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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0360000 |
| Transcript ID | LotjaGi4g1v0360000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT2G34590.1 Transketolase family protein; Swiss-Prot: sp|O64688|ODPB3_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic; TrEMBL-Plants: tr|I3SEX4|I3SEX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0360000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73899892..73906467) extracted from Lotus japonicus Gifu genome v1.2.
GATGAAACTAGTGAATGCAAACAACAACCATAAACAGAACCAAGTGTGACAGGTATGTGGAATGTGAGGTCCCATTAATC AGGTCCAATTTAGGCCACCAATAAGGCATCATCGTCCATAACAAAGACCTCATTTTGGCGATGGAAACTATGCACCAGCT TGGTTACAACTAGTACTTAGCATTAGCAATAGCATGTGTGTGAGAAAAGAGAGAAAAACACAACACAACACAACACAAGC TCAAAAATCTTCATTGATTTCTCCGCCCAATTTTCCTGTTATAAATAAAGTCCTAATCTTTTTCCCTCAAACTCTTCATT TCCATTCTTTTTTGGTGATCCAATGGCGACCCTTTTCCAGGGATTGGGAGCTCTCACTTCACTATCTCCCTCCAATTCCA AAAGGTCCCTGCTTTCTTCTCGTAGATCCCTCTCAGGTTCGCTTCTTCAAAGATTTTTCTTTCAAATTTGATAATTGAAT TGATTTTATGATTTGTAGCTGATGGGTGATTCTGGTTTTGGATGCCAAATTTTGAAGGGGGTTATGTAAATTTGGGATTT TGATTTTGGTGGGTGTGGTTTTTTTTATTGATTGATGCAGAGAGGAAAGCTGGAATCTTTGTTGTCAGATCTGATGCAAG GGCGAACCAGACAGGAGCTCGCAAGCATGATTTGTTGATTACCAATGCAGTTGCAGTAAGTTATTTCATCACTCCCCTTT CCATTCCCTTTTTTGCAGTTTGATTTGGGATCAATGTGAAGTGTTTTGCATGGTGTTATCAAGTTTTAAAATGGTGTTTG TTGGTTGTTTATAGACAAAGGAGGGCAGTTCTGTGGCTTCTACATCAAAACCTGGGTATGTGTCTACTCTCTAGTTCTGT AATCACTTTTTGTTGTCTTTCCATGTTATACAATTCAGTGATAGTGATTTATTATTATTGTTTAAGATGAAGCTATGGTG ATATAACATCAACAACCAATCCCTTATCCCACTTTGAGTTCGGTTATATGAATCACACGATGCGATTGCGGTCGATCAAA AAACCATTTTTCGTGGGATATTATTGACAATAAATAAGTCAGTTTTGACAATATCATCCAATGTTCTTCACAGAACTTAG GACCACGTTATCAACTCTTCTCTGTGGTGCATCCAAAAGACTTCTTTGTGAATGTCCGTACCATCTTAACTGATTTTCCG TCAACTTTTCATCGATAGGCACTACCCCAATATATTTTTCTTATATGATCATTGCGCATCATGTCATTTCTAATGTTGCC ACGCATCTATCTTAACATTGTCATTTATGCTACTCTATCTTTTTTCTGCTGTCCCTTTAAAGCCCAACGTTCACTACCAC TGAGGATAATGAGTCTTATAGAAGTTCAGTAAAACTTTCCTTTGAGATTGGTAGGTACTTTGTGGTCACAGATAAGATAA CTCGTGATGTTTTTCTCCACTTTAACCACCTAGCTTGAACTATTTGTATAACATCTTTGTCAATTTACTCATTATTTTGT ATAATATATCCCACGTACCTAATCTATGAAACCTGTAGTATGATGTCATTTCCACTTCCAGATTACTTCCTATACTAGTG TTAATAAAATTGCCATGCATATATTTTGTCTTACTCGATCTTAATTGAAATCCAATAGATTCCGAAGTCTTTCTCCAAAT CTCAAGTTTAGAATTAACCGCTTCTCTTGATTCTTCTATTAAAACTATAGCATCCGCAAATATCATGCAGTTTAGTGCTC TTCTGTATATCCCTGATAAGCATGTTCAAAACAGGATTAAACAGATACCAATTACCTTCCTCCACTAACTTTCTCTTAAA AGTCAAATAGTTTCTCTCCCTTGAGCTGCCTCCACTTAATTCTTGGGTTTGTAACTTGTCAATTTGTGACCTCAAGGCCC CGCTTTTATTTGTAATAAGATGTGCCTCCCGCTTTTTAAAACAAAAATTCAAAATCTTGAGGTCATATGCTAAAGAATAA TTAAAATAGATTACACGTCCAGGAAGTTGTGAGGACCCTTGCTCATTTCACTTTGTATAGGGGCTTTGATGCAAAGGCTC TAGCTGATTTAACACTGTACTTGACTCATACAACACGTTGCTTTCGGGCAACGACTTAGTATTAACACAAATCTGTCGTG TTTGATCCATATTAAAGATATCGGTTAGTTTGACGTGGGCTGCCGAAGGCCTAAGACAACATTCTTCCTTTACCCAGGCT TTAGGATCGGCTATGCAAGCATAGGCATAGTTATGAAGCTGTGGTGATATGTTTACACTTTTGCTGACAGATTGTCTTCT TTATATAACCATGTTCAGATTGACTTTTGCTCACAGATTGACTTCTTTATATGAAGCTATGAATAGATGAATTGTTCCAG TTTTTTTCCTGGAGTTACACGTAAAAGTAATCTAATATGGTCTTTGTAGTATAAACGCTTGGGTGGGGAGTGGAAATGTG GACAGATTTTAACATAGTAGAATCTACCTTTGCAGTTTCCAGTTTTTCGTAGTTACTCAATTTAAGCATAGCGTTAGAAT GTGCTTGGTACAGATGAAAATATAAGCATTGGAAAGAGGGGAAGTCATATTACTGAAACATGGCCAAAACTTCCTTACTT ATTGATGTGTTAATAATGTGTGGAGTTGGCTACCAATTAAGCATATTTTCGACTTCTGATAAAATGAAATGAAAGTAGGT CCTGATTTTTTGCCAATTATTTAAGGTGCTAGTTTCTTAGTGACACAAGCAAGTCACACTTCTTCACTGGGTTAAATGAA AGACTTTATTACAAACATAAAAAATCATCCTGGACTCCCTTGTTTGGAGGGCCAGGACAGAATAGAATGAGACAGAGGAT TGCTGTGTATTAGTGAGAAGGGGATCAGGGAGACAGAAAAGTTGAGCAAAATGTCTGAAAAGGTACTTGTGTAATTGGTG GCCCCTTGGTGTTGTACTTTTAAACTTTTTAATGCAACGGCAAGGGTCAGATTATTCTTGTCTGAGTCAAAGCTCACGAC ATTACTAAGTGGGGTTTTTACAGTTTCATATCCTTGCAGAACAAAGGGATTGAAGGCGTACGGCCCTTAGCTTATTTTAC TCTGCAAGGGCCCTCACCTAGGCTCCAAAGTTAGGGCCTGAGTGAAGGCTCATTGCCTGAGAAATCAAATGTAAGCTCAT AGCCTTTTGATTACACTTGCATAGCCTTGGAATAGCTCATCCCTTGTGCTGGAGAGTATCACAAGTAGGAGGGTTAAAGG ATTAAGTGGTGATCTGAATGTTGCAGTAGAAGTTAAGATAAAGAGTATATTCTAGTAATGTTCCACGTCCTTTGGTTTTA AATGAATATATTATTTTCTGGTCACCTGAATTGGGTGCGAGACACACCCATGGCGCTTCCTTCTGTCCAGATTTTTAGGA TGTTTTGCTCTCTTCTGTGAATATGTACGTGCTTCATAAAGATTGTCTTCTCTTTTGACTCAACAAATGATTCGCCAAAC CCCATGAGTTAGTTAATTTTATGGTAATATTTATTTTGAATTTTAGTTGATTTTATAAGAACATTAGTAAATATATGACT GGAAGGTAAAAGTAGTTACTCTGGGCCACATACTTGTCACACTTAATTCAGAACATTAGTAAATATATGACTGGTTGAAG CTACTAAAAACATGCTTTGGCATTCTTTTTTTCTCTCTTATTAGCTTCACTTATTGTAGAGTTATGATCAATAACAATGG AATTGATGAGATATGCATCTCATTTTCAGGCATGAACTTCTCCTTTTTGAAGCCCTACGTGAAGGTTTGGAAGAAGAAAT GGAGAGGGATCCTAATGTATGCGTTATGGGTGAAGATGTAGGTCATTATGGAGGATCTTACAAAGTGACTAAAGACCTGG CCAACAAGTTTGGGGACCTGAGAGTTCTGGACACCCCTATTGCTGAGAATGCCTTCACCGGCATGGGCATTGGAGCTGCC ATGACTGGTCTAAGGCCAGTTATTGAGGGCATGAACATGGGATTCCTACTTCTCGCATTCAACCAAATCTCTAACAATTG TGGGATGCTGCATTACACATCTGGAGGCCAGTTCAAAATCCCAGTTGTCATTCGTGGACCTGGTGGAGTCGGGCGGCAAC TCGGAGCCGAGCACTCACAGAGACTGGAGTCTTATTTTCAGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCT TACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGATAACCCCGTGATCCTTTTTGAACATGTTTTGCTTTACAA CCTCAAGGAGAGAATTCCAGATGAAGAGTATGTGTTGTCACTTGAAGAAGCCGAGATGGTTAGACCCGGGGAGCATGTCA CGATATTAACCTATTCCAGGATGAGGTACCATGTCATGCAAGCTGCAAAGACATTGGTGAACAAGGGGTATGACCCTGAA GTAATTGATATCAGGTCATTGAAACCGTTTGATCTTCACACAATTGGGAATTCAGTAAAGAAGACACATAGGGTGCTGAT TGTTGAAGAGTGCATGAGGACTGGTGGAATTGGTGCTAGTCTGACTGCTGCTATTAGTGAAAATTTCAATGACTATTTGG ATGCTCCCATCGTTTGTTTGTCATCTCAGGACGTGCCAACCCCATATGCTGGACCGTTGGAAGAAATGACGGTGGTTCAG CCTGCTCAGATTGTGACAGCAGTTGAGCAGCTCTGCCAGTGAATGCAGCAAAACATGTGCAATTAGGACATGTTTTTTTC GGTAATGCTATTGTGCTTGTTAAGTTAAAATAGAACTTTGGTCAAGGTTTTCTCATTTCATTTGTTTTCTTTCCCTTCTA AAACCCCCATAAGTTATGATTGCCATTTAATTTCTAGTATCCTTGGCAAATTTTTTAAAGAATGTTTAGAACTGTTCACC CAATCTGAGGCTTTCTAATTAGTTCATCTACATCTAGGGAAGTATTTGTAATTGATGTTGATGTCAGCTATTGTCTGTTA TAGGTCTAGTTAATTTTGAGTTCACTTGTATGGATGTAGTAGTTTGTTCTCATTGATTTTGAATGTTATATTCAATTCTA AATGTCACACGACTTCTGGGTGTTTTTTTATTTTAATTCCAAAGTTTGGTGTCAGTTTCAAACCTTGAATGGGTTTTAGC TCTGGGATTGCTCTACTGTGTATATTCATTCACCTGCAGAAACATGATCAAACAGCTTGAATTTTTCTATTTCACCAAAT AACTTTGCGTATTTATCATCTTAGTGCATGTTTGGATCGGGAACGAGCGTGCTTTTTCCCATGTTTTTAAAAGCCTTCAA AGCTGAAGGAGAAAATTGTTGAATTGGAGTTGAAAGTCCTTTTTCCGACTTTTTTGTTGTTGAATTACTGTTCTCCAAAC CACAACACACTCTTAATATGGTGAATATAAAGTAAATTCAGTAGTAGCTAGTACTCTTAATCTTTTCGTACTATATCCTC AATGGCTATTGTTCTTTCTAATTGTTTTTCAATGAGCACATGCATGCAAAGTACATCATTTATACGGTATTAGTTTCCAT TACATAAATGTTCTAATTTTTTTGAAGATAAAAAACAACAACGGAAGAAGGAGAGTTGGGTGAAAACAAGGAAGTTTGCT AGATTGGTAATCTGGGCTGGATCGTTGTATTCTTAAAGTCCATATCAGTTTGGAAAATAAAATATGACTTCGGCCGCAAT CAACCTCTTCTCAACTAGACTTTTCTGGTGAGTTTCGGGCTGCCGCCCCATCCCTCCATGGGAGAGGACTCTCTCCCGGC CACTGTAGGTGGATTTTCTGATTTCTCCCGTTTTAGTGGCGTTTTTCTCTGGTGTGAGATCTATGTTTCCTTTTTCCACC TCAACCACCGCCAAGTCACTACCCACTTTATCCCTCTAGCCACTACCTCCTACCTCATTGAGAGCATTTTCTCCTGCCTC TACCATTCCCTTGTTGCTCTTTGTCAGCCATCGTACAGCCTCGCTATGCACCTGCACCCTCTTCCCTCCTGTCGGCCCCC TCCATCACTCCCTAATTCCGGTTCACCTCATGCCTTTGTATTCCTTTCGCCCTGTCTACCTAAACTACTGCCCTCTCCCC TTCAATACATGTTTTGGTCATCCATTTGTCTTTGGTTTGGTGTGGCTTTGTTTGCGCCTTCTATTGTGTTGATTTATGTT GGTCTTTCTTGCATGCTCTGAATATGTACAACTTCAATAGAGTCGAATAGGTTTGAAAAATCTGAAGGAGCGATAAAAGA AAGAATAATATCAAATTTATACTTTACGGTTAGCGGATTAGAGACTGCGATGAAAAGGCTACTAACTTGGCTGATTGCAC TACAGAAAAAGGCATCTACTCAAACTGCTCCCATGATTGACAATCGATTCCAATTTCATGTAGGCGAGTTGCAGCCTACA ATCCTTCATTTTTATCCCATTATAATCAAATTTTCAAAATTAGGATTGTTCTGATTGCTTATGCAGTTATTTTTCTTTTA TTTTGCTGTTATGTTC
CDS sequence (LotjaGi4g1v0360000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCCTTTTCCAGGGATTGGGAGCTCTCACTTCACTATCTCCCTCCAATTCCAAAAGGTCCCTGCTTTCTTCTCG TAGATCCCTCTCAGAGAGGAAAGCTGGAATCTTTGTTGTCAGATCTGATGCAAGGGCGAACCAGACAGGAGCTCGCAAGC ATGATTTGTTGATTACCAATGCAGTTGCAACAAAGGAGGGCAGTTCTGTGGCTTCTACATCAAAACCTGGGCATGAACTT CTCCTTTTTGAAGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTAATGTATGCGTTATGGGTGAAGATGT AGGTCATTATGGAGGATCTTACAAAGTGACTAAAGACCTGGCCAACAAGTTTGGGGACCTGAGAGTTCTGGACACCCCTA TTGCTGAGAATGCCTTCACCGGCATGGGCATTGGAGCTGCCATGACTGGTCTAAGGCCAGTTATTGAGGGCATGAACATG GGATTCCTACTTCTCGCATTCAACCAAATCTCTAACAATTGTGGGATGCTGCATTACACATCTGGAGGCCAGTTCAAAAT CCCAGTTGTCATTCGTGGACCTGGTGGAGTCGGGCGGCAACTCGGAGCCGAGCACTCACAGAGACTGGAGTCTTATTTTC AGTCAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGT GATAACCCCGTGATCCTTTTTGAACATGTTTTGCTTTACAACCTCAAGGAGAGAATTCCAGATGAAGAGTATGTGTTGTC ACTTGAAGAAGCCGAGATGGTTAGACCCGGGGAGCATGTCACGATATTAACCTATTCCAGGATGAGGTACCATGTCATGC AAGCTGCAAAGACATTGGTGAACAAGGGGTATGACCCTGAAGTAATTGATATCAGGTCATTGAAACCGTTTGATCTTCAC ACAATTGGGAATTCAGTAAAGAAGACACATAGGGTGCTGATTGTTGAAGAGTGCATGAGGACTGGTGGAATTGGTGCTAG TCTGACTGCTGCTATTAGTGAAAATTTCAATGACTATTTGGATGCTCCCATCGTTTGTTTGTCATCTCAGGACGTGCCAA CCCCATATGCTGGACCGTTGGAAGAAATGACGGTGGTTCAGCCTGCTCAGATTGTGACAGCAGTTGAGCAGCTCTGCCAG TGA
Protein sequence (LotjaGi4g1v0360000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLFQGLGALTSLSPSNSKRSLLSSRRSLSERKAGIFVVRSDARANQTGARKHDLLITNAVATKEGSSVASTSKPGHEL LLFEALREGLEEEMERDPNVCVMGEDVGHYGGSYKVTKDLANKFGDLRVLDTPIAENAFTGMGIGAAMTGLRPVIEGMNM GFLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS DNPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLH TIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGPLEEMTVVQPAQIVTAVEQLCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 11 | 400 | 390 | 4.0E-235 | – | |
| PANTHER | 11 | 400 | 390 | 4.0E-235 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 400 | 381 | - | – | |
| Gene3D | 78 | 267 | 190 | 1.0E-75 | – | |
| SMART | 80 | 255 | 176 | 2.5E-55 | ||
| SUPERFAMILY | 83 | 278 | 196 | 5.35E-64 | ||
| Pfam | 84 | 254 | 171 | 5.3E-47 | ||
| CDD | 84 | 250 | 167 | 1.7843E-103 | – | |
| SUPERFAMILY | 263 | 399 | 137 | 2.75E-36 | ||
| Gene3D | 268 | 400 | 133 | 1.3E-38 | ||
| Pfam | 270 | 391 | 122 | 8.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Pyruvate dehydrogenase (acetyl-transferring) activity | Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. | ||
| Biological process | Acetyl-CoA biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. |
Expression pattern of LotjaGi4g1v0360000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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