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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0431200 |
| Transcript ID | LotjaGi4g1v0431200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT1G64110.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|A0A0B2Q5I4|A0A0B2Q5I4_GLYSO Putative AAA domain-containing protein C24B10.10c; Found in the gene: LotjaGi4g1v0431200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80530781..80536124) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACTATTTACTTGATACTAATCTATGCCTTCATTGATGTGCTCGATGGAGGCTTGATTTGGCCAATCTAATAGTATG TTTGGACCAACTTTGTTTTCTTCATAATCAATTATGACACCCTGAAGCTACTCACGTAAGCTTCTCCTTAGAATTGATTT TGGCTGCAGAATCAATCAAATCGTAGAACAATTTTCAAACATGCTCTGAAGCTATAGTATATATGTACTTAATCAATTCA TATATGTTCAGATATGAGTATAACACTTTCTATCCTTTGTGTTTGATAACAGTGAGCGGACAAGGGTTTTGCTGACAAGT GCTGCTTATGTCCATTTAAAGCATGCTGAGGTTTCCAAATATACACGTAATCTTGCTCCTGCAAGCCGAACAATTCTACT CTCAGGGCCTGCAGGTTAGTTATCTTTTGTTTTCTGACAAGGGATTGAGATATAGTTTGATGTTTCCACTTTCAATTGTC ATTGTTAAACTAACTATATTTTCCTCTACTACTTTTTTATGTCTTGATAGAACTTTACCAACAGATGCTTGCCAAGGCTT TAGCTCATTACTTTGAGGCCAAGTTGCTTCTCCTAGATTTAACTGACTTTTCATTGAAGGTGTGTACTAGAAGTTTGGAG TCATTTGACTCAATTCTACTTTCTCCTGTTACTTATGTACTTAATGTTTGATCTTTCGTTTGTGCAGATTCAGAGTAAAT ATGGTTCTTCTTCCAACAAAGAATCTGTAAGATAATCCTGGTTTATTTTTATGGCTTTTACTTGGGTATTCTGTCATCAT AGATAAACATGATGTTCTTTTTGACCTAATTTTTTGCTCCCTTTATTCATTTTTTCCCATTCTTTCTATTGTAGTCTTTC AAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCGGACCTATTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGA ACCTAAAGGTACTAATTATCAACATCATCAGAGCCATGATGAAGAGCTACATCCATAACCAACCAAAAGCTTTGTTAATC ACTTTCTCGATCTTTTATACAATGTTTTGCTTGCATTGAAGAACAAGTTTAACTTCTTATGTGGAGGGAAGTTATAGTAA TGATAGCTTTAATTCATGAGAAGATGCTGCAATTTTTCCCAAGCACAATAGCTAGTATCTCTCGAACTTGTCTCTTTATC AGGACATTAACAGCCAAAATGTTAGTCTTTAACTGACAATTTGTTAAACGGGAAGGCGCATAATAATCACACCATTGACC AGGAGCTTTTTGTTGCAGGTAAAATGCACAGGCCAAGCAGTGGAATGGACCTACAATCAATGTAAGCAGGGTAGATGAAT TATGTTCTGACTGAAAAGAATTATATAACTTGCATAATAGTTTATTCATATCATTTATAATATCTACCTTTTGATTTGCA GGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCCGAAGGAATGCTGCTTCTTCATCGAATATTAGCGGCCTTGCTTCG CAAAACAATCCTACAAATCCAGGTGATTTAAGAGATCTTGTAAAGAGATTGATGGTGATGGTTTTGGATTTGGAATTTCA ATCTGCATCATTGGTTTTGTTCTTGAATATCTTTTTGGGAGAGATCATTTTCATATTTGTTGAGAAACTGTCGATTTTAT AATTCAACCTTTTGTTCTCTCTCATGATTTCTTATATCCTTTAATTCCCCTTCAGCTCCACTGAAGCGCACAAGCAGCTG GTCTTTTGATGAAAAGCTCCTTATACAGTCTCTTTACAAGGTAATGTTACTTTCAATTTATAAAGATTTCATAACCATGT TGTTCAGAGCTAAACAAGGTGTTTGATATATTCCTCCACAAACTTATTAATAAGAGGAAATTGTACCTGCAGGTTCTGGC TTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGCTGATATGTTATTATACAGATCACAAAGGATATATA ACATGTTCCAGAAAATGTTAAAGAAACTTTCTGGACACATTCTGATTCTTGGCTCACGAGTTCTTGATTCTGGTAATGAC TATGAAGAGGTGGATGAGAAGCTTTCTATGCTCTTCCCATACAACATAGAAATCAGACCCCCAGAAGATGAGTCGCATCT TGTTAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGC TTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATTGAA GAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTC TTCCAATAGGTGAGACTGCAAACTTTTTTTTAATGAAGTTCAGACTTGCAACCTAAATTGGATGGAAGATCTATAATTAA TGTACTTACTATTTCTTGTGGAACAGTTTGTCCCATGCATTGGGTATATTCCACAAGGGGAAATTTGGTGGTAAAAAAGA ATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGAAACCTGAGGTTTGCTTTACTTTTCATGTTTGTAAATTGAGAA CAACACCTAGTTGGTATTAATATGCTTTTATTTCTCTCTGTCTCTCTCATGGACATAAAAAAGCAAAAGGAGGAAGGAAA TGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAAGCAGAAAAGTCAACTTCAGTGGGAA AGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGTAAGCCTTTTGTTTCTCTTCATAATTTCGATTGATTTT GAATTAAACTGATTTTGGTAAAAGTGTTTGTCGTAAAAGTGAAGTGATTTTATGTTAGGGTACTTTTATGAGAAAAATGA TTCTTTGGAGTAATATTGTGAAATCCAGTTATGAAATCCCAAAGTTGATTATGTACATTGCAAAAGCTATTCCCTCTAGC TTCTCCATAGAATTGGTTTTGGATCGAGACTAAAACCAATTCTTTAAGGCAATTGACAGGCAATTATAACCATCTAAAAG TGATTCTGGTAAATGAGAGTTGATTCTAAGACTCCCAAGTCGGAGTTCACTTCATATCTTTGGGATTTAGGACACTCCTT TCTTATCAAACATTTACTGTCCATTATTGACTTGCAGGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAATAAGGAGTG AGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCTTAGAAGAGACCAAAGAATCCCTTCAAGAA CTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTAAAGCCTTGCAGAGGAATATTGCTATTTGG GCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGCTGGAGCTAGTTTCATCAATGTATCAATGT CTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTTTGTTTACACTTGCAGGCAAGGTCTCACCA ACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGAGTAGGGGAGCATGAAGCCATGCGAAAAAT CAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGAGCGTATCCTTGTCCTTGCTGCAACCAATA GGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGGTAGTTACCTCTACTAGTTCTTAAATTGCACTTG AATCATTTTAAACTATGTTTAGATATCTGTCGTGACCAGTGCAACTAACGTGCACTTTAAGATTAAAAGTGAACAGATTT CTTCTTATTGGTTAGGATGAAAGCTCGTCTACGTTGCACTGAATCGATATCCAAACACATACTTATATGCTGCCAGTTTC CATTACATTTCTATATTCTTCATATATGTGTATAGTTTACTTCCTCATTGTTGTGATAAACTTTTTGTTAAATGAAGTTG ATGGCATATATAGCTGCTATCTATAATATATGACTAGAGTACCCTGAAGGCCTGAAGTTGAAGAGTAGTTCTTCATTTGG GTTTATTCTGATGCAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAG GAAAAGGTGGACCAGGAACTTGATTTCAAGGAACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCTGAAGGTTTT TGTTGTTTTCTGATATTGTTCCTATGCATGTGACTGTACTATGTAGTGCTATTGTAATTTTGTTATATTGTGCTGTGATT ATCTCATTTATTCACTGTCATTAACTCTTCAATTTAGAATTTATGCACAACTGCTGCTTATCGGCCTGTTAGGGAGTTGA TTCAGCAAGAGAGACTAAAGATCCTGGTAACTGTGCTATATTTGTATTTAATATCTTGTATGTATTACATATCCTGACCT GATCATGTGTTCATCTGGATGCTGTTTTTCCCAGGATAAAAAGCAGAAAACTGCCATGGAACAGAATAAAGATGTCCAAG ACAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTCAAGATACAGAAAAGGAAGTTCAACAAGAAAGAGTT ATTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTAACTATTTCTGTTTTATTAAAATAAAG GATTTTTATTTTGTAGGATTCATGTTTTTTCATGGATATTTTTGGATTTACATGATGTATCTTTGAAGCTTGAACTCTTT CAGCTATGTTTGATTTGTTTGCTTATGTGGGCATAAATGATGTGTCATGAACCAACTATTCCAAAAGCGTTAGCTATTAG CTGAAGATACATAAATGATTTTAATTATATTTCTTACACACTATCTCACGCAAGAGCTTGTGGACAGTAGTGGACAATGC ACAGGCTCATCAATTTTGTGCTGAAATTTAACTTAGTTGCAGTAGAAGAATGTGACAATAGAGATCGAACTCTATATCAC TAATCAAGTGATATGATCACATTGGGCTTTTTCTATTGTAGTAGAATGTCTAGTTATGTTGTGACTCTGAATTGAGTAAT GCTTCATCTCAATATCCTCTTGGACTGCAGGTTGCTGCAAGCTTTGCAGCAGAGGGGGCTGGAATGGGTGAGCTGAAGCA GTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACAATTGTCCTACTTCCTTTGA
CDS sequence (LotjaGi4g1v0431200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTCCTAGATTTAACTGACTTTTCATTGAAGATTCA GAGTAAATATGGTTCTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCGG ACCTATTTGGGTCATTTTCATTCTTTCCACAAAAGGAGGAACCTAAAGTTGCAGGTAAAATGCACAGGCCAAGCAGTGGA ATGGACCTACAATCAATGGGGGCTGAATCATCTTGTAATCCTCCAAAGCTCCGAAGGAATGCTGCTTCTTCATCGAATAT TAGCGGCCTTGCTTCGCAAAACAATCCTACAAATCCAGCTCCACTGAAGCGCACAAGCAGCTGGTCTTTTGATGAAAAGC TCCTTATACAGTCTCTTTACAAGGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGGGATGCTGAT ATGTTATTATACAGATCACAAAGGATATATAACATGTTCCAGAAAATGTTAAAGAAACTTTCTGGACACATTCTGATTCT TGGCTCACGAGTTCTTGATTCTGGTAATGACTATGAAGAGGTGGATGAGAAGCTTTCTATGCTCTTCCCATACAACATAG AAATCAGACCCCCAGAAGATGAGTCGCATCTTGTTAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTT CAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTAGC AGACACAATGGTTCTCAGTAACTATATTGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACC TTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTGTCCCATGCATTGGGTATATTCCACAAGGGGAAATTT GGTGGTAAAAAAGAATCAAGTGATACGTCAAAATTGGAAGATCAAGCTGTGAAACCTGAGGTTTGCTTTACTTTTCATCA AAAGGAGGAAGGAAATGTTACAAAACCAGCAGAGAAGTCTGAAGGTGCTGCTCCTGCAAAAAATGCTGAAGCAGAAAAGT CAACTTCAGTGGGAAAGGGGGATGGTGAAATTTCAGTTCCAGCTTCCAAAGCTGTTGAAGTTCCTCCTGATAATGAATTT GAGAAGCGAATAAGGAGTGAGGTTATACCAGCAAACGATATTGATGTCACGTTCTCTGATATTGGTGCCTTAGAAGAGAC CAAAGAATCCCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGCGGGCTTCTAAAGCCTTGCA GAGGAATATTGCTATTTGGGCCTCCCGGCACGGGGAAGACAATGTTGGCGAAGGCCATTGCAAAGGAGGCTGGAGCTAGT TTCATCAATGTATCAATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTCCGCGCTTTGTTTACACT TGCAGGCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAGAGGACCAGAGTAGGGGAGC ATGAAGCCATGCGAAAAATCAAGAATGAATTCATGGCTCACTGGGACGGGCTTATGACGAAACCTGGGGAGCGTATCCTT GTCCTTGCTGCAACCAATAGGCCCTTCGACTTGGATGAAGCTATTATTAGGCGTTTTGAAAGGAGAATTATGGTAGGACT ACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACACTAGTGGCAAAGGAAAAGGTGGACCAGGAACTTGATTTCAAGG AACTCGCAATTATGACGGAAGGATATACTGGAAGTGATCTGAAGAATTTATGCACAACTGCTGCTTATCGGCCTGTTAGG GAGTTGATTCAGCAAGAGAGACTAAAGATCCTGGATAAAAAGCAGAAAACTGCCATGGAACAGAATAAAGATGTCCAAGA CAGACAAGGAGAAAAATCAATGGTAGGAAGTACCCAAGATGCTCAAGATACAGAAAAGGAAGTTCAACAAGAAAGAGTTA TTACCCTCAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCAGAGGGGGCT GGAATGGGTGAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGTTCGAGGAAGCAACAACAATTGTCCTACTTCCT TTGA
Protein sequence (LotjaGi4g1v0431200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSSNKESSFKRSTSETTLERLSDLFGSFSFFPQKEEPKVAGKMHRPSSG MDLQSMGAESSCNPPKLRRNAASSSNISGLASQNNPTNPAPLKRTSSWSFDEKLLIQSLYKVLAFVSKTYPIVLYLRDAD MLLYRSQRIYNMFQKMLKKLSGHILILGSRVLDSGNDYEEVDEKLSMLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQV QDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLIISSNSLSHALGIFHKGKF GGKKESSDTSKLEDQAVKPEVCFTFHQKEEGNVTKPAEKSEGAAPAKNAEAEKSTSVGKGDGEISVPASKAVEVPPDNEF EKRIRSEVIPANDIDVTFSDIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGAS FINVSMSTITSKWFGEDEKNVRALFTLAGKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLMTKPGERIL VLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLVAKEKVDQELDFKELAIMTEGYTGSDLKNLCTTAAYRPVR ELIQQERLKILDKKQKTAMEQNKDVQDRQGEKSMVGSTQDAQDTEKEVQQERVITLRPLNMQDFKEAKNQVAASFAAEGA GMGELKQWNELYGEGGSRKQQQLSYFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 747 | 747 | 0.0 | – | |
| PANTHER | 1 | 747 | 747 | 0.0 | – | |
| MobiDBLite | 67 | 123 | 57 | - | – | |
| MobiDBLite | 83 | 123 | 41 | - | – | |
| MobiDBLite | 348 | 387 | 40 | - | – | |
| SUPERFAMILY | 415 | 655 | 241 | 9.77E-60 | ||
| Gene3D | 415 | 715 | 301 | 1.6E-94 | – | |
| SMART | 452 | 589 | 138 | 2.0E-19 | ||
| CDD | 454 | 587 | 134 | 4.21801E-24 | – | |
| Pfam | 456 | 586 | 131 | 9.1E-38 | ||
| ProSitePatterns | 559 | 578 | 20 | - | ||
| Gene3D | 589 | 714 | 126 | 1.6E-94 | – | |
| Pfam | 610 | 644 | 35 | 1.1E-9 | ||
| MobiDBLite | 654 | 670 | 17 | - | – | |
| MobiDBLite | 654 | 689 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0431200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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