Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0362600 |
| Transcript ID | LotjaGi4g1v0362600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZM74|RN141_CHICK RING finger protein 141; TrEMBL-Plants: tr|A0A151U8S4|A0A151U8S4_CAJCA RING finger protein 141; Found in the gene: LotjaGi4g1v0362600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74148648..74151324) extracted from Lotus japonicus Gifu genome v1.2.
ATCGAAGTTGTCGTGACTCATCTTTCCACTGTGACAGACACAGACACAGACACAGTCATCGAATAGAACGAAACGCAAAA CCGCACTTCATTATACGACACTCCACTTCGGCAGTTCCTATTCTTCCTTTCTTTCCCAAAAACTCACCCACCACAAAGAA ACCAACACCTTTCCTTTCTTCTTCTTCTTCTTCACCCTCATCGATTCTACACAAATTAGGGTTCACAAAACCTCATAATT CATCATCATCATCATCATCATCATCATCATCATCATCATCCACACTCACAAAAAAATAGAAAAAAAACTGCTTATAGAGA AGTTTGAAAGTGAGGAATTGTTGATTTTTTTTCTGTGACCCTTTTTGGTTTGAAGTCTGTCACAGGGGAAGAAAGATGGA AATGATGCCGTACCAGCTTTACCGGTTGCCTTACCATGATTCCCTCAAATTGCTTGAGGCTGATATACAACACGCCAATG CTTTGTCAGTTTTTTTTTTTTTCGTTCTGCCCCACTTTAATTTTTGTTTTCTTTCTTCATTTATGTGTTTTGGTTTGTTT GTATATGATGAAATTTGAAGAAGATTGAAGTAAAAAGAGTTTTTTTTTTAGAGAATCAGTTTTGACTTGATTAATTGCTT TTAGGACTTGAAATGGACCATCATAGTTGTTGCTTGATAAGTATTTGCTTGCTGCTAATTGAGATTGTTATCTTTAATTT GATTTCTAGTGGTCAATAAAGTTGGAATTTTTTTTTAGTTATACAAGTTTGATGAATTTGTAACTTATATACTGGAATTT GGTGGTTAATTTGATGGTTATATTCTTTGTTTTGAATTTGGGGGTTAATTTGATGGTTGAATTTCAATTGTGGGTCTGCT GTGTGTTCTGTAGGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGAGTGTTCTTCAAATGAAATTGGTTTATAGTCACTTG GCTCCTCTCTTTCTATTGTTCTTAGAGTGGATGGATTGTTCTTGTGCATACTTTCTTCACAGATATCTCAGCCTCTTCCA CATACTTATTTACAAGGTGAGTTCCTGGATGAATGGAGGTCCTCCACAATAACACTTCATTCGAAATTTAATTCAATTCA CACTAAGAGTGAGATAGGATGAGAAGAAAGAGAAATGAGTGATATGATAAATGATGTCATAGGAAATGCAGTGAGAGATA AGAAGAAAAACTGAGTTGAAATGAGATGGAAGGGAAAGTCTGTATGAATGAATCATTTACTCAGGTCCTCCATAATTCTA GTTCTTGTAACTGTTCACTGAAGAAATTTGGTTTTGTCCTGTTCTATTTCTGTTCTCTTATGGGTTTGCTAATGCTTTTT TTTGTAATTGAGTGTTGTTCTTTTGTTGTTGTTGATGTTGTTTTTGCTGTCCTGTTTTTTCAAAGGTACATAATGATGGT AGATCAAGTATAACTTCTCATGGAAGAAAGGCAACCATTCAGGACTTTTATGGTGGGTGTGAACCTTTGACTTTCAAAAA GCACATTTTATTTAGTTAAAAAAAAGAAAAGAAAAGTATACTCTTTGTTTTGTCTGCTCTGACTAATTTCTCACTGTTTT TAAATGTTAAAAATGAAACCTTAGCCGTTATACTGCCATCCCTCCAGCGGCTTCATGGCAGCTTGGAGAAGTTGGAGATT TGCATGAAAGGGTCCTCTACCATGGAGTTCTCAAGTTATGGCAGGAAGATGATTGAAGGAAATGGGAAATTAATCAATGT CGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTA TGTGTATCAAATGCTACCGCAAGTGGTAATGACATTATATATCTCTATATCTCCATTTAGTGTACTCGTTCGAGAATCAC GGTGAAGCCAAAATCATGTTGGACAGAAGCAAAAGCTACGGAAAGTTGCTTCTGTCCACCATGATTTTGGCTTCACTGTG GTTTTCAAACTGAGTATATTTGAATTTTGGCTTATCATTTGTAAACGTTCTTATGCTAATCTTTCCAACATGCAGGAACA CGCGATCGGAGTCTTGTCCATTTTGTCGTGGTAGCTTAAGGAGAGTTAATTCTGAGGATCTATGGGTACTCACTTGTAAT GAAGATGTTGTTGATGCTGAAACAGTTTCCAGGGAGGACTTGCTGCGTTTTTACCTTTATATCAATAGCCTACCTAAGGA TTATCCAGATGCACTTTTCTTAATGTATTATGAATACTTGATTTGATTCTTACTGAATGAGGAGAAAACTGTACAGATAG GGAAAACTGCAAATGTGATTAGTAGAGTCTGGTTAGAAATATCTCTGGTGATGTCAGGCACAAGGCACAATTCTGAGATG ATAAATTTCTTGATTTTAGCTCAGAAGGCTCATGCTTGACCTATGATATGTGTAGTTGTTTAAGTTCCATTAGCTGAAGT TTCCTAAGGAACTCATTCAGATGTAATGGTCCATTATCCTATGACTACATAATACATGTATGTTCTTCAGAAAGATGTGA ATCAATGGGAGTCAGTTATATTATTTGTTGACCAAAAGATTTAAAACATTTTTATTCTGGATAATGATGATGGAATTATT AGTTAACACAGGGTGTTCTGCATTGATCAAAACTAAC
CDS sequence (LotjaGi4g1v0362600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGATGCCGTACCAGCTTTACCGGTTGCCTTACCATGATTCCCTCAAATTGCTTGAGGCTGATATACAACACGC CAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGAGTGTTCTTCAAATGAAATTGGTTTATAGTCACTTGGCTC CTCTCTTTCTATTGTTCTTAGAGTGGATGGATTGTTCTTGTGCATACTTTCTTCACAGATATCTCAGCCTCTTCCACATA CTTATTTACAAGGTACATAATGATGGTAGATCAAGTATAACTTCTCATGGAAGAAAGGCAACCATTCAGGACTTTTATGC CGTTATACTGCCATCCCTCCAGCGGCTTCATGGCAGCTTGGAGAAGTTGGAGATTTGCATGAAAGGGTCCTCTACCATGG AGTTCTCAAGTTATGGCAGGAAGATGATTGAAGGAAATGGGAAATTAATCAATGTCGATTTGGAAAGAGAAGATGAATGT GGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTATGTGTATCAAATGCTACCGCAAGTG GAACACGCGATCGGAGTCTTGTCCATTTTGTCGTGGTAGCTTAAGGAGAGTTAATTCTGAGGATCTATGGGTACTCACTT GTAATGAAGATGTTGTTGATGCTGAAACAGTTTCCAGGGAGGACTTGCTGCGTTTTTACCTTTATATCAATAGCCTACCT AAGGATTATCCAGATGCACTTTTCTTAATGTATTATGAATACTTGATTTGA
Protein sequence (LotjaGi4g1v0362600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMMPYQLYRLPYHDSLKLLEADIQHANALAAAIPRAKGGSVLQMKLVYSHLAPLFLLFLEWMDCSCAYFLHRYLSLFHI LIYKVHNDGRSSITSHGRKATIQDFYAVILPSLQRLHGSLEKLEICMKGSSTMEFSSYGRKMIEGNGKLINVDLEREDEC GICLEPCTKMVLPNCCHAMCIKCYRKWNTRSESCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSREDLLRFYLYINSLP KDYPDALFLMYYEYLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| PANTHER | 8 | 256 | 249 | 5.6E-134 | – | |
| PANTHER | 8 | 256 | 249 | 5.6E-134 | – | |
| Phobius | 52 | 71 | 20 | - | – | |
| Phobius | 72 | 256 | 185 | - | – | |
| Gene3D | 136 | 209 | 74 | 1.7E-12 | ||
| SUPERFAMILY | 151 | 202 | 52 | 1.04E-11 | – | |
| Pfam | 158 | 198 | 41 | 2.4E-7 | ||
| SMART | 160 | 197 | 38 | 8.9E-4 | ||
| ProSiteProfiles | 160 | 198 | 39 | 11.766 | ||
| ProSitePatterns | 175 | 184 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0362600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…