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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0435600 |
| Transcript ID | LotjaGi4g1v0435600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT5G53110.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A; TrEMBL-Plants: tr|A0A0L9TGX6|A0A0L9TGX6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80880861..80884091) extracted from Lotus japonicus Gifu genome v1.2.
GCTAGCACTATTCCTGAAATTCCATTGCATTGCAGCTTTGAGGTTAGAAGTGACTCCACATCATGTTTATTTTGTCCATG TTTCTTGTCCCGTGCTATTAGTCAATTACTGGACAATTGCCAACCAAGTACGCAAGCACCTCTATTCTATTCTCTCAATT GACCATCTTTGACAACTACCTTTAAGCAAACAAGGATTGACTTGTGCTATCACTTCATTTTTTCTTAACTACTCAACCGC ATACAACACAACAAGTTATCATTCTTCCCTTAATCAATGGCTTCCTTAGCCCTGTTCTATGTATTCTACACTCTTCTTTT CCATCTCCAAAGCACTAGAGGCAAACAATTTTGCAACCCCATATCATGCGGTGATGTAGATATTAAATTTCCTTTCGGAT TGAAAGGAGCTAATGATAATTGTAGCTACAGTCCGAGGTTTCAACTCTCTTGCAACAACCTCAGCCAAACCATTCTGAAG CTCCCAAATTCAGGGGACTTAATTGTGAAAAGCATTGATTACAGAGCCCAAACCATCCGAGTCAACGATCCAGAAGGTTG TCTACCGAACCGGTTCATGCACGATTGGAACCTCTCCGGTTCACCTTTCAAGCTAAACCCGATTATATACCAAAGCTATT ACAATCTCACCTTCCTTCGTTGCCCAAACAACTCGACCGGTTCATCGTCTTTCGGTTTAGCTTGTTTGAGCAATAAAGGG AAAAACAAAAACTCATCAGACACGGACATTAGCTCCTCAATGGTCTTGGTATCGTGGTCTCGGCCTATTGTCTCGTCACT GTCGCAACGATGCGAGGTGATTGGTTGGGGTCGTGTTCCTATTTCGTGGGCCGAGATGCCCATGTGGCCTTTCTGGCCTG ATCTCAACAGTGATGTTCGGTTGGTGTGGACTGAACCGTGGTGTGCGAACTGTGCGCTTGATGGTCAGGTATGTGGGTTC TCTAATGATAAGAAGAAAATCCTTGTTGACCAAAAGAGAAACAAGAAAAGCCTTCAAGTTCAATGCTACCCTAGTGCCTC TAGTAAAGGTGTGTTCTTTCTTTTCCCTTCCCTGTTTTCATTCTAGTGCCTATGATGTGTGAATGGTTCGGCTTGTTTAA GTTTTGTCTTATGTGAACACCACAAACTTGATTTTTGATGAATTTACTTTTAGTTGAAAGTAGTTGTGTTTGAATTTCAA AAGAAGTTTGTAACAAAGTTTATACAAAGAAGGCTGAGCCAAGATCAATGGCTTACTCAATCTTAGGCAAAGGCTAATGA GATGAAGTTATCTTCATTATACATTTTTTTTACTGAATTTTAGTAGTGTGACATGTTATATATTTAAATTCACTCTTTTT AGTCTTTTAACTCCTCTCGGTGCTCATTTAACGTTATCGTCCTTTTAAATAGTTATGAGTCTTATGACTATTCAATCACC AAGTTAGATTTATAGAATTAGCTAACATTATACTACATCCAGTCCTATTTATTATAAAATTAAATGAGAGGTTTAATTTG GTCTCTTTTATAACAACAGCTTAAAGTTTCATCGTGTTATTAAGAGAGACCACCAACCATGTTACTAAAATATTATTAGA AACTAAAACCAATTAGAGTCCAAAATTGCAAGCCTAGATGAAAACAGCGCGAGTTATATGTAACATAACTTCATGTGTGT GTAACTTGCTATGATGCTATAATTTATTGTGTTATCCCCCCCCCCCCCGATATGTAGAACATAAAGCAAAAAAGAAAAAT ACATCATTTTTTTTGGCTTAATTGCAACTTTGGTCCCCGACGTTTACCAATGCCACGATTTTGGTCCCCCACCTAATTTA ATTACATGGATGGTCCCCGACGTTGTAGGCCGTGTGCAACGTTAGTCCTACCGTTTATTTCTTAATGGAGGAGGCTTACG TGGACGTCGAGTTGGAGAGAGAAATGAGGTATGAGGAGAGAGGGAAACACGTGAGTATCACGTGACCCTTATCTGAACCC ATTATACCTAAACCCCTGACCTCCCTAGAACGAAGAAGGTAATGCGATTTAGATCCCTAGGGTTTCAGATTTGGGTATAA TGGGTTCATATAAGATTCACGTGATACTCACGTGCTCCCCTCTCTTCTCAGATCTCTTTTTTCTCTCCAACTAGACGTCC ACGTAAGCCTCCTCCATTAAGAAATAAACGGTAGGACTAACGTTGCACGCAACCTACAACGTCGGGGACCATCCATGTAA TTAAATTAGGTGGGGGACCAAAATCGTGGCATTGGTAAACGTCGGGGACCAAAGTTGTAATTAAGCTTTTTTTTTTTTAA GTCTTGTAGGACACTTGACAACTACTTAAGGATAGTAATTGAATAATAGAAGCATGATTTCTGACGTGAGGCGTATAGCC CTTTCCAATTATAAAATGTTAATAGTAAATTCTCAATGATTGCACTTGTTTAGCTAAGTAAGATTGAAAATGTTAAAATA TACCTTCACTTGCTAATGGGTTTAAATATTTGATGCAGGTCTTTCAAGAAGTGCCAAATATGGGTTAACTATAGGTGTAG GAATACTTGGGCTATTGTGTCTAATTGGGCTTTCTACCTTTATCTGCGGCAAATTCAGGAGGAACACATATCGTCGAAGA AACATAGATTTTCCAATCACAATTTCCCTAGAGCCCATGCCATTTGCCACTGGGCTTGATGGTGCCACAATTGAGAAGTA CCCCAAGACTCTACTTGGGGAAAGTGGTCGCTTTTTGAAGCCTAATGACAATACATGTGCAATTTGTCTCTCTGAATATG AACCTAAAGAAACTTTGAGGAGCATACCTGAGTGCAACCATTATTTTCATGCAGATTGTATAGATCAGTGGCTCAAAATG AATGGGACATGCCCTTTGTGCAGGAATTCACCACCATCAGAGGCATCTTCCACAGTCACCCCTTCTTTTTCTTCATTATT ATCCCCCACTTCCTCATCTTCCTCTTCACACTAAATAGTCAAAATTTAAGGTTGAGTGCTAACATGAGCTGAACATCAAT GAGTTATAGTAACTTTACCTTATGATTCAATATCTAAATTATAGAAATTTATTATTCATAATTGCTTAACAGTTCAATGA CAAATTTTAACTTTCAGTAGTCCTACAAAAATAAACAAAAAGTTCTCAATAGGTGAGTTACTTAAATCTAGTTCATGGTT CAATCCCTGATTAATGTGTATCGAAAAAATT
CDS sequence (LotjaGi4g1v0435600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTTAGCCCTGTTCTATGTATTCTACACTCTTCTTTTCCATCTCCAAAGCACTAGAGGCAAACAATTTTGCAA CCCCATATCATGCGGTGATGTAGATATTAAATTTCCTTTCGGATTGAAAGGAGCTAATGATAATTGTAGCTACAGTCCGA GGTTTCAACTCTCTTGCAACAACCTCAGCCAAACCATTCTGAAGCTCCCAAATTCAGGGGACTTAATTGTGAAAAGCATT GATTACAGAGCCCAAACCATCCGAGTCAACGATCCAGAAGGTTGTCTACCGAACCGGTTCATGCACGATTGGAACCTCTC CGGTTCACCTTTCAAGCTAAACCCGATTATATACCAAAGCTATTACAATCTCACCTTCCTTCGTTGCCCAAACAACTCGA CCGGTTCATCGTCTTTCGGTTTAGCTTGTTTGAGCAATAAAGGGAAAAACAAAAACTCATCAGACACGGACATTAGCTCC TCAATGGTCTTGGTATCGTGGTCTCGGCCTATTGTCTCGTCACTGTCGCAACGATGCGAGGTGATTGGTTGGGGTCGTGT TCCTATTTCGTGGGCCGAGATGCCCATGTGGCCTTTCTGGCCTGATCTCAACAGTGATGTTCGGTTGGTGTGGACTGAAC CGTGGTGTGCGAACTGTGCGCTTGATGGTCAGGTATGTGGGTTCTCTAATGATAAGAAGAAAATCCTTGTTGACCAAAAG AGAAACAAGAAAAGCCTTCAAGTTCAATGCTACCCTAGTGCCTCTAGTAAAGGTCTTTCAAGAAGTGCCAAATATGGGTT AACTATAGGTGTAGGAATACTTGGGCTATTGTGTCTAATTGGGCTTTCTACCTTTATCTGCGGCAAATTCAGGAGGAACA CATATCGTCGAAGAAACATAGATTTTCCAATCACAATTTCCCTAGAGCCCATGCCATTTGCCACTGGGCTTGATGGTGCC ACAATTGAGAAGTACCCCAAGACTCTACTTGGGGAAAGTGGTCGCTTTTTGAAGCCTAATGACAATACATGTGCAATTTG TCTCTCTGAATATGAACCTAAAGAAACTTTGAGGAGCATACCTGAGTGCAACCATTATTTTCATGCAGATTGTATAGATC AGTGGCTCAAAATGAATGGGACATGCCCTTTGTGCAGGAATTCACCACCATCAGAGGCATCTTCCACAGTCACCCCTTCT TTTTCTTCATTATTATCCCCCACTTCCTCATCTTCCTCTTCACACTAA
Protein sequence (LotjaGi4g1v0435600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLALFYVFYTLLFHLQSTRGKQFCNPISCGDVDIKFPFGLKGANDNCSYSPRFQLSCNNLSQTILKLPNSGDLIVKSI DYRAQTIRVNDPEGCLPNRFMHDWNLSGSPFKLNPIIYQSYYNLTFLRCPNNSTGSSSFGLACLSNKGKNKNSSDTDISS SMVLVSWSRPIVSSLSQRCEVIGWGRVPISWAEMPMWPFWPDLNSDVRLVWTEPWCANCALDGQVCGFSNDKKKILVDQK RNKKSLQVQCYPSASSKGLSRSAKYGLTIGVGILGLLCLIGLSTFICGKFRRNTYRRRNIDFPITISLEPMPFATGLDGA TIEKYPKTLLGESGRFLKPNDNTCAICLSEYEPKETLRSIPECNHYFHADCIDQWLKMNGTCPLCRNSPPSEASSTVTPS FSSLLSPTSSSSSSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 6 | 396 | 391 | 5.2E-126 | – | |
| PANTHER | 6 | 396 | 391 | 5.2E-126 | – | |
| Phobius | 16 | 22 | 7 | - | – | |
| Phobius | 23 | 264 | 242 | - | – | |
| Pfam | 26 | 129 | 104 | 2.8E-13 | ||
| Phobius | 265 | 288 | 24 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| Phobius | 289 | 415 | 127 | - | – | |
| Gene3D | 313 | 391 | 79 | 5.2E-21 | ||
| SUPERFAMILY | 337 | 389 | 53 | 6.77E-21 | – | |
| Pfam | 342 | 386 | 45 | 6.9E-14 | ||
| CDD | 343 | 386 | 44 | 4.18708E-19 | – | |
| ProSiteProfiles | 344 | 386 | 43 | 12.843 | ||
| SMART | 344 | 385 | 42 | 1.9E-7 | ||
| MobiDBLite | 392 | 415 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polysaccharide binding | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
Expression pattern of LotjaGi4g1v0435600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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