TGTCATTTGAATTTGAAGTGATGTTATTAATGTTGTAACTTTCTCTGTTTTATTAGTTTGCTTTTGTAGATTATGCATTT CAGGTTCACAATTATTGATGTTATTGTGCTCTTCATGTTTTGTACTTGTGTTTAAAGATTGTGGATCATCTGTCCACGAT CATAACTACGTAGTTCCTGAAATTTGTTGGGAGTTTCAAAAATTTTATTCTCTTCCTAAAAGATGAATTAATTGTTTACT AGTGGTTTGTTGCAACATCTTCTAATATTATCTACTATCTACGTTTCAGGGTCCAAGGATGGTTCGTGATGTATTTCGGC TTGCGAAAGAGAATGCCCCTGCAATTATATTCATTGATGAGGTTGATGCAATAGCTACTGCTAGATTTGATGCACAAACT GGAGCTGACAGAGAAGTACAACGTATCCTCATGGAACTTTTGAATCAGGTATCTTCAAAAAGTTATTTCTATCAGGTTCT TTGAATGTGTTTAACAATGCATTAATATGTGCTAAGCTATACTGAGTAACATTGATTTAGTCTTCCCTTATATTCTTTGA TTTGACTACTCAGCACTTCCTCTTTGGTTTTAGATATTCTCTGAAGTGCTGGTTTAACAGACTTTTCTTTGCTTCAGATG GATGGTTTTGACCAAACAGTGAATGTTAAAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGCTCTTTTGCG TCCTGGAAGGCTTGATCGCAAAATCGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGGCAAGTCTTT CACATTTCTTTCTGTTATAATTTCTTACTGAGTCAGTATTCCATGTTTATGCTCAACTATCATATTTTGAGAAGTTCCAG TTTGATTTGCAAACTTTCATTTGTTTTTATATTGAATATCGAATTATCTAATATTTTATTTTCAGCTGCTTTTCAATCTA TTATTTAATGGTTTATTTTTTAACAGGTTTGCACAGCCAAGATGAACTTAGGTGATGAGGTGGACCTGGAAGATTATGTT TCTCGACCTGACAAAATTAGTGCTGCGGAGGTTTGTTCATATCTTATCTGATAATTTTCACGATGCTAATCATTTTTTGT ACAAAGACTTTGTTACTAATTGCATGATCAGAAATGGTTGATTAATCTGTCGAATTTGTTTGAACTATTTTTGTTCTTCT CCTCCATCATCTTGCAAGAAGGCTTAAAGCAATTATGAAAGTGTTTTTCTTTAGGAGTTTTTGGCAGATTCATTCAGAAT CTCTTTGTTCAACAATTTTCTGATACATAGTTGAAGACTTGCGTACAAAATATGCTTTGCTTCTTTTGATAGTTTCATTT TGAATTGTTAACTGCTACCTGAAAGACTTGAGCTATTGTTTGTATTATATAAATGACATCAATTATTTCATGATTTTGGT TCCTGCAGATATCTGCCATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAAAATAGATATGTCATACTTCCAAAGGAC TTTGAGAAGGGTTATAGGACGAACGTGAAGAAACCTGATACTGACTTTGAATTTTACAAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0351800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATCTTCAGCGATGGTTTTGGACCCAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTA CCTCTACGGCGGCGATATTGCCTCCGACGAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCA TCGATATCCAGGAGGAGTACGTTAAGGATGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAA AGGATCCAGTCGGTTCCTCTGGTTATTGGCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTAC TGGATCCAACTACTATGTTCGGATTCTTAGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACC GCCATTCCAATGCTCTCGTCGATGTTCTTCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCA GATGTTACTTACAATGACATTGGAGGGTGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACA TCATGAGCTATACAAACAAATTGGTATTGATCCTCCTCGTGGTGTACTACTATATGGTCCCCCTGGCACTGGTAAAACCA TGCTGGCTAAGGCTGTTGCTAATCATACCACTGCTGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTT GGCGAGATGGATGGTTTTGACCAAACAGTGAATGTTAAAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGC TCTTTTGCGTCCTGGAAGGCTTGATCGCAAAATCGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGG TTTGCACAGCCAAGATGAACTTAGGTGATGAGGTGGACCTGGAAGATTATGTTTCTCGACCTGACAAAATTAGTGCTGCG GAGATATCTGCCATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAAAATAGATATGTCATACTTCCAAAGGACTTTGA GAAGGGTTATAGGACGAACGTGAAGAAACCTGATACTGACTTTGAATTTTACAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0351800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSSAMVLDPKPVSEPPPSFPSTKSGYLYGGDIASDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVK RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL GEMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAA EISAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR23073
27 242 216 2.7E-200 –
PANTHER
PTHR23073:SF8
27 242 216 2.7E-200
IPR035256
Gene3D
G3DSA:2.40.50.140
44 156 113 2.1E-28 –
Coils
Coil
58 85 28 - –
Pfam
PF16450
89 144 56 4.8E-9
IPR032501
Gene3D
G3DSA:3.40.50.300
157 242 86 1.1E-30 –
SUPERFAMILY
SSF52540
160 351 192 1.81E-45
IPR027417
CDD
cd00009
168 282 115 1.31131E-15 –
SMART
SM00382
198 284 87 5.2E-9
IPR003593
Pfam
PF00004
202 243 42 1.3E-12
IPR003959
PANTHER
PTHR23073
242 361 120 2.7E-200 –
PANTHER
PTHR23073:SF8
242 361 120 2.7E-200
IPR035256
Gene3D
G3DSA:3.40.50.300
243 283 41 6.7E-13 –
ProSitePatterns
PS00674
252 270 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
286 365 80 2.3E-19 –
Pfam
PF17862
305 347 43 8.2E-8
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0036402
Molecular function Proteasome-activating ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0351800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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