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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0425400 |
| Transcript ID | LotjaGi4g1v0425400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT1G63470.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q8GXB3|AHL5_ARATH AT-hook motif nuclear-localized protein 5; TrEMBL-Plants: tr|O04696|O04696_PEA AT-hook motif nuclear localized protein 1; Found in the gene: LotjaGi4g1v0425400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80020362..80024175) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCATCTCCATTATCTTCACCACAGAAAGCTTGAGCAAAGGCTCAGAACCCAAAGAAGCAAGAACTTGCAATGAGAAA AAAGGACATGAGTTTGGTAGGACACACTTTCCCTCCAATGCTCATTAGCCTGCCATTCCAGTTGGTATTGTTTTGTTTGT TGTGTTTGCTTTTTTTAATGTTTCTGCCTTCTTGGTCAGATACTTCCATTTCCACCACTCACTCACTCCAGCCTAACTAG TGACTAGTGACTGACTACTACCCAAAGTTCCAACCCAAGCACACCATTAACAAAAGGCTCTTCCTTTTACTCATCAGTTT CACACACACTCTTCACTCACCCACCCCACTTTAATTCAAAACCTCCAATTTTTATTCTTTATTTTTTCTCAACCCAGGTT CCAACTCTCACTCTTTGTCTTTTCTTCCCTCTCTTTTCCCCCTTTTTCCACTTCCTGCACTCTCCTGTCAAAACCCTAGA TTTCAAATCTGGGGTTTTGTTTTCTCAATGTGTTGCAGAGACATGATTCTGAGCACTGCCAGCTTGCAAGTCTGAATTTT TTGTCTGGAATCCAAGCTTCTGATGTTCCAGCATTTTTTATTTCTATATATTTCCATGGTGACACTGGTTTGAGTTCTAA AGCTTACTCCTTTCTAATTGGTAGGAGTTTTGATCTTTGGTGTGGTGCTTTTTCTAATTGGTAGGAGTTTTGATCTTTGG TGTGGTGCTTAGATTTGTGTAGGTGATTTTGATTTTTAACATAGTTGCATAGGTGCCAGAAAGTTAGTATATTTATTACA AATTTCTGGTGAATGCATGGATGGGAGAGAAGCTATGGCATTTTCTGGTGGCTCTGCATATTTCATGCATAGAGGAGGGG TCCCAGGGTCTGGCTCTGGGACTCAGGTAGGAGGAGGAGGAGGTGGGGGGTTTCAAGGACCCCCTGGATTCAGAGCGTTG TCGTCGAACCCTGGCATTCAAGCTCAGTCAAATGCCAGGGTTCAGGGTGGCTCTGTTGGTCCTAGTCCAACATTTTCAGT GGAGCCTCAGGTTCGTGCCGATTTTAATCGCGGCAGTATCATTGGTGCCTCTTCTGGGACACCTTCGAGTGAGCCTGTGA AAAAGAAAAGAGGGAGACCTCGTAAATACGGTCCTGATGGACCAGGACCAGTTTCTTTGAAACTGTCTCCAATGTCTGCC CCTGCTAATCCTAACCAGGGTTCGACCACATCGTCTGAGAAACGCGGTAGAGGCCGCCCACCTGGATCTGGAAGGAAGCA ACAGCTAGCCCTTTTAGGTATATTTCTGTGATAATTATCATTTCTTGTTGGTTGTATTTACACTATGGTTAATAACTCCA CACATTACACAGTTACACCTAACAATATGGTTGTTTTGGTGGTATATTTATTTGCTTAAAGCATGTGGGCCTCTAACATC TTGGTTGCTTTGCAGGTGATTGGATGAATAGTTCAGCAGGGGTGGCTTTTTCTCCACATGTTATCACCATTGCTGTTGGG GAGGTAGTTATATCCTTGTTGTTCATAAGCAATGTAGATTTTTCATTCTTGTTTATTTAGTACCCTTGTTATTTTTTCTA ATCCTGAATGTGAAATGTTAAGAGGCTTTATACTTCTTAAGAGGATCATTTCATCCTAAATGTTGCTCTTAGGGGGAAAT TTTAGTGGCCCATTGCTCTGAGTAGTGCTAAAATATTATTCATTGTTTATATTAACCTAGGGGAAAAATATTCTCTCAGT TTAGTAAATTTGCTTTCAGTGACTTTAGAAGTTCTGGTTGATAGTCCATAGTCCTTAGAGTTCTGAAAAACAGTAATTGG GAGTGGAATTTGTTATCTTAAAAAAAGCATGCTTCACCATTATAATTCAGGATATTACTTGTTTTATTATTCATTGAAGC CTTCTTATTGATGGACATTAATTCAGAAGTTCCTTGAATGATAGACTTTCATCATTTCAGGACATTGTAGCGAAGTTATT GTCATTATCACAGCAGAGACCAAGGGCACTTTGCATCTTATCGGGCACTGGAACAGTTTCTTCAGTTACTCTCCGACAGC CTGCTTCCACCAATACCAGTGTAACTTTTGAGGTTAAAGCACTAACTTCTACTGCTAAAAGTGCCTAAGATTGGTTCTTA TGATGTATTGAGAAACTTATTTTATTTTTAAACTATTGCAGGGGCGATTCCAAATATTATGCTTGTCTGGTTCTTACTTG GTGTCTGAAGATGGAGGACCCTCAAACAGAACAGGTGGCATAAGTGTTTCTCTTTCTAGCCCTGAAGGTCATGTTATTGG TGGTGGTGCTGCTACGCTTATTGCTGGAAGTCCAGTGCAGGTACATTATTGATTCCCCAAAAATCTATGGTTACCTTGAA GTACTGGTTATTCTTACTTTTGCTTGCGTAATTGTGGTAGTAGGCCAATTCAATCCATAAGCACCATTGGGATATAACTA TGTTTGGTCTCTGATTTCTGAATTTGTTATGCTATTCCTTTATTTCCACTCTAGAATGTTCTGTATCTTAGGATGTGGCC ACCTGTATGACCAGCCTTAATTCTAGGAAGATGACTGTTAGGATAAATTTGCATTTTTTTCATTATGCACAGAAATTTTA GCTTTTGCTCTGCATTTTGTTTTCTTAGCTTTTCTGAGTTGTTCTTAGTAAATCTAGATTTTTAGGAAATTGCTTCCTAT CAAATTGTGCATGCTGTTAATGAAACTGCAACGTGTTTTGGAATGGGTTGGGGGAAACTGAGATAGGGAAGTAATATGGT CTTGGTGTTGCTTAGGTCTGTTCTTGCTATATCGTGGTAGGGATGTTTAGTAATGCTTCACATTGTTCTGCATCATGTGA TGCTTTACATTCAAACCGAAGCAATATCATTAACCTAGAAACATGAAAGTGGATATGAGTTAAGCTTTGCTTCCTGCAGG TGGTATTGGGCAGTTTTGTGTATGGTGGTGGCTCTAAGACAAAGACCAAGCAAGAGGCCACTGACAGAGATGAAAGTTCT GAGCCTCTTCAGCACAGTGACAAGTTACCTTCTCCAGCCAGTGCCCCACCTAGTCAAAACTACATCTCCCCTGCAACCGG CATTTGGCCTGGATCGCGACCACCGGACCTGAAAAGCGTGCATGCACACACTGGCATCGACTTGACACGTGGCTGAAATT TTATTCTGGAAGCAGTGTTGTATATACCTGTTGTTGTAAATTTACTTTAGTTTGTGAGCATTGTGGCTTTGCTTGTTATC CCCATTGTTGGGTGACAAGTTTCCATTCACATGCTGAAACAAATGAATCATTCAGCATTAATGACTATTCTTGACTCATT CAAAAAATGTCTGGTTAGATGTTAGTGATTTACATTGTCTCAATTTGATTTCAATGAATTAGGGATTTACATTGTCTCAA TTTGAGTTCAATGAGTTCTGAGATCCCACTTGGGGACCGCAGATAGTGTTTCACATTGAAACTATACTCTAGCTGCCTAG TGGTCTGAGCTCAATTATTAACTTGGCGTTGGTTTTGATATATATCTATTTATTATGCTTTTCAGCCTAGTATTAATCTG CACTAATATGAAGAATTATGTTCCTTCTAAGAATTTCATGAAAAAAAAAAAATCGTCGAAGTGCTATTTGTTCTAATGTA CTAGTAGACCAGTTTGTTATAATGTATATATGGAGAGAATCCAGGAGCTGTTGATACGCCTTCAATGATGGTGCCAATTA TCATTCATGAAGCAGGGCATTGGGAAGAGCATTGCTCTTCATGAACAAGTTGAG
CDS sequence (LotjaGi4g1v0425400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGGAGAGAAGCTATGGCATTTTCTGGTGGCTCTGCATATTTCATGCATAGAGGAGGGGTCCCAGGGTCTGGCTC TGGGACTCAGGTAGGAGGAGGAGGAGGTGGGGGGTTTCAAGGACCCCCTGGATTCAGAGCGTTGTCGTCGAACCCTGGCA TTCAAGCTCAGTCAAATGCCAGGGTTCAGGGTGGCTCTGTTGGTCCTAGTCCAACATTTTCAGTGGAGCCTCAGGTTCGT GCCGATTTTAATCGCGGCAGTATCATTGGTGCCTCTTCTGGGACACCTTCGAGTGAGCCTGTGAAAAAGAAAAGAGGGAG ACCTCGTAAATACGGTCCTGATGGACCAGGACCAGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTAATCCTAACC AGGGTTCGACCACATCGTCTGAGAAACGCGGTAGAGGCCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCCCTTTTA GGTGATTGGATGAATAGTTCAGCAGGGGTGGCTTTTTCTCCACATGTTATCACCATTGCTGTTGGGGAGGACATTGTAGC GAAGTTATTGTCATTATCACAGCAGAGACCAAGGGCACTTTGCATCTTATCGGGCACTGGAACAGTTTCTTCAGTTACTC TCCGACAGCCTGCTTCCACCAATACCAGTGTAACTTTTGAGGGGCGATTCCAAATATTATGCTTGTCTGGTTCTTACTTG GTGTCTGAAGATGGAGGACCCTCAAACAGAACAGGTGGCATAAGTGTTTCTCTTTCTAGCCCTGAAGGTCATGTTATTGG TGGTGGTGCTGCTACGCTTATTGCTGGAAGTCCAGTGCAGGTGGTATTGGGCAGTTTTGTGTATGGTGGTGGCTCTAAGA CAAAGACCAAGCAAGAGGCCACTGACAGAGATGAAAGTTCTGAGCCTCTTCAGCACAGTGACAAGTTACCTTCTCCAGCC AGTGCCCCACCTAGTCAAAACTACATCTCCCCTGCAACCGGCATTTGGCCTGGATCGCGACCACCGGACCTGAAAAGCGT GCATGCACACACTGGCATCGACTTGACACGTGGCTGA
Protein sequence (LotjaGi4g1v0425400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGREAMAFSGGSAYFMHRGGVPGSGSGTQVGGGGGGGFQGPPGFRALSSNPGIQAQSNARVQGGSVGPSPTFSVEPQVR ADFNRGSIIGASSGTPSSEPVKKKRGRPRKYGPDGPGPVSLKLSPMSAPANPNQGSTTSSEKRGRGRPPGSGRKQQLALL GDWMNSSAGVAFSPHVITIAVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNTSVTFEGRFQILCLSGSYL VSEDGGPSNRTGGISVSLSSPEGHVIGGGAATLIAGSPVQVVLGSFVYGGGSKTKTKQEATDRDESSEPLQHSDKLPSPA SAPPSQNYISPATGIWPGSRPPDLKSVHAHTGIDLTRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 351 | 351 | 1.5E-134 | ||
| PANTHER | 1 | 351 | 351 | 1.5E-134 | – | |
| MobiDBLite | 21 | 154 | 134 | - | – | |
| MobiDBLite | 50 | 73 | 24 | - | – | |
| SMART | 102 | 114 | 13 | 0.54 | ||
| MobiDBLite | 126 | 144 | 19 | - | – | |
| SMART | 142 | 154 | 13 | 16.0 | ||
| ProSiteProfiles | 166 | 309 | 144 | 33.872 | ||
| SUPERFAMILY | 171 | 290 | 120 | 1.2E-23 | – | |
| Gene3D | 173 | 305 | 133 | 1.8E-8 | – | |
| CDD | 174 | 286 | 113 | 7.82701E-31 | ||
| Pfam | 174 | 287 | 114 | 7.3E-24 | ||
| MobiDBLite | 292 | 358 | 67 | - | – | |
| MobiDBLite | 296 | 311 | 16 | - | – | |
| MobiDBLite | 312 | 333 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi4g1v0425400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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