Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0004700 |
| Transcript ID | LotjaGi5g1v0004700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-1; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|A0A151UDU8|A0A151UDU8_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0004700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1113383..1119484) extracted from Lotus japonicus Gifu genome v1.2.
ACCTTACCGACAGCAAGTGCCATGTCAGTCCATGTTCTGTGGATCAAGTGGCCGTTTATGATGGTAAAGATTGGCCACTG GTTTTAATGCACCTTTATTATTGCATTGTGTCATCATCACAATAATAGCATATACAGTTCCTTCTCTTTCCTTTCTACTT TCTTCTTTCCCAGGCTCAGAAAGTGAGTTGAGTTCACTAATCCACAACAAGTGAGTATTTGTTGAGCACGTTAAGTTTGG AAGGTTCCACTTTGGATAAACTTTCTTTTCTTTTTTTTCTTTTCTTTTCCACATTTTGTACAAATATACTTTCAGGTGGT GGTACTGTTATTTTGACCAAGATATTCAAGATGGGTATTTTGAGTACCATAGCTAGTTTTTTGGGATTTGGAATGGGAAC TTCACTTGGACTGGTGATTGGCTACTATTTTTTCATATACTTCCAACCAACACATGTCAAGGTTAGTTTCTTCAATCTCT CATTTTTCTATGTTAGGATTCAGGTTAAGCTTAACTCTACCAAAAAAACTAGCTCGTAAAACAATCCTCACTTCCAAGCT AGCTTTTTGTGTGGAGTTAGGTCTAATCTGAATTCCAAATCTCTAAACTGTTTTCTTAGTTACTGTTTCTTAAAAAATTT GGACTGCACATGTAAACTTTGAACTTTATATCCTTTTCATCCTGCTTTTGTTTGCTTTGCTGAATTATGATTTACTGCAT AAGTAGCTGTTACTATTATCTTGTGTTAAGCTAACATTTTCTGGTCTTTACCTTTTGAAGATTGTCCATTCCTTCTTCTT TAGCATTTTGGAATGAGAAATAAAATTGTGTTCTTTCTGTTTTATTAATTTCTTGAAGAGTTATAAGCTGATTCCAACTG AGTAATTTAACATTGTGAGTAGAAAGAGTTGTGTTCCCTTTTAGTTATTGTCTTACTCTTCATGCTTGATTTCAGGATCA AACAGTTCAACCTTTGGCCGAGCAAGATTCTAAAACTCTGCAACAGTTGATTCCTGAGATACCCTCTTGGATTAAAAATC CAGACTATGATCGCGTAGGTTATTACATGGAAAATTAAAAGTGTTTATCTTGGGAACCAGAAATGCATTATAGGTTCTAC ACAAACTTAATAATATTTTCTCATTTGCAGCTTGATTGGCTTAATAAATTTATTGAGCATATGTGGCCTTATCTAAACAA GGTATGTGCATTTTTTATTATTGATGTTAGAAATTGTTCCTATGGAATCAATGAGACAGTGTAGTGTTAGTGGCTTAGTG CAACTATTTTGGGTAGCAAAAATCATCGTGCCAAAAATTCAATCTTCATAGGCAATTTGCAAGACTGCAAGGGAGATAGC AAAGCCCATCATAGCTGAACAAATTCCAAAGTACAAAATTGATTCAGTTGAATTTGAAGAACTCAACTTGGGTTCTCTTC CACCAACTTTTCAAGGTTGATCTCTCTCTCTCTCTCTCTCTCTCGCACACACACACACACACACACACACACACATTGAA CTACTGATTAATGTTTATGTTCATCTGAATATATATCAGGAATGAAAGTCTATAGTACTGATGAAAAGGAGTTGATTATG GAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCATTTGGGCTGAAAGCCACAGTTCAGGT ATTACATCAGTGACTTCATGAACTTTTGAAGAACAGAACAAAAAATGTGTGGTTTAATATGAAGGGTATTTATGTTTTTA AACAATTGCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTAGTTCCCAGTTTTCCTTGC TTTGCCAATATTTATGTGTCTCTCATGGAAAAGGTGTGTATGATGTCAAACTCCTTAATGACTAATTTCCATTGTACTTT TAGTGAGGGCAAAGTTGTGTTTGGATACCAATTGAGTGCAACATGAACAGATTTTCTACCCAATCAATATGTGTTTAGAT ACTATTTTAGTGCAATGTGAATGAACTTTCTACCCAATCAAGCTATGTTTGGATATACGTTGGCACCAGTGCAAAGGAAC GTCAGCACTCACTTCGAAATAAAAACTGAACAAAAGATTCATTGGCACCAGTGTTTGAATTTCATAGCCATTGTGTTTGG ATATACGTTGGCACCGGTGTTTGAATTTCACAGTCATTCACATTGCACTAAACAGGTATCCAAACACACAGTAACAAGAG ATTCATTCACTTTTTGTCTTGAAATGGCTGTGAAATTCTATTTGCGCTAATGCAAAGGAATATCCAAACATAGCCAAAGA TCCATGACATCTTGGGGACTCTTTATCACTGAAATAGTGAGCAAAAGAATAACTTCACATAGTGTTCTTAAACACACAAT CCTATTTAATGTATGTTGCATACAAATTGACCAACATGAATAGACTTTCATCATAATTCATAAGAAGAGTTTCATTCACC TTTTATCTTGAAATGCATGCTAATGTTTGATTACACTGGTACTAATAGATATCTTGTGCGTATATATAGCTTGTGACTAC ATCCATGTCCCACCTTCCTGCATCCATCTCTGTAGTTATGTTCTTCTCTTTCCCTCTTCTTCTTCCCCTTTATTGTCACT TTGATTCATTGATTGCAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAGCTGATGCAATGTCTATTCCTGGTGTATA CAGGATTGTCCAGGTAGCATATAGCACTTTCATCATGTCCTCTAAATTTTTGTGACTAGACATTATTTTGATTGTAAGGT TTTAATATTGATTTCTTCTTCTCACTTCATTTCCTTTCAGGAACTTATAAAAGACCAGGTTGCAAAAATGTATTTGTGGC CCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGTATGTATAATATTTCTTCCTTTCATTAGTTTATAACATTAGG TGAATTTTAGAGTAGCTAATGTCACTTGGTTTTTCAGGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAGGTTCTC AGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTTAAACTAACAGATGATAAACT TCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAACTTGGTCGTTAAAGATC CAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGGTAAGTATCTTCAGATGCAATTCTAGATTAAAATTG GATGTCAATATCCTTTAGGACAATTTATATTTCCGATTGAATTTTTCTCTCCGCACTAATCAAATTTTGACCGTCATTTA AAACTATCATGTAAATTTGTACCAATGGGTGATTGGTTCAAGTGGTACATGTTTGATTCCCCTTAAACAAGATCTCAGGT TCAAGTCTTGTGGATAGAAAAAAAAACTCCCACTGGGAGAGCTAGTTCGACCAGGATGTGGATGTTTCCAACTCGAATAA GATTGTCTCATGTGAAAGATACTTGTCTTACACACACAAAATCATGTAAATTCGTAACTTTCTCACTCATGTCTTTCTTT GTGGCAATATTTCATTAGTGGGACAGGAAACTGTGACAATATTGGGGACAGGAGATCTTGATCCTATATTTCATTGCATA ATTTCCTCTTACATATTTTCAAGCATGTTCTTTACATTCTTTTGTCTATATTGGCAGCCATTCAAGCATGTTTTTTACTT TCATTGCATAACAGTTTCCTCTTACAAATTTTCAAGCATGTTTATACTTTCTTTTGTCTAGATTGGCAAGAATGAGAGGA TGGGTATGAATGTCATACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTCTTAATTTACTCAAGACAATG GACCCTAAGGATCCTGAGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATACAAACCTTTTAAGGGAGATGA GTTACCTCAAAATGCTCAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAA TTACCATCCATGAAGCTGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGACTGATATTTAAAGGAGAGGAG AGAAAAACCAAGGTACAATATAAGCTCATTCTGATTTTATTTATGTCATAACCAACTATCCAAAAAGCTTAAACTGTTGG GTGAAGACACATGCATAATTTTAGATTCTATTTCTAACACGAGCCTCACACAAGAGTCCATTAGGCTTGAAGCATGAGAA TGCAAATATCCACCTACTTTTAACGGAAGTTTAATTATTTTCAAAGAAGTGCTAACAATACACTCCACATGATTGGTAAA TTTTTTAAAAAGTCAATACATTTGCTTCAATTTTTGAAAAATGTATTCAAATTTTAAAAAAATAGACCAATTACTAAAAG TGTTTCTAAAAAATGTGTTAAAAAGAGTGTGTTGCTAGAATTTCTGTTTTTTTATTAGAAGGATAGGTGCAACAGTGATT GAACTTTAAACTTCTTTCCTCATACAGATTCTGAAACAATTCATGTCTAAAAGTTTATATGATACTGTCAGAATGTCAGG GTCAGAGGAAAAGTGGATCAAATGAAATAGTCCCATTAAAATGGTAGATGAAAACTTCCAAAAACTTCAGAGGAGCCATA AAAATGTTATTTCTCTATAATTTTATGAATAACTTTATTTTCCATACAGTCCAATGAAATAAGACTTGACTGCTATCATT ATTATTAGAAATCATAAACCTTCAATTAATGGTTGAGTCCACAAAAGCCATTACTTGGAGTTGGAAAGAACCATTATCCC CACCAGTGCCACTATTTGTTAATGACACGTCTACTAAGACAATTACTATGAGAACCTCTTCACTGCATATGTTGTTTTTA AATTTGAATTTAGCTTGACCTTTCTGTAAAAACCATACAGCATGTAAAGAAAAATAGAGACCCGAGATGGGATGAAACAT TTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATATGTTGAAGTGCAAAGTGCCTCTTCAAAGTTGGGCCTA TTGCATCCTAAGGTAATGATAATCTTACACCACTTTCATGAGACTAGATGGAATGGATTTTCTACAATATATGAAACTAG AGATCCATGGTTTTCATCTTATCTTGATCCTGAATCAAATTTTTCCACTTCAGTTTTTATACATTTTCCTTCACTTCAAT TGAGGATGATAATTTCTGTTTTTTGACCTTGTATCTTCTTCTAATCAGGAACCTCTGGGCTATGTGGATATAAATTTATC TGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGGAAGGATTCAAATTGAGCTTC AGTGGAGAACTCCCTGATGATGGCTAATACCAGTTCAAAATTCCCAGCATACATAGTTTTTGTAAAGCGCCGATTCTGAT GAGATTTCAATGCAAGCTCTCAAATTTGGCTCTCTATGTCGGATCAAATAAAATATTGGAGCTGAAGATTTGTTGGATAA ACAACATCAATAGCTGTGTCGAGTGATGTTCCCATAGATTGTTGTCTTTGCTATGTTCAAGTTCTGTTCTCAGTTGGTGT GAGTTATTTATTAGCATTAAGGCTATGCTTGAATTAATGGAATAAAATGGAATGGAATAGAATGAAACACAATGGAATGG AGTGAAACGGAATTGATTAAATAGTTCATCCTCCTGCTTGCATACATCATGATGGAATGCGACAGTTAGCTTAAATAGAT TTTAGGCTCAGGGTTGTCGTGTGAGTCGATAGAGATAGTCAAGCGATTACTTGAGGAATGGACTATGTTCCTCAATGCTG ATTCCTAAGGCGCTTCAAAAAACTCTTAGGGCCGTTAGGTGCGACATATAGTATAAGGCCTGATAGTATAAGACCTGATA GTATTAGGTCTGATAGTATAAGCCCTGATAACTTTCTTGTACTATCCAGCATTTGACCATACTCTGTATAATTTACCATA TCGTTTAAATTAATGCAATTTT
CDS sequence (LotjaGi5g1v0004700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATTTTGAGTACCATAGCTAGTTTTTTGGGATTTGGAATGGGAACTTCACTTGGACTGGTGATTGGCTACTATTT TTTCATATACTTCCAACCAACACATGTCAAGGATCAAACAGTTCAACCTTTGGCCGAGCAAGATTCTAAAACTCTGCAAC AGTTGATTCCTGAGATACCCTCTTGGATTAAAAATCCAGACTATGATCGCCTTGATTGGCTTAATAAATTTATTGAGCAT ATGTGGCCTTATCTAAACAAGGCAATTTGCAAGACTGCAAGGGAGATAGCAAAGCCCATCATAGCTGAACAAATTCCAAA GTACAAAATTGATTCAGTTGAATTTGAAGAACTCAACTTGGGTTCTCTTCCACCAACTTTTCAAGGAATGAAAGTCTATA GTACTGATGAAAAGGAGTTGATTATGGAACCATTGATGAAGTTGGCTGGGAATCCTAACATTATAGTTGCAATTAAAGCA TTTGGGCTGAAAGCCACAGTTCAGGTTGTTGATCTGCAAGTATTTGCTGCTCCACGTATAACTCTGAAGCCTTTAGTTCC CAGTTTTCCTTGCTTTGCCAATATTTATGTGTCTCTCATGGAAAAGCCGCATGTTGATTTTGGACTAAAACTGCTTGGAG CTGATGCAATGTCTATTCCTGGTGTATACAGGATTGTCCAGGAACTTATAAAAGACCAGGTTGCAAAAATGTATTTGTGG CCCAAGGCCCTTGCGGTGCCCATAATGGATCCAACAAAGGCCATGAAAGTGCCAGTTGGAATCCTTCATGTGAAGGTTCT CAGAGCAGTGAAGCTTAGAAAGAAAGATTTAATGGGGGCATCAGATCCTTATGTGAAATTTAAACTAACAGATGATAAAC TTCCTTCAAAGAAAACCACTGTCAAATACAAGAATTTGAATCCAGAATGGAATGAGGAATTTAACTTGGTCGTTAAAGAT CCAGAATCTCAAGTCTTAGAGCTAAGTATTTATGACTGGGAGCAGATTGGCAAGAATGAGAGGATGGGTATGAATGTCAT ACCATTGAAAGAGCTTACACCTGATGAACCAAAAGTAGTGACTCTTAATTTACTCAAGACAATGGACCCTAAGGATCCTG AGAATGAGAAGTCACGTGGCCAGCTCATTGTTGAAGCTCTATACAAACCTTTTAAGGGAGATGAGTTACCTCAAAATGCT CAAGACTCCAATGGAATAGAAAAGGCACCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTACCATCCATGAAGC TGAAGATGTTGAAGGAAAACACCACACAAATCCTTATGCAAGACTGATATTTAAAGGAGAGGAGAGAAAAACCAAGCATG TAAAGAAAAATAGAGACCCGAGATGGGATGAAACATTTCAATTTATGTTGGAGGAACCCCCCACCAATGAGAGGCTATAT GTTGAAGTGCAAAGTGCCTCTTCAAAGTTGGGCCTATTGCATCCTAAGGAACCTCTGGGCTATGTGGATATAAATTTATC TGATGTTGTTAACAACAAAAGAACCAACGAGAAATATCATCTTATTGACTCAAAAAATGGAAGGATTCAAATTGAGCTTC AGTGGAGAACTCCCTGA
Protein sequence (LotjaGi5g1v0004700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGILSTIASFLGFGMGTSLGLVIGYYFFIYFQPTHVKDQTVQPLAEQDSKTLQQLIPEIPSWIKNPDYDRLDWLNKFIEH MWPYLNKAICKTAREIAKPIIAEQIPKYKIDSVEFEELNLGSLPPTFQGMKVYSTDEKELIMEPLMKLAGNPNIIVAIKA FGLKATVQVVDLQVFAAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGVYRIVQELIKDQVAKMYLW PKALAVPIMDPTKAMKVPVGILHVKVLRAVKLRKKDLMGASDPYVKFKLTDDKLPSKKTTVKYKNLNPEWNEEFNLVVKD PESQVLELSIYDWEQIGKNERMGMNVIPLKELTPDEPKVVTLNLLKTMDPKDPENEKSRGQLIVEALYKPFKGDELPQNA QDSNGIEKAPEGTPASGGLLVITIHEAEDVEGKHHTNPYARLIFKGEERKTKHVKKNRDPRWDETFQFMLEEPPTNERLY VEVQSASSKLGLLHPKEPLGYVDINLSDVVNNKRTNEKYHLIDSKNGRIQIELQWRTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 537 | 537 | 0.0 | – | |
| PANTHER | 1 | 537 | 537 | 0.0 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| Phobius | 29 | 538 | 510 | - | – | |
| ProSiteProfiles | 67 | 249 | 183 | 27.751 | ||
| Pfam | 67 | 248 | 182 | 3.3E-20 | ||
| SUPERFAMILY | 256 | 391 | 136 | 1.09E-30 | – | |
| Gene3D | 257 | 410 | 154 | 2.6E-33 | ||
| Pfam | 260 | 361 | 102 | 5.4E-23 | ||
| SMART | 261 | 361 | 101 | 3.4E-20 | ||
| CDD | 262 | 364 | 103 | 9.10696E-26 | – | |
| ProSiteProfiles | 262 | 346 | 85 | 16.495 | ||
| PRINTS | 277 | 289 | 13 | 7.0E-7 | ||
| PRINTS | 304 | 317 | 14 | 7.0E-7 | ||
| PRINTS | 326 | 334 | 9 | 7.0E-7 | ||
| MobiDBLite | 394 | 414 | 21 | - | – | |
| SUPERFAMILY | 418 | 537 | 120 | 9.08E-22 | – | |
| SMART | 419 | 518 | 100 | 1.8E-14 | ||
| Pfam | 419 | 521 | 103 | 1.1E-12 | ||
| Gene3D | 419 | 538 | 120 | 7.8E-25 | ||
| ProSiteProfiles | 420 | 503 | 84 | 10.619 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0004700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…