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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012100 |
| Transcript ID | LotjaGi5g1v0012100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT1G45000.2 AAA-type ATPase family protein; Swiss-Prot: sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B; TrEMBL-Plants: tr|B3H533|B3H533_ARATH AAA-type ATPase family protein; Found in the gene: LotjaGi5g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2660784..2663783) extracted from Lotus japonicus Gifu genome v1.2.
GACGCTGCCGCTGAAGACGCCGCAAAACGCCGTAGTGCTGCGGCGGCGTACCAGAAGAAGCTCCTTCAACACAAGGAATT GGAATCCCGAGTACGATCAGGTTCGTTTCTTATCCTCTCGTTACTGCAATTCAATCTCGTTTTCGTTTTTCTTGAGTATT CAGAATGTCTAGGGTTTTGTTGCGATTGTGATGATTTTGCATTTTGAATCGCGAATTTGCAGTGAGGGAGAATTTGCGAG CTTCGAAGAAAGAGTACAATAAAACTGAAGATGACTTGAAGTCTCTTCAGAGCGTTGGACAGATCATTGGCGAAGTTCTC AGGCCTCTGGACAAAGAACGCTGTAATTGTTCTATCCTTTCATATCTGGCTATTCAATATACATATTGAGATTTAAGATT GAGATTATGTGCAAGAAGTTGATGTTTCATTTTTATTATTTATGTAATCAAATTAAGTAAAATTGATTTGTTTGTATATT TGGAGAAATTAACTGTAATTGTATGAGTGTGTAAACTTTGTGTAGGAACTAGGAATAGATACTCACTATTTAATTAGTTA GCAATACTATTTGGCACGAATTATTGGTAAACGAAACCTTTACGAGTGAAATAATTTGTCCAATCAGTAAAAAGATGGGA TACAAGTTTCACTTCATGCTACAGGAGAGAGAAGGAAAAAAATCAAGTATGGCAACACGTAGGATTCGTACGTTTCGTTT CGTCACATTAACCATTTTCCTTAATTAGTTCATTTACCTGCTTGATAAGATGTCTTATTTGTTTCCTTGGTTGGTTGTTG TGAACTTGTGATTAGTGGTGAATGATTATTGTATGTTTTTGTTATCTCAGTGATTGTTAAAGCAAGCAGCGGGCCTAGGT ATGTGGTTGGCTGCCGCAGTAAGGTAGACAAGGAAAAACTGACGTCCGGCACGCGAGTCGTTCTTGATATGACGACACTC ACCATAATGCGAGCCCTTCCACGTGAAGTAATGTTTATTTGATGCATATGTTCATGTTCTTGTTGGGTTGTCTAATTTTG GTACCTTTTCTGAAAATCATCTGCTTGTTTCTTATCTGAAATTGACAGGTCGATCCAGTGGTTTACAGCATGTTGCATGA GGATCCTGGTAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAATCAATTGAACTTC CTCTGATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGTGATTTGATTACCTTTTCACTGCACTATT TAGTCCCGGTCCTCCATTAGTGTTAAGTTATGTTGCTTTTTTTATCAACAAGTTCTCAATTCTGATCTTCCAGGGTGTTC TCCTTTATGGGCCTCCTGGTACCGGTAAAACATTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCTAACTTCTTGAAG GTCAGTTTTTGTTTCTGTTCTGAACTCAATTATGTTTTGAAGTTTCCTTTGGTATAAATATACAGTTCCATTCTTTTGTA GGTTGTCTCAAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATGCCCGTG ATCACCAGGTAGATTCTTTTCTAAGGTTTCTTCCTTCCTGTTTATATATTCAATGAGAATGTAATTCTGAATCTCCACTT TGTTTGTTAAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGCGGTCGTCGTTTTAGTGAGGGAACAAGTGCA GATCGTGAGATTCAAAGAACACTAATGGAGTTGCTAAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTATATCTTTC TTCATAATCCCCATTTAATTTAATTTGAAAACCATAATATTTGCTTTTAGATGAGGAGCTTTATCCTACTTTTGTATTTT GGTGGGAAGGCTAATAGATGGTGAACAATTGGTCAGCTTATAGAGTGACTGCATTTCAAAGTTTCTTAATTTTCATGTGG TCTTTATTTTTTTCATATTGTTGAGGTATATAATTTTTGCTGATGTATAAGACTTCAAAGATGCAGTTGCAAACATGATG GTTAATGTTAGCAAATAAATTCTTGTGTGACCATTTATAATCCAAAAGATTGAGCTACTACTCCATGACATTTTTCCTGT CTGGAATAGCGAAGTTGTAATGCTTACTTTTTTATCAGCAACGAAGTTGTAAAGTTGAGCTGAAATTTGTCAGGAATTTT CTCTTTGTCAACTTTGTTTATACATTTGAATTTCCGTGTATCTAGTACAGGTTTATTTCATTTATATGAGATTTAATTGA AATATCAACCTTTTCTGATTAATTTGTCTTCTGGATATGGTGATTGATTCTATATCTAGAAATGATTGTCAACCAAATTT TAATATTGGGTTGATAACGGAATTTCTGTCTGCATGGATGTTGTAGGTTAAAATGATAATGGCAACAAACCGGCCTGACG TACTGGACCCTGCTCTTCTGCGTCCAGGTAGATTGGATAGAAAAATAGAAATCCCATTGCCAAATGAACAATCAAGGATG GAAATTCTGAAGATTCACGCTGCTGGGATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTTAAGCTTGCTGAGGT GAGTCCAGTTTGGTTTAGTTTTGTTTGCCAATTGCTGCTTGTCTAATGTGCTTTATGTTGTTGCTAATTGCTCAGGGATT TAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATG AAGATTTTATGAAGGTGAGTTCTTTCTTTGAGGAAGCAATTTTCTGTGTATTAATCATCTACAAAGGGATTAACCCATCT TTATCACTCACGGGGAAATAACTTGACTTCTTGTTTCACTTCCAGGCTGTTAGAAAACTAAATGAGGCAAAGAAACTTGA ATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAA
CDS sequence (LotjaGi5g1v0012100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACACTCACCATAATGCGAGCCCTTCCACGTGAAGTCGATCCAGTGGTTTACAGCATGTTGCATGAGGATCCTGG TAATGTTAGTTACTCCGCCGTTGGTGGTTTATCTGATCAGATAAGGGAATTGAGAGAATCAATTGAACTTCCTCTGATGA ATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACCGGTAAAACA TTGTTAGCTAGAGCAATTGCCAGTAATATAGATGCTAACTTCTTGAAGGTTGTCTCAAGTGCAATAATTGATAAGTACAT TGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATGCCCGTGATCACCAGCCCTGCATCATTTTTATGGATGAGA TCGATGCCATTGGCGGTCGTCGTTTTAGTGAGGGAACAAGTGCAGATCGTGAGATTCAAAGAACACTAATGGAGTTGCTA AATCAACTTGATGGGTTTGATCAACTTGGGAAGGGATTTAATGGGGCCGATCTTCGAAATGTCTGCACGGAAGCTGGAAT GGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTAAATGAGGCAAAGA AACTTGAATCCAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAA
Protein sequence (LotjaGi5g1v0012100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLTIMRALPREVDPVVYSMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL NQLDGFDQLGKGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 171 | 171 | 5.1E-150 | – | |
| PANTHER | 1 | 171 | 171 | 5.1E-150 | – | |
| Gene3D | 8 | 191 | 184 | 8.6E-50 | – | |
| SUPERFAMILY | 29 | 213 | 185 | 1.36E-44 | ||
| CDD | 35 | 163 | 129 | 1.67753E-19 | – | |
| SMART | 65 | 204 | 140 | 4.4E-10 | ||
| Pfam | 69 | 169 | 101 | 3.4E-30 | ||
| Pfam | 171 | 203 | 33 | 2.1E-7 | ||
| PANTHER | 172 | 228 | 57 | 5.1E-150 | – | |
| PANTHER | 172 | 228 | 57 | 5.1E-150 | – | |
| Coils | 228 | 228 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0012100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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