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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0415000 |
| Transcript ID | LotjaGi4g1v0415000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA helicase; TAIR: AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27; TrEMBL-Plants: tr|A0A0S3R740|A0A0S3R740_PHAAN RNA helicase; Found in the gene: LotjaGi4g1v0415000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79045648..79051406) extracted from Lotus japonicus Gifu genome v1.2.
CTGATTAATGTATGAGATATCTCAAATAAGAGGAATTCTCTTGAACTAGGGGGGCACGAGAAGGAAGAATAGGTGGAGAA GGGGTTTGGATCCTCTCATGTGTAAAAAAACTTGAGAGTGTCAAGTTTCATCATCTCACCATTAATTTTATTTTATTTTT CATTTATTATCTACACAAAAGTTAATGGTGAGATGGTAAAACTTGACACTCTCAAGTTTTTTTACACTTGAGAGGATCCC GGCTCGTGGAGTAGAGTTTGTTTTTGTTTTTTTTTGTCAAAAGAGTATGTTTAGAGTTAGAGTACCCTCACTCCCAAGAA TGAGGACCCTAAATTAAAGTACACAGGCTTCATAAAAATGAAAGCCCAATAAGAAGCCCACAAAAAGCCCTAGCTCATTC CTTCAACACTCAAGTTATCTCCCTCTAGTCGGAGGAGCAGCCGCACCGGAGAAAGAAAAAAACGCACCATTCATTCATAG GCGGCGATCACAGCCACCGGAAGCTCGTCGTGCACCACCCTCTATTACCGGTGTTCTGCCATCTCCGTTGAACGAAGCTT ACGAGACTGTGGCTGAGGCTGTGCAAAATCTAATCATGGCAGAACCAGAAGACAACCTTCAATCCTCACCTATGGTTGAA ACAGAGAACAACAAAAAGAAGAAGGAGAAGAAGAACAAGCACGACAAGAAAAGACCTCGAGATGTTGCTAACGAGGAGCA CGCAGAAGAAGAAGAGGAGCAGATTGGGAATAACAGTGACAGGGATGGAGAATCGTCAAAGAAGAAGAAGAAGAAGAAGC ATAAAGTGGAAGTGGAAGAGAGAAAGGAGAAGAACAATTCTGGGTCTGGAATTATGAGCACTGAATCCTTTGCTTCTCTG GAGTTGTCTGAACCTACTTCTAAGGCCATTGCAGACATGGGATTTCAGTTCATGACTCAGGTAAAATTCAACAATATTGA CAACCTTTGTGTGTTGAAATTTGAATGATCATAACTCTTTCATGCTTACCAGCCTTAATTAGTTTCAATTCCACTCATAA TTGTTGATTATGTATGAAAAATCTGTTTATATCATTCCGTCACTCATTCATTGATTCAAGAAGCAGCCCATTGAAGCATT GTATTAGAATTGACCTTATATGAGTATTATCAATGCAGATTCAAGCTAGAGCAATTCCACCACTTCTTACTGGAAAAGAT GTTCTTGGGGCTGCAAGGACCGGTTCTGGAAAAACTCTTGCATTTTTAATTCCTGCTGTGGAGCTTTTGTACAAGCTTAA GTTCACGCCTCGTGATGGAGCTGGTGTCGTTGTGATATGCCCAACTAGAGAGCTTGCAATGCAGGTATGTAGATATGCTG TCTTTTTGTTGTTTTGTGATTCTTACTGGTTTTGTTTTATGTAGTTCTTCTTACTCTTTGATTGGCCATTTCCCTTAGAC ACATGCGGTGGCCATGGAGCTTCTCAAGTATCATTCACTAACTCATGGAATTGTTATGGGAGGTTCAGCTAGAAGAGCTG AAGCTGAAACCATCGCCAGAGGGGTAAACCTATTGATAGCAACTCCTGGTCGGCTTCTAGATCACCTTCAAAATACAAAG AGGTTCATACATAATAACTTGAAGGTGAATATGGATTGTTTATACAACTCTCTCTCGCTCTTTTTTGCTTCATTGCGAAT ATTTCTGATAATGTCTTCAGGTTACCTTAACATAATAGTTTGAGTGTTTGATGGTTATTCATAATCTAAGCATTTCTGTA TAGTGAAGGAACTAGAACTTAGCGTCTTTTCAGATATCTGGTATATTAAAAGTGCATGGATGTATATGTAAGTGTAGATT CAAGGTGTTATCTTACTCTGAATTCTTGCTTGTTTTGGCAGTGCCTTATGATTGATGAAGCTGACAGGATATTAGAAGCA AACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGGTATCTATAATTTGTTTCTCCTTTTCTCCTCTCCC TTGCAGTCATGCTTGAGCCTGTAAAATTATAGTAGTGTCTTGGAATTACTTTTTTTCCAGCCCAATTGCCATATGTGATT GGATCATTGAACTGTAAAACACTGAAAAAAGGAGTTCAATTATTGTAAATTTGAAAGTTTTTTTTTTGAAAGGCAAATGT TAGTTGTTAGTAATGTTAGTAAATTAGTCCCTCCTCAGGGTTCGAACCCTGGACCCTTCACCCTTCGTCCCACCGAACCC TTATGTCCTCTGGCTCTTACCACTTGAGCTAACCCTCAGGGACATTGTAAATTTAGAAGTATTATCTCTTTCTTAACTAG AGGCGAAGTTCAATCATGAATTCTGCCTAAGTGTCTATTGACTTTGAATATCAGCAGCTGCTGGTAGTATCAATCAAGTT TCAACTGTTATTTAGAATACCACTTATTTCTCTCTTCATAATCTAAAAGAGTAAATCCTATAATTCCAACAGTTATAAGT TATGGTGGTTTTAAATATATCTATGGGCTTGGCTAATTGATCTGTTTCTCATTCAACAGAACAGGCAAACAGCTTTATTT TCAGCTACACAAACAAAGAAGGTATGTTCTTCATTTTCCATCCCTCGCCAACTTCTTTCCTGGAAATTTTTTTAATCTCT TTTTAATTTTTTATAATTATTATATAATTACCTTTTGTTTACTTTGGAAACACTAGACAATACATTACTTGAAACTTGAA AGTGAGTCTGGTTCTCCTCTCAATTTTATATTTCTTCTTGTATATTTATAGCTATTGCTCAATATACTAGATTTTATACT TGATGATGAACTGTTTACTTGAAAGTAAGCATAGGGGAGACGAAAGAATATTGATTGCTCATGGTTTTTGGCTCAGAATA ATATTCCCTCCTTAAAATACAGGTTGAGGATCTTGCCCGTTTGTCCTTTCAGACCACTCCTATCTATATTGATGTAGATG ATGGGAGAAACAAGGTGATGTCTGTTGACTTTATCATATTATTTGAACTTATACATCAGCATTATCATCATACCTGAAAG GTTCCTCATCAATGCAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAACGATTTACCGTT CTCTATTCCTTCTTGAAAAGGAATAAGTCGAAAAAAGTGATGGTCTTTTTATCTTCATGCAACTCTGTGAAATTCCATGC GGACCTTCTTAATCTCATTCATATGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGGCCCGGACAACTACATTTT TTGACTTCTGCAAAGCAGAAACAGGGATCTTGCTATGTACTGATGTTGCCGCTCGTGGACTTGACATACCTGCCGTGGTA TGTTCATTTTTCTTATCAACTCAATATTTCTAAATGGTATTTTGAATGAGACTAAATTTTTACCCCCAATTATTTAGCAT GCAATCAGTCAATCTAATAGCTACCTAAAGATAAAAGAAGTATAAGAGAGAGTAAATATTATCGAAGGATGCAAAATTGG GGGTACCTAAGATGAAGTGCCTTTTGTTTTTAATCTTTTTTCTTCATTATTTATGTCTTAGGACTGGATTGTGCAATATG ACCCACCCGATGAACCAAAGGTACTTTCTGTTGTTCTATTGGTGAATCAATATCCTTTATCTATTTGTTTCGTGGCAATC TTATAACTTGATGTACGGTATAAGATATGTTCTTTATTGCCACCAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTG GGGAAGGTGGAAAAGGAAATGCCTTGCTTTTCCTGATTCCTGAAGAGCTGCAATTTCTTCGCTACCTGAAGGTTAGTTCT ACTGCATTTATCTGGAGAGAATAGTAAGCTCGCTGATACTGAATTATAATTTATTAAGTGTTCCTAGCTTATGCATTTAC TTTATAAAGTAGAGCTCCAAAATAGATTACTTGATTTGAATATCATGCTGAGAATACAATTGAAGCAGGATCTCTAACCC CAAATTTGTAAGAAATTATTCTCAGGTTATCTCAAATCATTAATTTTATATTTATGCTTATTTCAGGAAGCTAAGGTCCC AGTGAAAGAATATGCATATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACATGGTACAGTCCTTCTTTCTAGTGTTTT AACTAAAGTTTTATTTAATATTGTAACCAACAACAGCTTATCTTATAAAGGACTGTCTGGATTGGGCAGGAGAATTTGGT AGCCAACAATTATTATTTGAACAAGATGGCCAAAGAAGCTTATAGATCATACATATTAGCATACGATTCACATTCCATGA AGGATATATTCAACGTTCACAGTCTTGATTTGCAGGTATAATTTTCAGAGCATGTTTTGATGAGTTTCTCTAGAACTACT TTAAATAATCTTATGCACTTGTGCCCTAATATCATATCTGACATTTTAACTAATATAAATCTATTATTCGGGGATTCCTA TTTCTTATCTTTTCTTTTCATTTTGATTATAAGCTTTAGGATAGGGGCAAATTGAAATGGTTGGTTAATAGGAATAAACA TGGAACAAGAATCTCTGTTTTGAAAATGGAACTAAGTTCTACTTTTTCTGTTTCAGAGGAGAGAAAATGTTCTTAATAGG AAAACAAAAAAGGGTTTTTATGTTTGATTTGAATAGTAAAGCATGTATACACTATGACAAAACCATTTTCTGTACTTGTG CAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAAGTGAGTCTGAACATTAACGGCAGTAAGAAAAGGAAGAA AATGCGTCAAGTTGATGGAAGTAAACATGGATTCGGCCACAACAATCCTTATGGAAGCAGGGGAAATGCTGACGATCAGC GGCAGTTTGTGAGGTATTAGCAGTGGACATGCCACTTATTAGAATACACAACGGGTGTTATTTCATGCACCAGCAAATAG CACCCCCAATTTTTGAGTCAGATTTTGTTTATTTGTCTCTTTAGTCACATTAATCAAACAATAAGTTAACTATTTTGTTG TTGTAAGCTCACTCATTAATTAATCTTCAGAAATAGCGTTTGAAAAGAAATGGTGGAGAACTGGAGACATTATATAGTAT AAAGATAAGATTAAACTTGAGATATGTTTGAAATATATTAATTTTGTTTATAATGTGTGCTGTTGCCGTTACAAAGATAT TCTTTGGTCTAAGGTGCTTATCCTCCACGAGAATGATTCCTGCTGTAGTTATAAAGATTTGAGTATATATATATAATTTT ATTTCCTATCCACAAACGTACGTGACCATACTTACTAAGATTTGAGCATGAATATAATTTTATTCATATACGGCCTTGAG TGGTTGAGTGAAGGCATAGAGGTTGTGGGGGGACTGTCATGGCTAAGTGTTTGTGGTTCTGATGGTGTCATGACTGGTGG CGCATGTGGTGGTAGAGGCGGAGCTGAGGTGGCCAAGAGTGATTCCAATAAGTTAGATGTTAGTGAAATTCCTATTATAC TTTCAACTATTTGGTGGCATAACATGCAACACTTTTCTTAATGTACAATAAACTCTAGCTGCCACACATGTACTTCTGTT TGTTAGCTAAACAAGACTGTTTGTAAGGTTGGCTGGGTAGGCAATTGTTGACCTGGCGTTCTACTTCTAGATTTTCCTTT CTTTCACATTGTCACCGATCTGATTTTTCAATATGAATAGAGAAAAACATGAAAATAATTTGTTCATGGAATATTATAC
CDS sequence (LotjaGi4g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAACCAGAAGACAACCTTCAATCCTCACCTATGGTTGAAACAGAGAACAACAAAAAGAAGAAGGAGAAGAAGAA CAAGCACGACAAGAAAAGACCTCGAGATGTTGCTAACGAGGAGCACGCAGAAGAAGAAGAGGAGCAGATTGGGAATAACA GTGACAGGGATGGAGAATCGTCAAAGAAGAAGAAGAAGAAGAAGCATAAAGTGGAAGTGGAAGAGAGAAAGGAGAAGAAC AATTCTGGGTCTGGAATTATGAGCACTGAATCCTTTGCTTCTCTGGAGTTGTCTGAACCTACTTCTAAGGCCATTGCAGA CATGGGATTTCAGTTCATGACTCAGATTCAAGCTAGAGCAATTCCACCACTTCTTACTGGAAAAGATGTTCTTGGGGCTG CAAGGACCGGTTCTGGAAAAACTCTTGCATTTTTAATTCCTGCTGTGGAGCTTTTGTACAAGCTTAAGTTCACGCCTCGT GATGGAGCTGGTGTCGTTGTGATATGCCCAACTAGAGAGCTTGCAATGCAGACACATGCGGTGGCCATGGAGCTTCTCAA GTATCATTCACTAACTCATGGAATTGTTATGGGAGGTTCAGCTAGAAGAGCTGAAGCTGAAACCATCGCCAGAGGGGTAA ACCTATTGATAGCAACTCCTGGTCGGCTTCTAGATCACCTTCAAAATACAAAGAGGTTCATACATAATAACTTGAAGTGC CTTATGATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAA GAACAGGCAAACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTTTGTCCTTTCAGACCACTC CTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGT GCCAAACGATTTACCGTTCTCTATTCCTTCTTGAAAAGGAATAAGTCGAAAAAAGTGATGGTCTTTTTATCTTCATGCAA CTCTGTGAAATTCCATGCGGACCTTCTTAATCTCATTCATATGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGG CCCGGACAACTACATTTTTTGACTTCTGCAAAGCAGAAACAGGGATCTTGCTATGTACTGATGTTGCCGCTCGTGGACTT GACATACCTGCCGTGGACTGGATTGTGCAATATGACCCACCCGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAAC AGCTCGTGGGGAAGGTGGAAAAGGAAATGCCTTGCTTTTCCTGATTCCTGAAGAGCTGCAATTTCTTCGCTACCTGAAGG AAGCTAAGGTCCCAGTGAAAGAATATGCATATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACATGGAGAATTTGGTA GCCAACAATTATTATTTGAACAAGATGGCCAAAGAAGCTTATAGATCATACATATTAGCATACGATTCACATTCCATGAA GGATATATTCAACGTTCACAGTCTTGATTTGCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAAGTGAGTC TGAACATTAACGGCAGTAAGAAAAGGAAGAAAATGCGTCAAGTTGATGGAAGTAAACATGGATTCGGCCACAACAATCCT TATGGAAGCAGGGGAAATGCTGACGATCAGCGGCAGTTTGTGAGGTATTAG
Protein sequence (LotjaGi4g1v0415000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEPEDNLQSSPMVETENNKKKKEKKNKHDKKRPRDVANEEHAEEEEEQIGNNSDRDGESSKKKKKKKHKVEVEERKEKN NSGSGIMSTESFASLELSEPTSKAIADMGFQFMTQIQARAIPPLLTGKDVLGAARTGSGKTLAFLIPAVELLYKLKFTPR DGAGVVVICPTRELAMQTHAVAMELLKYHSLTHGIVMGGSARRAEAETIARGVNLLIATPGRLLDHLQNTKRFIHNNLKC LMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLQQGYVVVPC AKRFTVLYSFLKRNKSKKVMVFLSSCNSVKFHADLLNLIHMNCSSIHGKQKQQARTTTFFDFCKAETGILLCTDVAARGL DIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANVQSHMENLV ANNYYLNKMAKEAYRSYILAYDSHSMKDIFNVHSLDLQAVAASFCFSNPPKVSLNINGSKKRKKMRQVDGSKHGFGHNNP YGSRGNADDQRQFVRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 87 | 87 | - | – | |
| Coils | 13 | 33 | 21 | - | – | |
| Gene3D | 39 | 300 | 262 | 1.3E-71 | – | |
| PANTHER | 51 | 564 | 514 | 9.9E-201 | – | |
| PANTHER | 51 | 564 | 514 | 9.9E-201 | – | |
| ProSiteProfiles | 90 | 118 | 29 | 10.033 | ||
| CDD | 101 | 298 | 198 | 5.29729E-130 | – | |
| SMART | 109 | 314 | 206 | 2.3E-55 | ||
| Pfam | 114 | 285 | 172 | 4.7E-45 | ||
| ProSiteProfiles | 121 | 296 | 176 | 30.541 | ||
| SUPERFAMILY | 162 | 453 | 292 | 2.33E-61 | ||
| ProSitePatterns | 242 | 250 | 9 | - | ||
| Gene3D | 307 | 549 | 243 | 2.1E-50 | – | |
| CDD | 311 | 441 | 131 | 8.63748E-52 | – | |
| ProSiteProfiles | 323 | 480 | 158 | 19.671 | ||
| Pfam | 324 | 430 | 107 | 5.7E-24 | ||
| SMART | 350 | 431 | 82 | 6.4E-25 | ||
| SMART | 471 | 534 | 64 | 4.3E-28 | ||
| Pfam | 472 | 532 | 61 | 6.2E-19 | ||
| MobiDBLite | 539 | 569 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0415000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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