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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0393900 |
| Transcript ID | LotjaGi4g1v0393900.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma membrane ATPase; TAIR: AT1G10130.1 endoplasmic reticulum-type calcium-transporting ATPase 3; Swiss-Prot: sp|P22036|ATMB_SALTY Magnesium-transporting ATPase, P-type 1; TrEMBL-Plants: tr|A0A0R0JX32|A0A0R0JX32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77223131..77227958) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTAGGATTTCTGCGGCGCCTCATCTATGAAAGTATGCTTCAGAACCATAGCTTCTCTTTTCTACCCTCTTTCCTTCC ATTTTCTCCCTCTTATGTACTTCTCTCCAGATAGAAGTGTGTGTTTGCATAACTGGTGAATGTAACGTGAACGAACTTTC ATCTCAATACATAAGAAGAATATCGTTTATTTATTTATCTCGTAACTGTTTTCATTGCTTTCAACGGGTATCCAAACATA TATTTAGCAGTTACTATCATAGTATGTTTTTTTTATGTGGGTTGAGCTCAATTGCAGGGAAACCTGATGGGGGCTCACGA ACTGAAGAGGAAGAGAAAGTCTACTCTTGGCTATATACCTTGGCCCAGTCTGACAAAAACTTGGTCTTTGAGTATGTTAG GTCCACAGAAAGAGGCAAGTTTCTGTATTCTGCAGTACTTTTACAATTACACATTGATACCTTTCAAAATTTATGGACAC AAAATGTGGTCCTAAACGCATGTTTCATGTGCTACTGGCACTAAAAGCAAATGAATTTGAATCCTCTCTTGTGACACTAC ATTGTCACGATTAATAGCATGTTACGTTTGTTTCCACTGTGAAATTCTGTAGAATCAATTCTTGTTAGAAACAAGTCTTA ACGTGAGTTAACGTGTCTTCAATTATGTGCAATTCGTGAAGCCAAACATGTTATAAGATTGTGTATCTTTCTCTGTTAAC AATGTTCTTCAATTTCTGTGTAGGCTTAACATTCACTGAAGCTGAGAGCAGGCTGCAAGAAAATGGTCCAAACGTTCCAT TTGATTATTCTTTTCCAAGCTGGTGGCATTTTCTATGGAAAGCTCTTTTCCACGCTTTCAACATGATTCTCATTGTTTTA TCTGCTCTGTCATTCATCACCTGTGACTATCCAAATGGATCCATCATGCTCATATTGGTTTTCATCAGTGTCTCCCTCCG TTTCTATCAGGTATGACTATGAATTTCTACATTACTTGGTTCAATTGAATGAAGAAATATTTCTCTTCCCTTTCCCTCCT CTTATCTTGCACCTTTACCGTGGTTCATAGGAATATAGCAGCTCGAAAGCAGCTAAGAGGCTTTCAGAATTTTTGAGATG CCCGGTGCGAGTTCAAAGATGTGCCGGTAGAGTTGTGCAGACAGAATTGAAGGTTCAAGTTGATCACAGGGATGTAGTTC CTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCAGGGGATATCAGATTGTTATCTTCAACACATCTTGTTGTA AGGTATGTCAACTGAAAATCTGGTGGTTTTATTGATGATTTGAATATCAGATGGTGATTTGATACCTTTTTAACAGCCAG GCCTCATTAACTGGGGAGTCTTGGACAACGGAAAAAACTGCTGATGTTAGAGAAGATCACAGCACACCTTTACTAGATTT AAAGAACATCTGCTTTATGGTTAGTAATTCAAACCCCCTTCCTTGTTTTGTTTCAATGGAATAAGGTTTCAAATTGGAGT CGCGGCCGTGAATCTTGATACTGTGGAAAATTAAGGACACATGAGGCTGATGCGACTACCATCGCGATGCAGTCATGGAG ACAGTTAGGATTCAATTGCAAGATTTGTAACTTGAGTCCCACATTGGAAGTATGACATTCTAATGTGGGGTTTACAAGCC TTGGGCTCTCCAACAGTTGGCTTTTGTGGTATGGTTCTCGCCTTCTCGGAAGGTTTTTATCAATTGATATCGGTGCCTTC CACCATGTCTCTCGGCTGCAAACGAGCAGTGCGGGTGGTGATGTCTGCATTGCGGCGTTTGCTCGGCCCTAGTCAAAGGG CTATGTATGGTTCTCCCTGGGTTTTTATCAGAGACCTCCAAAATCATGAGCAATTTAAAACCATGCAATGAAAGTTATAT CTTCAGTTTAGAGTTACATCTCACAAAGTACCAAACAGATTCAGTTTATAATTTTGTAATTTTCCATACCTTTATGATAT TTTGGCCTTAAAACATATTGAATTCCCAAACAGATATTGTCAGCTTAATAACAGAGAACTTTTCTTGGAAGTGACTAGCT ATTATGAACATTGCAGGGTACAAACGTGGTATCAGGTACTGGAACAGGCTTAGTTATTTCAACTGGATCCAATACTTACT TGAGCACCATGTTTTCCAAGGTTGGGAAGAAGAAGCCACAAGATGACTTTGAAAAGGGTCTCAAATGGATATTTTACATG CTTATTTCTGTTATGCTAGTGGTTGTTACAGTCATGTTTGTGACAGAATACACATCATCTCTTGATTTGAGCAAAAGTAT TCTCTTTGCGATCACAGTAGCATCTGCACTCAATCCTCAGATGCTACCCCTCATCATCAACACATGCCTTGCAAAAGGAG CCCTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGCTTAACAGCTATACGCGAGATGGGATCAATGTGAGTACAAATT CACATTAAAATCAACTGATTGATGATTTAGTGCATGTTTCGTAATTATTCTACAATTGATTCGAAAGTCAGAATCAATTC TGGTGAGAAACTTCTGTAAGTAGCTTCTGAGATCCATATAATTGATTCTGAGAAAAAGATCCTAGCATTCTATTATCTTG ATGCTTGGGTCTAAATTAGGAGCAAACTTCTAAATAGATATGCTAGAATCTAGTTTAACAATAACTGCATCATCAACAAT GAGAACTTAGGGTCCAAAAACTTGCAAGGCATGTGATGAGTGGTTTGTTTTGCTTCAAGTATGCATCTTTTTAGCAAACT CTTCTACTATGCACTTACATTTTATAGTGTTGCAGGGATATCCTTTGTATTGACAAGACAGGCACCCTCACAATGAATCA TGCAATCATGGTTAATCATCTTGACTGTAGAGGTTTACCCCAAGAAAAAGTTCTGCGCTTTGCTTTCCTTAGTTCTTACT TCAAGACTGATCATAATTTTCCTTTGGATGATGCAATCATGGCACATGTATATTCAAATGGATTCAGATTTCAACCATCC AAGTGGAGGAAGGTAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACATGCA CTCCCAGTTCTTTGGCAGGTACATGGTAACAAAAGGAGCATTGGAGGAAGTCATGAGAGTTTGTTCTTTTATTGAGAATT TTGATAAAGATGGAATTTCCACCTTCTCTTTAGATGACTACCAGAGGATTTTGAATCTGTCTGAAGAATTGAGCAATGAA GGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTGGAAATGGTGAGTCTTTTCCAAATTAATGTCTTCTTACCTTCTTT TCAACTTATCATTATTTTCTTTCTTTTCATGCCAATGACACTCACTTTGCATATCAGATAGCTTAACAAGATTAGGATCA CCTAAGCGGTTGTGCCATTTTGCTATGAACCAACCGTGCCTGAAGCTCAAGCTGTTTATATTTCCAACACATCCCTCACC CTTTTCGCACAAGAACTCATTAATCGAACTCTACATCAAGTAGTCATAACCAGCTATCCTAAAATCTGAAGTTGTTTGCT GAAGACGCGATAATTGTTATATATTATAACATGTCTCACTATCAATTTCAATTTATGTGACATGCAGCAGCAAACATGTG AAACAAGTAATGGAATCAGGAGAGGTTGTGAGGATTTTGAAAGAGACATGATGTTTCTTGGCCTGGTAACATTTTTTGAC CCACCAAAGGACTCAGCAAAGCAAGCACTGTTTCAGTTGGCCAAGATGGGAGTTCAAGCAAAGGTTCTAACCGGTGACTC TCTCAGTTTGGCAACAAGGGTATGCAGAGAAGTTGGAATCAAAACCACACATGTAATCACAGGGCCAGAGCTAGAGCAAC TAGACCAAGACACTTTCCATGAAACTGTCCAAACAGCCACAGTGCTAGCTCGCCTCACCCCGACTCAGAAACTAAGAGTG GTTCAATCCTTGCAGACAAATGGAAACCACATTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTTGCTCTTGATGC TGCCCATGTAAGCATTTCAGTGGACTCAGGTGTTGCAATTGCCAAAGACATGGCAGATATAATCTTACTAGAGAAAGATC TCAATGTGCTAGTTGCAGGAGTGGAGCATGGAAGACTCACATTTGGGAACACAATGAAGTATGTGAAGATGTCAGTGATT GCCAACTTGGGAAGTGTGATTTCACTCCTCATAGCATCACTTTTACTCAGGAATGAGCCTTTAACAGCTAGGCAGCTTCT CACTCAGAATTTCATATACAGTGTGGGACAAATTGCTATCCCTTGGGACAAGATGGATGAAGAGTATGTGAAGACTCCTC ACAAATTTTCAGGGAAAGGGTTACCAATGTTCATATTGTGGAATGCACCTGTGTGCACTCTCTGTGATGTTGCAACACTC TTGTTTCTCTGGTTCTATTACAAGTCTTATGATGACTTGGAAGATAAATTCTTCCATTCAGCTTGGTTTATTGAGGGTCT TCTCATGCAGACACTCATCATCCATTTGATTAGGACAGAGAAAGTCCCTTTCATACAGGATGTTGCTTCTTGGCCAGTGA TTTGTTCCACTCTTGTGGTTTCTGCTATTGGAATTGCATTTCCATTCACACCCATTGGGAAGGTCATGGGATTCATTGTT TTACCTGTCTCATTTTTTGGGTTTTTGGTTGTTCTTTTTCTGGGATATTTCACTATTGGCCAGGTTGTTAAGAGACTTTA CATAATGGTTTATAAGAGATGGCTATGA
CDS sequence (LotjaGi4g1v0393900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAGAACCATAGCTTCTCTTTTCTACCCTCTTTCTCAATTGCAGGGAAACCTGATGGGGGCTCACGAACTGAAGA GGAAGAGAAAGTCTACTCTTGGCTATATACCTTGGCCCAGTCTGACAAAAACTTGGTCTTTGAGTATGTTAGGTCCACAG AAAGAGGCTTAACATTCACTGAAGCTGAGAGCAGGCTGCAAGAAAATGGTCCAAACGTTCCATTTGATTATTCTTTTCCA AGCTGGTGGCATTTTCTATGGAAAGCTCTTTTCCACGCTTTCAACATGATTCTCATTGTTTTATCTGCTCTGTCATTCAT CACCTGTGACTATCCAAATGGATCCATCATGCTCATATTGGTTTTCATCAGTGTCTCCCTCCGTTTCTATCAGGAATATA GCAGCTCGAAAGCAGCTAAGAGGCTTTCAGAATTTTTGAGATGCCCGGTGCGAGTTCAAAGATGTGCCGGTAGAGTTGTG CAGACAGAATTGAAGGTTCAAGTTGATCACAGGGATGTAGTTCCTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTT TCCAGGGGATATCAGATTGTTATCTTCAACACATCTTGTTGTAAGCCAGGCCTCATTAACTGGGGAGTCTTGGACAACGG AAAAAACTGCTGATGTTAGAGAAGATCACAGCACACCTTTACTAGATTTAAAGAACATCTGCTTTATGGGTACAAACGTG GTATCAGGTACTGGAACAGGCTTAGTTATTTCAACTGGATCCAATACTTACTTGAGCACCATGTTTTCCAAGGTTGGGAA GAAGAAGCCACAAGATGACTTTGAAAAGGTAGCATCTGCACTCAATCCTCAGATGCTACCCCTCATCATCAACACATGCC TTGCAAAAGGAGCCCTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGCTTAACAGCTATACGCGAGATGGGATCAATG GATATCCTTTGTATTGACAAGACAGGCACCCTCACAATGAATCATGCAATCATGGTTAATCATCTTGACTGTAGAGGTTT ACCCCAAGAAAAAGTTCTGCGCTTTGCTTTCCTTAGTTCTTACTTCAAGACTGATCATAATTTTCCTTTGGATGATGCAA TCATGGCACATGTATATTCAAATGGATTCAGATTTCAACCATCCAAGTGGAGGAAGGTAGATGAGATTCCTTTTGACTTC ATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACATGCACTCCCAGTTCTTTGGCAGGTACATGGTAACAAAAGG AGCATTGGAGGAAGTCATGAGAGTTTGTTCTTTTATTGAGAATTTTGATAAAGATGGAATTTCCACCTTCTCTTTAGATG ACTACCAGAGGATTTTGAATCTGTCTGAAGAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTATAAGGAAGCTG GAAATGCAGCAAACATGTGAAACAAGTAATGGAATCAGGAGAGGTTGTGAGGATTTTGAAAGAGACATGATGTTTCTTGG CCTGGTAACATTTTTTGACCCACCAAAGGACTCAGCAAAGCAAGCACTGTTTCAGTTGGCCAAGATGGGAGTTCAAGCAA AGGTTCTAACCGGTGACTCTCTCAGTTTGGCAACAAGGGTATGCAGAGAAGTTGGAATCAAAACCACACATGTAATCACA GGGCCAGAGCTAGAGCAACTAGACCAAGACACTTTCCATGAAACTGTCCAAACAGCCACAGTGCTAGCTCGCCTCACCCC GACTCAGAAACTAAGAGTGGTTCAATCCTTGCAGACAAATGGAAACCACATTGTTGGGTTCTTAGGAGATGGAGTGAATG ATTCACTTGCTCTTGATGCTGCCCATGTAAGCATTTCAGTGGACTCAGGTGTTGCAATTGCCAAAGACATGGCAGATATA ATCTTACTAGAGAAAGATCTCAATGTGCTAGTTGCAGGAGTGGAGCATGGAAGACTCACATTTGGGAACACAATGAAGTA TGTGAAGATGTCAGTGATTGCCAACTTGGGAAGTGTGATTTCACTCCTCATAGCATCACTTTTACTCAGGAATGAGCCTT TAACAGCTAGGCAGCTTCTCACTCAGAATTTCATATACAGTGTGGGACAAATTGCTATCCCTTGGGACAAGATGGATGAA GAGTATGTGAAGACTCCTCACAAATTTTCAGGGAAAGGGTTACCAATGTTCATATTGTGGAATGCACCTGTGTGCACTCT CTGTGATGTTGCAACACTCTTGTTTCTCTGGTTCTATTACAAGTCTTATGATGACTTGGAAGATAAATTCTTCCATTCAG CTTGGTTTATTGAGGGTCTTCTCATGCAGACACTCATCATCCATTTGATTAGGACAGAGAAAGTCCCTTTCATACAGGAT GTTGCTTCTTGGCCAGTGATTTGTTCCACTCTTGTGGTTTCTGCTATTGGAATTGCATTTCCATTCACACCCATTGGGAA GGTCATGGGATTCATTGTTTTACCTGTCTCATTTTTTGGGTTTTTGGTTGTTCTTTTTCTGGGATATTTCACTATTGGCC AGGTTGTTAAGAGACTTTACATAATGGTTTATAAGAGATGGCTATGA
Protein sequence (LotjaGi4g1v0393900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQNHSFSFLPSFSIAGKPDGGSRTEEEEKVYSWLYTLAQSDKNLVFEYVRSTERGLTFTEAESRLQENGPNVPFDYSFP SWWHFLWKALFHAFNMILIVLSALSFITCDYPNGSIMLILVFISVSLRFYQEYSSSKAAKRLSEFLRCPVRVQRCAGRVV QTELKVQVDHRDVVPGDIVIFEPGDLFPGDIRLLSSTHLVVSQASLTGESWTTEKTADVREDHSTPLLDLKNICFMGTNV VSGTGTGLVISTGSNTYLSTMFSKVGKKKPQDDFEKVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTAIREMGSM DILCIDKTGTLTMNHAIMVNHLDCRGLPQEKVLRFAFLSSYFKTDHNFPLDDAIMAHVYSNGFRFQPSKWRKVDEIPFDF IRRRVSVILETEDMHSQFFGRYMVTKGALEEVMRVCSFIENFDKDGISTFSLDDYQRILNLSEELSNEGLRVIAVAIRKL EMQQTCETSNGIRRGCEDFERDMMFLGLVTFFDPPKDSAKQALFQLAKMGVQAKVLTGDSLSLATRVCREVGIKTTHVIT GPELEQLDQDTFHETVQTATVLARLTPTQKLRVVQSLQTNGNHIVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADI ILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSVISLLIASLLLRNEPLTARQLLTQNFIYSVGQIAIPWDKMDE EYVKTPHKFSGKGLPMFILWNAPVCTLCDVATLLFLWFYYKSYDDLEDKFFHSAWFIEGLLMQTLIIHLIRTEKVPFIQD VASWPVICSTLVVSAIGIAFPFTPIGKVMGFIVLPVSFFGFLVVLFLGYFTIGQVVKRLYIMVYKRWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| PANTHER | 29 | 276 | 248 | 0.0 | – | |
| PANTHER | 29 | 276 | 248 | 0.0 | – | |
| SMART | 37 | 110 | 74 | 0.0016 | ||
| Pfam | 47 | 105 | 59 | 1.0E-10 | ||
| Gene3D | 51 | 268 | 218 | 3.3E-44 | – | |
| SUPERFAMILY | 52 | 865 | 814 | 1.24E-66 | ||
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 85 | 107 | 23 | - | – | |
| Gene3D | 88 | 270 | 183 | 3.3E-44 | – | |
| Phobius | 108 | 113 | 6 | - | – | |
| Phobius | 114 | 131 | 18 | - | – | |
| TMHMM | 114 | 131 | 18 | - | – | |
| Phobius | 132 | 666 | 535 | - | – | |
| Pfam | 159 | 303 | 145 | 1.1E-22 | – | |
| SUPERFAMILY | 159 | 263 | 105 | 3.66E-25 | ||
| PANTHER | 277 | 865 | 589 | 0.0 | – | |
| PANTHER | 277 | 865 | 589 | 0.0 | – | |
| TIGRFAM | 277 | 867 | 591 | 1.5E-189 | ||
| Gene3D | 279 | 320 | 42 | 6.7E-14 | – | |
| SFLD | 306 | 658 | 353 | 0.0 | – | |
| SFLD | 306 | 658 | 353 | 0.0 | – | |
| Pfam | 320 | 621 | 302 | 1.3E-14 | – | |
| SUPERFAMILY | 320 | 658 | 339 | 9.61E-33 | ||
| Gene3D | 321 | 333 | 13 | 6.7E-14 | ||
| ProSitePatterns | 326 | 332 | 7 | - | ||
| Gene3D | 388 | 514 | 127 | 7.3E-71 | ||
| Gene3D | 515 | 652 | 138 | 7.3E-71 | ||
| TIGRFAM | 575 | 687 | 113 | 5.8E-24 | ||
| Gene3D | 653 | 762 | 110 | 7.3E-71 | – | |
| PRINTS | 666 | 681 | 16 | 8.0E-25 | ||
| TMHMM | 667 | 689 | 23 | - | – | |
| Phobius | 667 | 689 | 23 | - | – | |
| Phobius | 690 | 736 | 47 | - | – | |
| PRINTS | 716 | 729 | 14 | 8.0E-25 | ||
| PRINTS | 736 | 752 | 17 | 8.0E-25 | ||
| Phobius | 737 | 760 | 24 | - | – | |
| TMHMM | 738 | 760 | 23 | - | – | |
| Phobius | 761 | 771 | 11 | - | – | |
| TMHMM | 770 | 789 | 20 | - | – | |
| PRINTS | 771 | 792 | 22 | 8.0E-25 | ||
| Phobius | 772 | 790 | 19 | - | – | |
| Phobius | 791 | 801 | 11 | - | – | |
| TMHMM | 801 | 823 | 23 | - | – | |
| Phobius | 802 | 822 | 21 | - | – | |
| PRINTS | 821 | 842 | 22 | 8.0E-25 | ||
| Phobius | 823 | 827 | 5 | - | – | |
| TMHMM | 828 | 850 | 23 | - | – | |
| Phobius | 828 | 852 | 25 | - | – | |
| Phobius | 853 | 868 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Magnesium-importing ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mg2+(out) -> ADP + phosphate + Mg2+(in). | ||
| Biological process | Magnesium ion transport | The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0393900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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