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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0463000 |
| Transcript ID | LotjaGi4g1v0463000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|K7KRF4|K7KRF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0463000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83314501..83317577) extracted from Lotus japonicus Gifu genome v1.2.
TCTCGATAGCTTATTGCCTTATTCCATCTCTTCACACAACTTACAAATGACATTATTTGGATTAATTTTAAAACAAAAAT TATTTTGAGGGACCAATTACAAATGAATTTTTTTTATAGGGGCTAACTAAATCTCTCTTTATCTGTCATAGACTAAAAAC AATTGATTAAGCTTACATCCTTTTACTAGTGGTTTGAGGGTGAAGGAAGGAGTAGGAGTAATGGGTAACTGAAAACGGTG GTGTACTGGGAAGAAGTTAAGTTTGCGTCAACTAGCAAAGGTATGCGCGGGAACTATCACTTGAGATTCGCAGTGAGACA ATTACATACGAAACCTACCTGCAACTTTCAAATTCAACTACCTAGGCCAACATCATCCTCCCAAATTAGAGACAGAGAAC AAGACACAGTTCAATGGAACAAGGTCATTTCTACCCACATGCGCAATGGCCACTGCGATTCTGCTCTCCGTGTCTTCAAC ACCATGCCTCGTCGAAGCTCTGTCTCCTACAATGCCATGATATCTGGCTACTTGAAGAACGCCAAGTTCACCCTTGCAAG AGACCTGTTTGATAAAATGCCTCAGAGGGACTTGTTTTCCTGGAATTTAATGCTCACTGGGTATGTCAGGAATCACAGAC TTGGCGAGGCTCGCAAGTTGTTTGATTTAATGCCTCAAAAGGATGTTGTTTCCTGGAATGCCATGTTGTCCGGCTATGTC AGGAGTGGGTACGTTCATGAGGCAAGAGAAGTTTTTGATAAGATGCCTCATAAGAATTCCATCTCCTGGAATGGGTTGCT CTCAGCATATGTTCAGAATGGGAGACTTGAGGAGGCTCGCTGGTTGTTTGAGTCAAAGTCAGACTGGGATTTGGTTTCTT GGAATTGTTTGATGGGTGGTTATGTGAAGGCGAAGATGTTAGGTGATGCTAGACAGCTTTTTGACCAAATGCCTGTTAGG GATGTAATCTCCTGGAATACCATCATTTCAGGTTATGCCCAGGATGGAGATTTGTCACAGGCTAGGAGATTGTTTGAGAA GTCTCCAACCAGGGATGTTTTCACGTGGAAAGCACTGGTCTGTGCATATGTGCAGAACGGGATGTTGAATGAAGCGAGAA GATTTTTCGATGAAATGCCGGAAAAAATAGAGATATCATACAATGCAATGATTGCTGGTTATGTGCAATACAAGAAAATG GAAATGGCAAGGGAATTATTTGAGGCAATGCCTTGTCAGGGAACAGGTTCATGGAATATTATGATAAGTGGATATGCTCA GAATGGTGATATAGTTCAAGCTAGGAACTTGTTTGATTTGATGCCTCGGCGTGATTGTGTATCTTGGGCGGCTATTATTG CTGGTTATGCGCAGACTGGTCACTATGAAGAAGCTCTGAAATTGCTTGTGGAGATGAAACGGGATGGGGAAAGTTTAAAT AGATCTATCTTTTGTTGTGCTTTAAGCACATGTGCTGATATTGCTGCTTTGGAGCTGGGGAAACAAGTTCATGGGCAGGT GGTGAAGACAGGGTATGAGAATGGTTGTTTAGTGGGGAATGCTCTTGTTGGAATGTATTGTAAATGTGGCAGCATAGATG AAGCTTATAATGTGTTCGAAAGAATACAAAACAAAGATATCATTTCCTGGAACACATTGTTAGCTGGTTATGCTAGGCAT GGATTTGGCAGACAGGCTTTAATATTGTTTGATTCAATGAAGATAGCAGGTGTTAAACCCGATGAGATTACCATGGTATG TATGTTTTATGTATTTAATGCATTTCTTATGCTTGAGTGAGTTCCTTGTCTAATTGTGTTGATTGGAAGAACTACTATCT TCAGTGCTTTAGATTTCACTTCATTGTATTTTAATTTAGACATAGCTGGTTTACAACTTTTTAATTTTCTGATTAAAGAG CTGATGGTATTGTATGCTTAATTTAGCCATAAAATCATACATGTTGTGTGCTTTTAAATTGAGGTGTTAATGATAATATT GTTCTATCTGCAATGCAGTAGCATACTAGCATGCCAGTTGACTGTTTTCTACTAGTAACACTATTCTGCTTATTCTTCTT CTAATCATATATTCATATTTCAGGTTGGAGTTCTGTCAGCATGCAGTCACACGGGCTTGATAGACAGAGGAGCAGAATAT TTTTATTCAATGAATAAGGATTATGGTATAACACCAAATTCAAAACATTATACTTGCATGATTGATCTTCTTGGTAGAGC TGGCCGCCTAGAAGAAGCACAAAACTTAATGAGAATCATGCCCTTTGAGCCAGATGCTGCAACATGGGGAGCTCTACTAG GAGCAAGCCGGATTCATGGCAATACTGAACTTGGGGAGAAGGCTGCTGAGATGGTTTTTAAGAAGGAAACCCACAACTCA GGAATGTATGTCCTTCTTTCAAATTTATATGCTGCTTCAGGTAGATGGGTTGATGCTGGTAAGATGAGATTGAAAATGAG GGAAGCTGGTGTTCAGAAAATACCAGGGTGTAGTTGGGTTGAGATACAAAACAAGATTCATTCATTCACAGTAGGGGATT GTTTTCACACAGAAAAAGATAAAATATATGCCTTCTTAGAAGAGTTAGATCTTAAAATGAAGCGTGAGGGGTATGTTTCT TCAGTGAAATTGGTTTTGCATGATGTGGAAGAGGCAGAGAAGGAGCGTATGCTCAAGTATCACAGTGAGAAATTAGCTGT AGCATTTGGAATTCTGAGTATACCGGCTGGCAGGCCAATTCGTGTCATGAAAAACTTGCGTGTGTGTGAGGACTGTCATA ATGCTATCAAACACATATCCAAGATTGTTGGAAGGTTGATAATCTTAAGGGATTCTCATCGCTTTCACCACTTCAGTGAG GGTATTTGTTCTTGTGGGGATTATTGGTAAAAGTGGTGAAATATGGTGAAAATTCACCTAGGTATAAATTGTATCCTCCC TTGAGTTAGCTTAAGATAAATTATACTCTTTTCATATGTAAATAATTAATTACATTGTTCTCTTCTTTATTACAAATAGG AAAAATATGTTTTCTTTTCTTAAAAGGTGAATTTTCT
CDS sequence (LotjaGi4g1v0463000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCGGGAACTATCACTTGAGATTCGCAGTGAGACAATTACATACGAAACCTACCTGCAACTTTCAAATTCAACTACC TAGGCCAACATCATCCTCCCAAATTAGAGACAGAGAACAAGACACAGTTCAATGGAACAAGGTCATTTCTACCCACATGC GCAATGGCCACTGCGATTCTGCTCTCCGTGTCTTCAACACCATGCCTCGTCGAAGCTCTGTCTCCTACAATGCCATGATA TCTGGCTACTTGAAGAACGCCAAGTTCACCCTTGCAAGAGACCTGTTTGATAAAATGCCTCAGAGGGACTTGTTTTCCTG GAATTTAATGCTCACTGGGTATGTCAGGAATCACAGACTTGGCGAGGCTCGCAAGTTGTTTGATTTAATGCCTCAAAAGG ATGTTGTTTCCTGGAATGCCATGTTGTCCGGCTATGTCAGGAGTGGGTACGTTCATGAGGCAAGAGAAGTTTTTGATAAG ATGCCTCATAAGAATTCCATCTCCTGGAATGGGTTGCTCTCAGCATATGTTCAGAATGGGAGACTTGAGGAGGCTCGCTG GTTGTTTGAGTCAAAGTCAGACTGGGATTTGGTTTCTTGGAATTGTTTGATGGGTGGTTATGTGAAGGCGAAGATGTTAG GTGATGCTAGACAGCTTTTTGACCAAATGCCTGTTAGGGATGTAATCTCCTGGAATACCATCATTTCAGGTTATGCCCAG GATGGAGATTTGTCACAGGCTAGGAGATTGTTTGAGAAGTCTCCAACCAGGGATGTTTTCACGTGGAAAGCACTGGTCTG TGCATATGTGCAGAACGGGATGTTGAATGAAGCGAGAAGATTTTTCGATGAAATGCCGGAAAAAATAGAGATATCATACA ATGCAATGATTGCTGGTTATGTGCAATACAAGAAAATGGAAATGGCAAGGGAATTATTTGAGGCAATGCCTTGTCAGGGA ACAGGTTCATGGAATATTATGATAAGTGGATATGCTCAGAATGGTGATATAGTTCAAGCTAGGAACTTGTTTGATTTGAT GCCTCGGCGTGATTGTGTATCTTGGGCGGCTATTATTGCTGGTTATGCGCAGACTGGTCACTATGAAGAAGCTCTGAAAT TGCTTGTGGAGATGAAACGGGATGGGGAAAGTTTAAATAGATCTATCTTTTGTTGTGCTTTAAGCACATGTGCTGATATT GCTGCTTTGGAGCTGGGGAAACAAGTTCATGGGCAGGTGGTGAAGACAGGGTATGAGAATGGTTGTTTAGTGGGGAATGC TCTTGTTGGAATGTATTGTAAATGTGGCAGCATAGATGAAGCTTATAATGTGTTCGAAAGAATACAAAACAAAGATATCA TTTCCTGGAACACATTGTTAGCTGGTTATGCTAGGCATGGATTTGGCAGACAGGCTTTAATATTGTTTGATTCAATGAAG ATAGCAGGTGTTAAACCCGATGAGATTACCATGGTTGGAGTTCTGTCAGCATGCAGTCACACGGGCTTGATAGACAGAGG AGCAGAATATTTTTATTCAATGAATAAGGATTATGGTATAACACCAAATTCAAAACATTATACTTGCATGATTGATCTTC TTGGTAGAGCTGGCCGCCTAGAAGAAGCACAAAACTTAATGAGAATCATGCCCTTTGAGCCAGATGCTGCAACATGGGGA GCTCTACTAGGAGCAAGCCGGATTCATGGCAATACTGAACTTGGGGAGAAGGCTGCTGAGATGGTTTTTAAGAAGGAAAC CCACAACTCAGGAATGTATGTCCTTCTTTCAAATTTATATGCTGCTTCAGGTAGATGGGTTGATGCTGGTAAGATGAGAT TGAAAATGAGGGAAGCTGGTGTTCAGAAAATACCAGGGTGTAGTTGGGTTGAGATACAAAACAAGATTCATTCATTCACA GTAGGGGATTGTTTTCACACAGAAAAAGATAAAATATATGCCTTCTTAGAAGAGTTAGATCTTAAAATGAAGCGTGAGGG GTATGTTTCTTCAGTGAAATTGGTTTTGCATGATGTGGAAGAGGCAGAGAAGGAGCGTATGCTCAAGTATCACAGTGAGA AATTAGCTGTAGCATTTGGAATTCTGAGTATACCGGCTGGCAGGCCAATTCGTGTCATGAAAAACTTGCGTGTGTGTGAG GACTGTCATAATGCTATCAAACACATATCCAAGATTGTTGGAAGGTTGATAATCTTAAGGGATTCTCATCGCTTTCACCA CTTCAGTGAGGGTATTTGTTCTTGTGGGGATTATTGGTAA
Protein sequence (LotjaGi4g1v0463000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGNYHLRFAVRQLHTKPTCNFQIQLPRPTSSSQIRDREQDTVQWNKVISTHMRNGHCDSALRVFNTMPRRSSVSYNAMI SGYLKNAKFTLARDLFDKMPQRDLFSWNLMLTGYVRNHRLGEARKLFDLMPQKDVVSWNAMLSGYVRSGYVHEAREVFDK MPHKNSISWNGLLSAYVQNGRLEEARWLFESKSDWDLVSWNCLMGGYVKAKMLGDARQLFDQMPVRDVISWNTIISGYAQ DGDLSQARRLFEKSPTRDVFTWKALVCAYVQNGMLNEARRFFDEMPEKIEISYNAMIAGYVQYKKMEMARELFEAMPCQG TGSWNIMISGYAQNGDIVQARNLFDLMPRRDCVSWAAIIAGYAQTGHYEEALKLLVEMKRDGESLNRSIFCCALSTCADI AALELGKQVHGQVVKTGYENGCLVGNALVGMYCKCGSIDEAYNVFERIQNKDIISWNTLLAGYARHGFGRQALILFDSMK IAGVKPDEITMVGVLSACSHTGLIDRGAEYFYSMNKDYGITPNSKHYTCMIDLLGRAGRLEEAQNLMRIMPFEPDAATWG ALLGASRIHGNTELGEKAAEMVFKKETHNSGMYVLLSNLYAASGRWVDAGKMRLKMREAGVQKIPGCSWVEIQNKIHSFT VGDCFHTEKDKIYAFLEELDLKMKREGYVSSVKLVLHDVEEAEKERMLKYHSEKLAVAFGILSIPAGRPIRVMKNLRVCE DCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 34 | 192 | 159 | 9.3E-39 | ||
| ProSiteProfiles | 41 | 71 | 31 | 8.725 | ||
| SUPERFAMILY | 44 | 191 | 148 | 2.58E-6 | ||
| Pfam | 45 | 71 | 27 | 0.068 | ||
| ProSiteProfiles | 72 | 106 | 35 | 10.578 | ||
| Pfam | 74 | 103 | 30 | 5.6E-6 | ||
| TIGRFAM | 74 | 103 | 30 | 3.4E-6 | ||
| Pfam | 105 | 134 | 30 | 1.6E-5 | ||
| TIGRFAM | 105 | 135 | 31 | 1.5E-5 | ||
| ProSiteProfiles | 107 | 133 | 27 | 6.719 | ||
| PANTHER | 114 | 191 | 78 | 3.7E-124 | – | |
| ProSiteProfiles | 134 | 168 | 35 | 11.816 | ||
| Pfam | 136 | 164 | 29 | 2.6E-8 | ||
| TIGRFAM | 136 | 165 | 30 | 2.0E-7 | ||
| Pfam | 167 | 190 | 24 | 3.6E-5 | ||
| ProSiteProfiles | 169 | 195 | 27 | 5.831 | ||
| Gene3D | 193 | 254 | 62 | 1.5E-15 | ||
| ProSiteProfiles | 196 | 230 | 35 | 10.622 | ||
| TIGRFAM | 198 | 226 | 29 | 9.4E-7 | ||
| Pfam | 198 | 226 | 29 | 9.8E-6 | ||
| PANTHER | 200 | 290 | 91 | 3.7E-124 | – | |
| Pfam | 227 | 253 | 27 | 4.6E-6 | ||
| TIGRFAM | 229 | 253 | 25 | 2.2E-4 | ||
| ProSiteProfiles | 231 | 257 | 27 | 6.215 | ||
| Gene3D | 255 | 319 | 65 | 1.4E-13 | ||
| ProSiteProfiles | 258 | 288 | 31 | 10.775 | ||
| Pfam | 260 | 288 | 29 | 6.4E-6 | ||
| TIGRFAM | 260 | 287 | 28 | 1.7E-5 | ||
| ProSiteProfiles | 289 | 319 | 31 | 8.144 | ||
| Pfam | 291 | 320 | 30 | 8.0E-6 | ||
| TIGRFAM | 291 | 320 | 30 | 1.7E-5 | ||
| PANTHER | 294 | 347 | 54 | 3.7E-124 | – | |
| ProSiteProfiles | 320 | 350 | 31 | 9.449 | ||
| Gene3D | 320 | 403 | 84 | 8.0E-19 | ||
| TIGRFAM | 323 | 353 | 31 | 6.3E-8 | ||
| Pfam | 323 | 352 | 30 | 2.2E-7 | ||
| PANTHER | 339 | 406 | 68 | 3.7E-124 | – | |
| ProSiteProfiles | 351 | 385 | 35 | 11.203 | ||
| Pfam | 353 | 382 | 30 | 1.2E-6 | ||
| TIGRFAM | 353 | 386 | 34 | 1.6E-6 | ||
| ProSiteProfiles | 386 | 420 | 35 | 5.196 | ||
| PANTHER | 390 | 617 | 228 | 3.7E-124 | – | |
| Gene3D | 404 | 517 | 114 | 1.3E-25 | ||
| ProSiteProfiles | 421 | 451 | 31 | 7.87 | ||
| TIGRFAM | 426 | 453 | 28 | 0.0024 | ||
| Pfam | 451 | 499 | 49 | 4.9E-10 | ||
| ProSiteProfiles | 452 | 486 | 35 | 11.805 | ||
| TIGRFAM | 454 | 488 | 35 | 2.6E-5 | ||
| ProSiteProfiles | 487 | 522 | 36 | 7.366 | ||
| Gene3D | 518 | 697 | 180 | 1.1E-14 | ||
| Pfam | 519 | 550 | 32 | 7.2E-6 | ||
| ProSiteProfiles | 523 | 553 | 31 | 8.309 | ||
| ProSiteProfiles | 589 | 623 | 35 | 7.772 | ||
| Pfam | 625 | 748 | 124 | 7.8E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0463000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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