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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0437800 |
| Transcript ID | LotjaGi4g1v0437800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit beta-1; TAIR: AT5G53480.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9FJD4|IMB1_ARATH Importin subunit beta-1; TrEMBL-Plants: tr|I1KPN2|I1KPN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0437800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81095241..81100251) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAAATTTTAACATTGGGGGCGTCTCTGCTTTTTCCCACTCTCTGCTAGGGTTTCAGAGTCGCCGCGCTTCTCTCTT CCTTCAACTCGCTCCTCACTCACTCACTGACTCACTGTTCTTCCATCACCGATTCCGTTCGTTAACTCGCCGTGAGTTCT TCTTCCCTCATTGATTTGCTATCTGAATCTCTAATTTACTTGTGTTTTTCTGATTGAATACTGTCACTGCTTTTGCTGCT GATCCGAGTTTGATACTAACTCACGCTTCGTGTTCTTAGTTGCTTTCGCTAATTTGGTTTTTTCATTTCAGGATCGGAAC CAGTTCATTTCGTAAGCTTCGTTTTTTGGTTTTGTTTTGTTCGTTTGAAATTTTGAATCCGTTTTTATTCAAATCGAAGT GTTTTTGCGATTTCCGATACAGTGTTTGGTTGACTGGTTAGGAAATGTAGGAAATGGATTTGAACCTAATCCATTTTGAA TTTTCGATCTATTGGTATTTGGTACCCCTGCACACTGTCATCAAGTAGGTCAAATCATGTGTTTTTGCTTTTTGGAATGC GTATTGTTTACATGGTGATATGGGGTTTATGGGAGGGTTTAGTCAATTTCTTGTTAGTAGGACACTCTTTGTATCTGTAG ACTGTCGATGGAATGGTTGTGTGAGTGAGTGTGTTTTGGTGAAATAATGAGGACTTGCTTTAGGAGCAAACTTTTGTCTG TTACTCAGTTTTATGGCCTATACATGATACGTCACATACCGTTTACAGCTTTCATATCTTGTGCAACTTATCTGTCGAGC TGAAACCTGTTTGCTTATTATTTGTTGCACGTCGAATTACTTTGTGTTTTGTCGTTAATGCACATCGAATCACTGTGTTT TGTCGTTAATGCACACCGAATCATTGTGTTTTGTCGTTAACGCTACATTTATTTAAATGTTCTTTTGTATCTTTTCTCCC TGTGCTATGTCCTTAACACTCCAGCCTTAATATGATGTCATGCATTTGGATTTAGGGCCCTTTTTTGTGCGTTTAATTTC TCATGTGGTTAAGTTTAGTTTGTCCATTGAGCCTGTTGTGACTTTATTAAGTACCCTGCATATGTTATGATTGGTAGTTT GTTTTGATGGATTGTTTTCTAATCCTTTTTTTAATGTGATTTGGACCTTTATGTTCCAGGTTCAGATGGCCATGGAGGTT ACTCAAATTCTTTTAAATGCGCAAGCAGTGGATGGCGCTGTCAGGAAACAAGCTGAAGATAACTTGAAACAGTTTCAGGA ACAGAATCTTCCAAGTTTCTTGTATTCTCTTGCTGGGGAATTGGCAAACGATGACAAACCTGCGGAGAGCAGGAAGCTGG CAGGTTTAATTCTGAAGAATGCTCTGGATGCGAAGGAACAGCACAGAAAGGTGGAACTTATTCAAAGATGGCTGTCTCTC GACCCAGCTTTGAAAGCCCAGATTAAAGCATTCTTGTTGAGGACCCTTTCTTCTCTTTCTCTCGATGCTCGATCAACCGC GTCACAAGTCATTGCAAAAGTTGCTGGTATCGAATTGCCTCACAAGGAATGGCCTGAATTGGTGGGGTCCCTTTTGTCAA ACATTCATCAGCTGCCTGCCCCTACAAAGCAGGCAACTCTTGAGACCCTCGGGTACATTTGTGAAGAAGTGTCCCCGGAT GTGGTAGAGCAGGATCATGTAAATAAGATACTCACTGCGGTTGTTCAGGGTATGAATTCTACAGAAGAAAACAATGATGT CAGGCTTGCTGCGATACGGGCATTGTACAATGCATTGGGTTTTGCTCAGGCAAATTTTTCTAATGATATGGAGCGTGATT ACATTATGAGAATTGTTTGTGAGACCACTCTTTCTCCTGAACCGAAGATCCGGCGAGCAGCTTTTGAGTGTTTGGTAGCT ATTTCTTCAACATACTATGAAAAGTTGGCTCCTTATATCCAAGACATCTTTAACATCACTGCCAAGGCTGTAAGGGAAGA TGAGGAGCCTGTTGCGCTTCAGGCAATCGAGTTCTGGAGCTCCATATGTGATGAAGAAATTGATATATTAGAAGAATATG GAGGTGAATTTAGTGGGGATTCAGACATTCCTTGCTTTTACTTTATTAAGCAAGCACTTGCATTTCTTGTTCCGATGCTA CTGGAGACCTTGCTAAAGCAACAAGAGGATCAAGATCAGGATGAAGGAGCTTGGAACATTGCTATGGCTGGCGGTACATG TTTGGGGTTGGTTGCACGAACAGTTGGTGATGATATTGTGCCTCTGGTGATGCCATTTATTCAAGAGAACATAACTTTAC CAGATTGGAGGCAAAGGGAAGCTGCAACTTATGCATTCGGCTCCATTCTGGAAGGCCCATCACCTGACAAACTTGTGCCA CTTGTGAATATGGCTTTGAACTTCATGCTCACTGCACTGATGAAGGACCCAAATAATCATGTGAAGGACACAACTGCATG GACTCTTGGGCGGATGTTTGAGTTTTTGCATGGGTCAGCTTTAGATACTCCCATCATCACTCCAGCAAATTGCCAACAGA TTATTACTGTGCTTATTCAGAGCATGAAAGATGCTCCAAATGTTGCTGAGAAGGCATGTGGTGCTCTTTACTTTCTGGCT CAAGGCTATGAGGATGCTGGATCTGCATCCTCTCCACTGTCCCCCTTCTTTCAAGAAATTGTTCAATCCCTTCTCACAGT AACTCACAGAGAGGATGCTGGAGAGTCCCGCCTTAGAACAGCAGCCTATGAAGCCTTAAATGAGGTAGTGAGGTGTTCTA ATGATGAAACAGCTCCACTGGTTGTACAACTGGCTCCTATCATCATGGCGGAGCTCCACCAAACTCTTGAGAATCAGGGC TCATCTGATGAGGGGCTGAGTGAGTTACAGGGCCTTCTCTGCGGTTGCTTGCAAGTCATCATACAGAAGTTAGGATCATC TGAACCTACGAAATATCATTTCATGCAGTACGCTGACCAAATTATGAGTTTATTCTTAAGAGTGTTTGCTTCTCGAAGTA CAACAGCTCATGAGGAGGCTATGCTTGCCATCGGAGCTTTGGCCTATGCAACTGGCCCTGATTTTGTTAAATATATGCCA GAGTTTTACAAGTATTTGGAGATGGGCCTCCAAAATTTTGAGGACTACCAGGTTTGTGCTATTACAGTGGGCGTGGTTGG TGATGTATGCAGGGCTTTGGAGGAGAAAATATTACCGTATTGTGATGGGATAATGACACAGCTTCTAAAGGACTTGTCAA GCAATCAGTTGCATCGGTCCGTTAAGCCTCCAATTTTTTCATGTTTTGGTGACATTGCCTTGGCAATTGGAGAAAACTTT GAAAAGTACTTGTTATATGCTATGCCTATGCTTCAGAGTGCTGCTGAGCTCTCTGCTCATACTACCAATGCTGATGATGA CATGACAGAGTACACAAATTCATTGAGAAATGGTATTCTAGAGGCATACTCGGGCATCCTCCAAGGATTTAAAGGTTCTC CGAAGACCCAGCTTTTGATGCCTTTTGCTACTCATGTGCTGCAATTCTTGGACAGTTTGTACGCGGAGAAGGATATGTAA GTGAATTTCTGTCAATTCTGTATGAATTTTGGTTCTAAAAGTTTTGTAATTTTTATCTTAATCAATGGCCGCTCCTTCTC CTTTCAGGGATGATGTGGTGACTAAGACAGCAATCGGTGTGCTTGGAGATTTAGCTGATACTTTGGGAAGTAATGCCGGC CCCTTGATTCAGCAGTCTGTGTCCAGCAAAGACTTCCTCAAGGATTGTTTATCATCTGATGACCATTTGGTGAAGGAATC TGCTGAATGGGCCAAGTTGGCAATCAGTCGAGCAATCCAATTTTGAAGCTATTGCAATTTCATGGGTCTAGTTCTTTGCA TACATCTATCTGCATTTGTTGCTTGGGGGTCTCAACTGCATGCCATGAGTCGGGTCATCACCAGTTTTGGGCACAGGTGT TTCGGTCCTTTTGGCTGTCTGCATTTCAAGTCACCAACATGGAGTCATCTTTTTCATATTTTTCTTTTTCCAATTTATTT TTCTGCATTGCTGTGGAGGTAGTCCGTGGGTGGTGACCAATCTTCCTGCTAACTTGGCAGAAAAGATTTGGTTCTTTTAT ACAGGAGGAAAAACAGGGTTAAATGGGGTTTGAACTAGAAACGAGATATCCCATGATATCTGCCAAATATATTGGGCTTT CATGATTTATTATTTGAATGTTTTGGAGTCTTTGGTGGTGGTCCAGAAATATTATGTCCCTTTTTTTCTTTCTTTTACTA TTGGCTGTAGAGTGAAACAATCATCTTAGTCCATCCATGTGTTTGGAACAAAGGTAATGCTACATACTTTAGCCGTTCCT TGAAATTACTCATAATTTTGTGTCTCCATCAAGTTTTATAATGTAGTTCATATGTTTAATGTCATAACGTGTCATGGGCC GTATTATTATGATTGCATCCTAACTACACGCTTGGTTTTGATGCGTGTCAGTTTGTGGTTGCTTTTTTTGTTGTCAGTTA GATCATGATTTTATACTGTGTGGAGGGAATTGTGTCTTTACTGTTAAAGACCTTCACCCTTTTGTGGTGGCAGAGGTTCT TACGTGGTCGCTTTTCATGATTGAAATTTCGTGGCCAAGCAATTTGTTAGTTCGGACTCGGGGATGGAATTCGATGCTGA TCCAGTTGTTAATGATTAATGAAGTAGATGGATCTATGTGAAGATATACTAGGTAGATGTTAATGTGAACAAAGCTCTCG TTTTTTGCAGTGCATTTTGTCTTGAAAAATTCATTGTCATGATGATATGCATGTTTGTCCTGTGTATTCTAATTTTTTTT TTTGCTTCTGCTGTTTCTTATTTGATTTTAAATGTTATTTTGTCGAGTAGAGGACATGAGAAACAATATATTTGCAAATT ACAGGTTTTCATTTGTTCTCGTTTTTGTTTTGTACTTTTAGATAATACTGC
CDS sequence (LotjaGi4g1v0437800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGAGGTTACTCAAATTCTTTTAAATGCGCAAGCAGTGGATGGCGCTGTCAGGAAACAAGCTGAAGATAACTT GAAACAGTTTCAGGAACAGAATCTTCCAAGTTTCTTGTATTCTCTTGCTGGGGAATTGGCAAACGATGACAAACCTGCGG AGAGCAGGAAGCTGGCAGGTTTAATTCTGAAGAATGCTCTGGATGCGAAGGAACAGCACAGAAAGGTGGAACTTATTCAA AGATGGCTGTCTCTCGACCCAGCTTTGAAAGCCCAGATTAAAGCATTCTTGTTGAGGACCCTTTCTTCTCTTTCTCTCGA TGCTCGATCAACCGCGTCACAAGTCATTGCAAAAGTTGCTGGTATCGAATTGCCTCACAAGGAATGGCCTGAATTGGTGG GGTCCCTTTTGTCAAACATTCATCAGCTGCCTGCCCCTACAAAGCAGGCAACTCTTGAGACCCTCGGGTACATTTGTGAA GAAGTGTCCCCGGATGTGGTAGAGCAGGATCATGTAAATAAGATACTCACTGCGGTTGTTCAGGGTATGAATTCTACAGA AGAAAACAATGATGTCAGGCTTGCTGCGATACGGGCATTGTACAATGCATTGGGTTTTGCTCAGGCAAATTTTTCTAATG ATATGGAGCGTGATTACATTATGAGAATTGTTTGTGAGACCACTCTTTCTCCTGAACCGAAGATCCGGCGAGCAGCTTTT GAGTGTTTGGTAGCTATTTCTTCAACATACTATGAAAAGTTGGCTCCTTATATCCAAGACATCTTTAACATCACTGCCAA GGCTGTAAGGGAAGATGAGGAGCCTGTTGCGCTTCAGGCAATCGAGTTCTGGAGCTCCATATGTGATGAAGAAATTGATA TATTAGAAGAATATGGAGGTGAATTTAGTGGGGATTCAGACATTCCTTGCTTTTACTTTATTAAGCAAGCACTTGCATTT CTTGTTCCGATGCTACTGGAGACCTTGCTAAAGCAACAAGAGGATCAAGATCAGGATGAAGGAGCTTGGAACATTGCTAT GGCTGGCGGTACATGTTTGGGGTTGGTTGCACGAACAGTTGGTGATGATATTGTGCCTCTGGTGATGCCATTTATTCAAG AGAACATAACTTTACCAGATTGGAGGCAAAGGGAAGCTGCAACTTATGCATTCGGCTCCATTCTGGAAGGCCCATCACCT GACAAACTTGTGCCACTTGTGAATATGGCTTTGAACTTCATGCTCACTGCACTGATGAAGGACCCAAATAATCATGTGAA GGACACAACTGCATGGACTCTTGGGCGGATGTTTGAGTTTTTGCATGGGTCAGCTTTAGATACTCCCATCATCACTCCAG CAAATTGCCAACAGATTATTACTGTGCTTATTCAGAGCATGAAAGATGCTCCAAATGTTGCTGAGAAGGCATGTGGTGCT CTTTACTTTCTGGCTCAAGGCTATGAGGATGCTGGATCTGCATCCTCTCCACTGTCCCCCTTCTTTCAAGAAATTGTTCA ATCCCTTCTCACAGTAACTCACAGAGAGGATGCTGGAGAGTCCCGCCTTAGAACAGCAGCCTATGAAGCCTTAAATGAGG TAGTGAGGTGTTCTAATGATGAAACAGCTCCACTGGTTGTACAACTGGCTCCTATCATCATGGCGGAGCTCCACCAAACT CTTGAGAATCAGGGCTCATCTGATGAGGGGCTGAGTGAGTTACAGGGCCTTCTCTGCGGTTGCTTGCAAGTCATCATACA GAAGTTAGGATCATCTGAACCTACGAAATATCATTTCATGCAGTACGCTGACCAAATTATGAGTTTATTCTTAAGAGTGT TTGCTTCTCGAAGTACAACAGCTCATGAGGAGGCTATGCTTGCCATCGGAGCTTTGGCCTATGCAACTGGCCCTGATTTT GTTAAATATATGCCAGAGTTTTACAAGTATTTGGAGATGGGCCTCCAAAATTTTGAGGACTACCAGGTTTGTGCTATTAC AGTGGGCGTGGTTGGTGATGTATGCAGGGCTTTGGAGGAGAAAATATTACCGTATTGTGATGGGATAATGACACAGCTTC TAAAGGACTTGTCAAGCAATCAGTTGCATCGGTCCGTTAAGCCTCCAATTTTTTCATGTTTTGGTGACATTGCCTTGGCA ATTGGAGAAAACTTTGAAAAGTACTTGTTATATGCTATGCCTATGCTTCAGAGTGCTGCTGAGCTCTCTGCTCATACTAC CAATGCTGATGATGACATGACAGAGTACACAAATTCATTGAGAAATGGTATTCTAGAGGCATACTCGGGCATCCTCCAAG GATTTAAAGGTTCTCCGAAGACCCAGCTTTTGATGCCTTTTGCTACTCATGTGCTGCAATTCTTGGACAGTTTGTACGCG GAGAAGGATATGGATGATGTGGTGACTAAGACAGCAATCGGTGTGCTTGGAGATTTAGCTGATACTTTGGGAAGTAATGC CGGCCCCTTGATTCAGCAGTCTGTGTCCAGCAAAGACTTCCTCAAGGATTGTTTATCATCTGATGACCATTTGGTGAAGG AATCTGCTGAATGGGCCAAGTTGGCAATCAGTCGAGCAATCCAATTTTGA
Protein sequence (LotjaGi4g1v0437800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMEVTQILLNAQAVDGAVRKQAEDNLKQFQEQNLPSFLYSLAGELANDDKPAESRKLAGLILKNALDAKEQHRKVELIQ RWLSLDPALKAQIKAFLLRTLSSLSLDARSTASQVIAKVAGIELPHKEWPELVGSLLSNIHQLPAPTKQATLETLGYICE EVSPDVVEQDHVNKILTAVVQGMNSTEENNDVRLAAIRALYNALGFAQANFSNDMERDYIMRIVCETTLSPEPKIRRAAF ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGGEFSGDSDIPCFYFIKQALAF LVPMLLETLLKQQEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIQENITLPDWRQREAATYAFGSILEGPSP DKLVPLVNMALNFMLTALMKDPNNHVKDTTAWTLGRMFEFLHGSALDTPIITPANCQQIITVLIQSMKDAPNVAEKACGA LYFLAQGYEDAGSASSPLSPFFQEIVQSLLTVTHREDAGESRLRTAAYEALNEVVRCSNDETAPLVVQLAPIIMAELHQT LENQGSSDEGLSELQGLLCGCLQVIIQKLGSSEPTKYHFMQYADQIMSLFLRVFASRSTTAHEEAMLAIGALAYATGPDF VKYMPEFYKYLEMGLQNFEDYQVCAITVGVVGDVCRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALA IGENFEKYLLYAMPMLQSAAELSAHTTNADDDMTEYTNSLRNGILEAYSGILQGFKGSPKTQLLMPFATHVLQFLDSLYA EKDMDDVVTKTAIGVLGDLADTLGSNAGPLIQQSVSSKDFLKDCLSSDDHLVKESAEWAKLAISRAIQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 869 | 869 | 0.0 | ||
| PANTHER | 2 | 867 | 866 | 0.0 | ||
| PANTHER | 2 | 867 | 866 | 0.0 | ||
| SUPERFAMILY | 3 | 859 | 857 | 1.49E-160 | ||
| SMART | 23 | 103 | 81 | 2.1E-7 | ||
| Pfam | 23 | 102 | 80 | 1.6E-12 | ||
| ProSiteProfiles | 23 | 103 | 81 | 17.627 | ||
| Pfam | 381 | 437 | 57 | 1.8E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. | ||
| Molecular function | Ran GTPase binding | Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. |
Expression pattern of LotjaGi4g1v0437800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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