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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0376700 |
| Transcript ID | LotjaGi4g1v0376700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75574456..75576607) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGAGATCATCAGCATTCACATTGGTCAAGCCGGGATCCAAGTCGGTAACTCCTGCTGGGAGCTTTACTGTCTCGA ACATGGCATCCAGCCTGACGGCATCATGCCTTCCGACTCCTCCTTCGGCGTCGTCGCTCACGACGCCTTCAACACCTTCT TCAGCGAAACCGGCTCCGGTAAACACGTCCCTCGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGACGAAGTCCGC GCCGGCACCTACCGCCAACTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTTCGCCAGAGG CCACTACACCGGTAACACACTCTCAAACACCAGATCGCGCCAGATCTAGATTTCATTTCTCCAAAACCCTAACCCTAACC CTAACCCCTGTTTTTGTCTGCAGTTGGCAAGGAAATCGTAGATCTGTGCCTCGATCGTGTCAGAAAGCTCGCTGATAACT GTACCGGACTCCAAGGCTTCCTCGTCTTCAACGCCGTCGGTGGAGGAACCGGCTCCGGTTTGGGTTCTCTCTTGCTCGAA CGGTTATCCGTCGATTACGGCAAGAAATCCAAACTAGGTTTCACCATCTACCCTTCCCCTCAGGTATACACGCAATTTTC ACTCCTAATTGCAGAAAACTTCAACAATTTTGCTTCATCTAGGGTTAGGAAAGAGAGAATTAGTCAAATCTGAATCTGAA CGTGAATTGCAGGTTTCCACGGCGGTTGTGGAGCCTTACAACAGCGTTCTCTCGACGCATTCGCTCCTTGAGCACACTGA TGTGGCTGTGCTGTTGGACAATGAAGCGATCTATGACATTTGCAGGAGATCTCTTGATATTGAGAGGCCTACGTACACGA ACTTGAACAGGCTTATCTCTCAGATCATTTCCTCATTGACTACCTCTTTGAGGTTTGATGGTGCGATCAATGTAGATATC ACTGAGTTTCAGACTAACCTTGTGCCTTATCCTCGTATCCATTTCATGCTTTCGTCCTATGCGCCGGTTATCTCTGCTGC TAAGGCCTACCATGAGCAGCTTTCGGTGCCTGAGATCACCAATGCGGTGTTTGAGCCTTCCAGCATGATGGCGAAGTGTG ATCCTAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTACAGGGGAGATGTTGTTCCGAAGGATGTCAATGCTGCTGTT GCCACCATCAAAACTAAGAGGACTGTTCAGTTTGTTGATTGGTAAGCATTCATGAACAATTGAATTGTATATTGTAATGG CGAGTGGTATTGCTTTGTGTTGTTTGGATATGTTTGTAGAAGATTTGTATAAGTAGTGATAAGCAAACTTGTTGGTAAGA TGTTGTATAGTATATCTGCATGTTTGGAAACTTGTTCAGGTACCTTGATTGAGCATTAGATCCCGCTTCAAAGCACAAGC TACACGGCTTAGCTTCTATGAAGTTTATGTGATTCTGAGGCTTCATAGCCAAAATCTATTTGATTTGGATTGCAATGGTC TTTTGATTGACATGATTAATAATATGCAATTATTACTTTATCTTATTTATGTAGCTGATAGTAAGTATTTGGATATGTAT GAAGAAAATTCATAGAAGCAAGGATAATGAAAGTAGATCAGATGTAGGATAGTTTGATAGTTAGAGGTAGAAAAGTGAAT AAGGAAAACAGCAGCTGAATTATTTTGTATTTGGATAATCAGACATGATTTGTGATATGCTTATTTCGTTATTTGATAAA TGTAGCTTACTTTACATAATGGAAAGAGCTGTTGTTGTTTGTAACATGTGTTCTGACATGATAAAATCTCTAATGATAGG TGCCCAACTGGTTTCAAATGTGGTATCAACTACCAGCCTCCTTCAGTTGTACCTGGTGGTGACCTTGCTAAGGTGCAGCG GGCTGTTTGCATGATCAGTAACAACACTGCAGTTGCTGAGGTGTTCTCTCGCATTGACCACAAGTTTGATCTCATGTATG CCAAGAGGGCCTTTGTCCACTGGTATGTTGGTGAGGGTATGGAAGAAGGGGAGTTCTCAGAAGCTCGTGAAGATCTTGCT GCTCTTGAGAAAGATTATGAGGAAGTTGGTGCTGAGGGAGCAGATGATGAAGAGGAAGGAGAGGACTACTGA
CDS sequence (LotjaGi4g1v0376700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAGATCATCAGCATTCACATTGGTCAAGCCGGGATCCAAGTCGGTAACTCCTGCTGGGAGCTTTACTGTCTCGA ACATGGCATCCAGCCTGACGGCATCATGCCTTCCGACTCCTCCTTCGGCGTCGTCGCTCACGACGCCTTCAACACCTTCT TCAGCGAAACCGGCTCCGGTAAACACGTCCCTCGCGCCGTCTTCGTAGATCTCGAACCCACCGTCATCGACGAAGTCCGC GCCGGCACCTACCGCCAACTCTTCCACCCCGAACAACTCATCTCCGGCAAGGAAGACGCCGCCAACAACTTCGCCAGAGG CCACTACACCGTTGGCAAGGAAATCGTAGATCTGTGCCTCGATCGTGTCAGAAAGCTCGCTGATAACTGTACCGGACTCC AAGGCTTCCTCGTCTTCAACGCCGTCGGTGGAGGAACCGGCTCCGGTTTGGGTTCTCTCTTGCTCGAACGGTTATCCGTC GATTACGGCAAGAAATCCAAACTAGGTTTCACCATCTACCCTTCCCCTCAGGTTTCCACGGCGGTTGTGGAGCCTTACAA CAGCGTTCTCTCGACGCATTCGCTCCTTGAGCACACTGATGTGGCTGTGCTGTTGGACAATGAAGCGATCTATGACATTT GCAGGAGATCTCTTGATATTGAGAGGCCTACGTACACGAACTTGAACAGGCTTATCTCTCAGATCATTTCCTCATTGACT ACCTCTTTGAGGTTTGATGGTGCGATCAATGTAGATATCACTGAGTTTCAGACTAACCTTGTGCCTTATCCTCGTATCCA TTTCATGCTTTCGTCCTATGCGCCGGTTATCTCTGCTGCTAAGGCCTACCATGAGCAGCTTTCGGTGCCTGAGATCACCA ATGCGGTGTTTGAGCCTTCCAGCATGATGGCGAAGTGTGATCCTAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTAC AGGGGAGATGTTGTTCCGAAGGATGTCAATGCTGCTGTTGCCACCATCAAAACTAAGAGGACTGTGCAGCGGGCTGTTTG CATGATCAGTAACAACACTGCAGTTGCTGAGGTGTTCTCTCGCATTGACCACAAGTTTGATCTCATGTATGCCAAGAGGG CCTTTGTCCACTGGTATGTTGGTGAGGGTATGGAAGAAGGGGAGTTCTCAGAAGCTCGTGAAGATCTTGCTGCTCTTGAG AAAGATTATGAGGAAGTTGGTGCTGAGGGAGCAGATGATGAAGAGGAAGGAGAGGACTACTGA
Protein sequence (LotjaGi4g1v0376700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGIMPSDSSFGVVAHDAFNTFFSETGSGKHVPRAVFVDLEPTVIDEVR AGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV DYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLT TSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMY RGDVVPKDVNAAVATIKTKRTVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE KDYEEVGAEGADDEEEGEDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSitePatterns | 1 | 4 | 4 | - | ||
| SUPERFAMILY | 1 | 245 | 245 | 5.49E-96 | ||
| PANTHER | 1 | 343 | 343 | 2.7E-278 | – | |
| PANTHER | 1 | 343 | 343 | 2.7E-278 | ||
| Gene3D | 1 | 269 | 269 | 2.5E-125 | ||
| CDD | 2 | 406 | 405 | 0.0 | – | |
| Pfam | 3 | 214 | 212 | 7.5E-68 | ||
| PRINTS | 10 | 30 | 21 | 5.1E-92 | ||
| PRINTS | 18 | 33 | 16 | 1.9E-81 | ||
| PRINTS | 46 | 59 | 14 | 1.9E-81 | ||
| SMART | 50 | 247 | 198 | 2.8E-73 | ||
| PRINTS | 54 | 73 | 20 | 5.1E-92 | ||
| PRINTS | 89 | 102 | 14 | 1.9E-81 | ||
| PRINTS | 96 | 107 | 12 | 5.1E-92 | ||
| PRINTS | 109 | 133 | 25 | 5.1E-92 | ||
| PRINTS | 121 | 129 | 9 | 1.9E-81 | ||
| PRINTS | 135 | 153 | 19 | 5.1E-92 | ||
| ProSitePatterns | 143 | 149 | 7 | - | ||
| PRINTS | 149 | 161 | 13 | 1.9E-81 | ||
| PRINTS | 154 | 175 | 22 | 5.1E-92 | ||
| PRINTS | 162 | 173 | 12 | 1.9E-81 | ||
| PRINTS | 179 | 192 | 14 | 5.1E-92 | ||
| PRINTS | 193 | 213 | 21 | 5.1E-92 | ||
| PRINTS | 215 | 227 | 13 | 1.9E-81 | ||
| SUPERFAMILY | 247 | 406 | 160 | 1.77E-67 | ||
| SMART | 249 | 364 | 116 | 3.4E-32 | ||
| Pfam | 264 | 343 | 80 | 2.6E-29 | ||
| Gene3D | 270 | 344 | 75 | 1.8E-35 | ||
| PRINTS | 275 | 290 | 16 | 1.9E-81 | ||
| PRINTS | 331 | 350 | 20 | 1.9E-81 | ||
| PANTHER | 342 | 418 | 77 | 2.7E-278 | – | |
| PANTHER | 342 | 418 | 77 | 2.7E-278 | ||
| PRINTS | 351 | 379 | 29 | 5.1E-92 | ||
| Gene3D | 355 | 408 | 54 | 2.9E-33 | ||
| PRINTS | 356 | 372 | 17 | 1.9E-81 | ||
| Coils | 389 | 416 | 28 | - | – | |
| PRINTS | 393 | 409 | 17 | 1.9E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi4g1v0376700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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