Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0376700 |
Transcript ID | LotjaGi4g1v0376700.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75572446..75577096) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGTTGAATGAAAAACCATTGGAGTGGGTAAAAGTTGAATGAAGTGTTGAACTGGAGAGAGAAGGTGATGTGGAGTTT TGGAAAGAGAAAAAGTGGTGTTGAATGTTGAAACCATTGTGGGTAGTCTTATGATGAAAAATGAGTTATCTAAATTAGTT TTAGAAAATGAATAATAATAATAATGCTGTAGAGATCTGAATGGCATATGGGTGGGGCAAGATATTTGATGGATTGATTC TGATTGAGCAATTGGCTACGCTAGGCTGGCGCCAAACGGCACATTCACAAAAGAAAAGAGCGGACTCTAAACAAATATCC AATCCCCTTTTAGTTTTTCAAATTACACACCGAACCGTCTCTCACACACTACTACTACTAGTAACTTCACACTTCACTCA CAATTCACAAATCAGAAATCAGAAACTGAAACTTCCCTCTCTCTCTTCTCTCGCTTTCTCCTCTCTCGAATTCTCAATCT CAATCGAAGATGAGAGAGATCATCAGCATTCACATTGGTCAAGCCGGGATCCAAGTCGGTAACTCCTGCTGGGAGCTTTA CTGTCTCGAACATGGCATCCAGCCTGACGGCATCATGCCTTCCGACTCCTCCTTCGGCGTCGTCGCTCACGACGCCTTCA ACACCTTCTTCAGCGAAACCGGCTCCGGTAAACACGTCCCTCGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGAC GAAGTCCGCGCCGGCACCTACCGCCAACTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTT CGCCAGAGGCCACTACACCGGTAACACACTCTCAAACACCAGATCGCGCCAGATCTAGATTTCATTTCTCCAAAACCCTA ACCCTAACCCTAACCCCTGTTTTTGTCTGCAGTTGGCAAGGAAATCGTAGATCTGTGCCTCGATCGTGTCAGAAAGCTCG CTGATAACTGTACCGGACTCCAAGGCTTCCTCGTCTTCAACGCCGTCGGTGGAGGAACCGGCTCCGGTTTGGGTTCTCTC TTGCTCGAACGGTTATCCGTCGATTACGGCAAGAAATCCAAACTAGGTTTCACCATCTACCCTTCCCCTCAGGTATACAC GCAATTTTCACTCCTAATTGCAGAAAACTTCAACAATTTTGCTTCATCTAGGGTTAGGAAAGAGAGAATTAGTCAAATCT GAATCTGAACGTGAATTGCAGGTTTCCACGGCGGTTGTGGAGCCTTACAACAGCGTTCTCTCGACGCATTCGCTCCTTGA GCACACTGATGTGGCTGTGCTGTTGGACAATGAAGCGATCTATGACATTTGCAGGAGATCTCTTGATATTGAGAGGCCTA CGTACACGAACTTGAACAGGCTTATCTCTCAGATCATTTCCTCATTGACTACCTCTTTGAGGTTTGATGGTGCGATCAAT GTAGATATCACTGAGTTTCAGACTAACCTTGTGCCTTATCCTCGTATCCATTTCATGCTTTCGTCCTATGCGCCGGTTAT CTCTGCTGCTAAGGCCTACCATGAGCAGCTTTCGGTGCCTGAGATCACCAATGCGGTGTTTGAGCCTTCCAGCATGATGG CGAAGTGTGATCCTAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTACAGGGGAGATGTTGTTCCGAAGGATGTCAAT GCTGCTGTTGCCACCATCAAAACTAAGAGGACTGTTCAGTTTGTTGATTGGTAAGCATTCATGAACAATTGAATTGTATA TTGTAATGGCGAGTGGTATTGCTTTGTGTTGTTTGGATATGTTTGTAGAAGATTTGTATAAGTAGTGATAAGCAAACTTG TTGGTAAGATGTTGTATAGTATATCTGCATGTTTGGAAACTTGTTCAGGTACCTTGATTGAGCATTAGATCCCGCTTCAA AGCACAAGCTACACGGCTTAGCTTCTATGAAGTTTATGTGATTCTGAGGCTTCATAGCCAAAATCTATTTGATTTGGATT GCAATGGTCTTTTGATTGACATGATTAATAATATGCAATTATTACTTTATCTTATTTATGTAGCTGATAGTAAGTATTTG GATATGTATGAAGAAAATTCATAGAAGCAAGGATAATGAAAGTAGATCAGATGTAGGATAGTTTGATAGTTAGAGGTAGA AAAGTGAATAAGGAAAACAGCAGCTGAATTATTTTGTATTTGGATAATCAGACATGATTTGTGATATGCTTATTTCGTTA TTTGATAAATGTAGCTTACTTTACATAATGGAAAGAGCTGTTGTTGTTTGTAACATGTGTTCTGACATGATAAAATCTCT AATGATAGGTGCCCAACTGGTTTCAAATGTGGTATCAACTACCAGCCTCCTTCAGTTGTACCTGGTGGTGACCTTGCTAA GGTGCAGCGGGCTGTTTGCATGATCAGTAACAACACTGCAGTTGCTGAGGTGTTCTCTCGCATTGACCACAAGTTTGATC TCATGTATGCCAAGAGGGCCTTTGTCCACTGGTATGTTGGTGAGGGTATGGAAGAAGGGGAGTTCTCAGAAGCTCGTGAA GATCTTGCTGCTCTTGAGAAAGATTATGAGGAAGTTGGTGCTGAGGGAGCAGATGATGAAGAGGAAGGAGAGGACTACTG ATTGCTTTAATATTTTGTGACTCAAGACATTTTCCTTATAATTGTTTCAAGTAAGGAGGGCAATGCTTCGTTACATTGCC CTCCACCCGTTTTGTTCTTTTTTGTTCATGTGTGATATAGTTCCCATTATTCAATCTGTGAAATGGCCAACATTATGTTT CTGATTTAGGATATGCTGTTTGCGACTTCAGTTGTGTTCATGTCAAAAGTTGATTTTCGATAAGTTTACTCAATTTCTGC TAGATTTACGATTTGATTATCTCAATTACTCAAGATGTACCGTGCAAAACTTGCTACCCCCTCCCCAATATGCAATTTCT TGTTGTTCAGGGAATCAAGTTCGGCTAGATGCAATTTTTATGCACTTGGTGCCCATTTGGATCCAGTTCACCTGAACCAA TTATGGCTTGTAACTTGTCATTTTACATATCTTCATTTTTGAATCGATCGGTGATATGGAATGGATTCAATATCTTGTGG ATATGTATGGATAGGTCATAGGGAAATAAGAATGTCCTCCACTTCTTTCTGATTGCTTGTCAAATTGCAAGTCATATTTT CTTTGTTATTGCCTTGTAGCATTTTCTTTCTATTAGAACACAGCACTCACAATTAATGGATATCAAAGAAAGTGTAGTTA AAGTAGTACCCCCGTTCATCTGTGCTCCAGCCGCTTCAGAGATCCTCTAACTTCTTCAACTTAACTGGGAAGTTTGTCTC CATCATGCCCCAAGAGTGTGCAATGCAGTGGGCATATAAATTGGCCAAATTGGCTTACCTGTAAAGTTCTCAGTACATCT CACTCACAGTAGGACAATTTTTTTATTTTAAAATAAAATTGGAAATAACTTGTCATGTTGGATGTCATGCTTTAAGTTGA ATAAAAAATGTACTAGAATTTAATATTGATACAGTGACAGTTAAGCAGAGACGGGACCAGAAAAAATGAGTAAGGGGACA AAAATTTAAAACACTACATAAAATCAAGAATGACTTATTGAATAAGACAATATAAAACTATTTCCTTGCTGTTCTCCATT AACTACAACAATTTCTCAACTTCCTTTGTCATGTCAATTACACATCCTTTTTCGGCACTTTTGTTTATTCATTTGTGTCC TGCAACTTGACTATTTGGTCCTCATAATTGAAGGCCATATATATTTCATTCCAATCCACCAACACCTTACCCAATGTCTC CAGCCAAGTCACTCCTATTCATATTCACTCCTCCAAGATCCAACACATATACATTTATGGTAATATGGATTTCTCTAATT GCATTATTAAACCAAAACACTCACCTTTTGTCACAACTCTATGATCATCACCGGGGCCACTCTTACCTTTTTAGAAAAAC TCACCTCTATATCCAAGGCTGAAGTGATATATGAGAATTGATGAACTTGAGACTTACTCCATTTTCAACTGATACAACTA AAAACGCTCATTTAATTCTTTCTAATATACTCTAAATTTTTGCCTTTGAAAGAACATTGTTTGAAATAATATCCCCAAGG TATTCAATTATAGAGCTTTTTGTTGTATTTAATTGCTTTTGTAATTTTGAACCAGGTGAGATTACTATAGGCGGTAAAGT TCTCCTTATCAAATATTTAAGGTAGTATTCACAGAGACTAAAACCCGAAACATCTGATTAAGCTAGACCGACCCGGCAAC CCCGAAATAGTTAATCTATTGTTTGTTGGTGGTTGTATTCTTACAACATAGTGGAATTTTATGTAAAAATATCCATCAAC TAGTTATATTAAATAATAATCTCTATCAACTAGCTTTTTTTATTTGATCAACTAGCTTTTGAGTTATTTGTTGTAGATGA TGGGGCCATGCCAGTGTGTGCTGAAATCACGTTCGTTCCTTGACGGAAAATGACTACTTGTGTTGTTTACAACAGAATGA AAAAAAAAAAAAAAAAAAAAAGAAATTCCGTTGCCGGGACTTGAACCCGGGTCTCTCGGGTGAGAGCCGAGTATCCTGAC CAACTAGACTA
CDS sequence (LotjaGi4g1v0376700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAGATCATCAGCATTCACATTGGTCAAGCCGGGATCCAAGTCGGTAACTCCTGCTGGGAGCTTTACTGTCTCGA ACATGGCATCCAGCCTGACGGCATCATGCCTTCCGACTCCTCCTTCGGCGTCGTCGCTCACGACGCCTTCAACACCTTCT TCAGCGAAACCGGCTCCGGTAAACACGTCCCTCGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGACGAAGTCCGC GCCGGCACCTACCGCCAACTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTTCGCCAGAGG CCACTACACCGTTGGCAAGGAAATCGTAGATCTGTGCCTCGATCGTGTCAGAAAGCTCGCTGATAACTGTACCGGACTCC AAGGCTTCCTCGTCTTCAACGCCGTCGGTGGAGGAACCGGCTCCGGTTTGGGTTCTCTCTTGCTCGAACGGTTATCCGTC GATTACGGCAAGAAATCCAAACTAGGTTTCACCATCTACCCTTCCCCTCAGGTTTCCACGGCGGTTGTGGAGCCTTACAA CAGCGTTCTCTCGACGCATTCGCTCCTTGAGCACACTGATGTGGCTGTGCTGTTGGACAATGAAGCGATCTATGACATTT GCAGGAGATCTCTTGATATTGAGAGGCCTACGTACACGAACTTGAACAGGCTTATCTCTCAGATCATTTCCTCATTGACT ACCTCTTTGAGGTTTGATGGTGCGATCAATGTAGATATCACTGAGTTTCAGACTAACCTTGTGCCTTATCCTCGTATCCA TTTCATGCTTTCGTCCTATGCGCCGGTTATCTCTGCTGCTAAGGCCTACCATGAGCAGCTTTCGGTGCCTGAGATCACCA ATGCGGTGTTTGAGCCTTCCAGCATGATGGCGAAGTGTGATCCTAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTAC AGGGGAGATGTTGTTCCGAAGGATGTCAATGCTGCTGTTGCCACCATCAAAACTAAGAGGACTGTTCAGTTTGTTGATTG GTGCCCAACTGGTTTCAAATGTGGTATCAACTACCAGCCTCCTTCAGTTGTACCTGGTGGTGACCTTGCTAAGGTGCAGC GGGCTGTTTGCATGATCAGTAACAACACTGCAGTTGCTGAGGTGTTCTCTCGCATTGACCACAAGTTTGATCTCATGTAT GCCAAGAGGGCCTTTGTCCACTGGTATGTTGGTGAGGGTATGGAAGAAGGGGAGTTCTCAGAAGCTCGTGAAGATCTTGC TGCTCTTGAGAAAGATTATGAGGAAGTTGGTGCTGAGGGAGCAGATGATGAAGAGGAAGGAGAGGACTACTGA
Protein sequence (LotjaGi4g1v0376700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVR AGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMY RGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMY AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEEEGEDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 448 | 448 | 0.0 | – | |
Gene3D | 1 | 269 | 269 | 3.1E-125 | ||
SUPERFAMILY | 1 | 245 | 245 | 6.67E-96 | ||
ProSitePatterns | 1 | 4 | 4 | - | ||
PANTHER | 1 | 448 | 448 | 0.0 | ||
CDD | 2 | 436 | 435 | 0.0 | – | |
Pfam | 3 | 214 | 212 | 8.9E-68 | ||
PRINTS | 10 | 30 | 21 | 1.2E-91 | ||
PRINTS | 18 | 33 | 16 | 1.0E-117 | ||
PRINTS | 46 | 59 | 14 | 1.0E-117 | ||
SMART | 50 | 247 | 198 | 2.8E-73 | ||
PRINTS | 54 | 73 | 20 | 1.2E-91 | ||
PRINTS | 89 | 102 | 14 | 1.0E-117 | ||
PRINTS | 96 | 107 | 12 | 1.2E-91 | ||
PRINTS | 109 | 133 | 25 | 1.2E-91 | ||
PRINTS | 121 | 129 | 9 | 1.0E-117 | ||
PRINTS | 135 | 153 | 19 | 1.2E-91 | ||
ProSitePatterns | 143 | 149 | 7 | - | ||
PRINTS | 149 | 161 | 13 | 1.0E-117 | ||
PRINTS | 154 | 175 | 22 | 1.2E-91 | ||
PRINTS | 162 | 173 | 12 | 1.0E-117 | ||
PRINTS | 179 | 192 | 14 | 1.2E-91 | ||
PRINTS | 193 | 213 | 21 | 1.2E-91 | ||
PRINTS | 215 | 227 | 13 | 1.0E-117 | ||
SUPERFAMILY | 247 | 436 | 190 | 3.05E-85 | ||
SMART | 249 | 394 | 146 | 1.5E-54 | ||
Pfam | 264 | 393 | 130 | 1.3E-50 | ||
Gene3D | 270 | 384 | 115 | 1.4E-64 | ||
PRINTS | 275 | 290 | 16 | 1.0E-117 | ||
PRINTS | 322 | 343 | 22 | 1.0E-117 | ||
PRINTS | 348 | 361 | 14 | 1.0E-117 | ||
PRINTS | 361 | 380 | 20 | 1.0E-117 | ||
PRINTS | 381 | 409 | 29 | 1.2E-91 | ||
Gene3D | 385 | 438 | 54 | 3.1E-33 | ||
PRINTS | 386 | 402 | 17 | 1.0E-117 | ||
Coils | 419 | 446 | 28 | - | – | |
PRINTS | 423 | 439 | 17 | 1.0E-117 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi4g1v0376700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…