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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0041200 |
| Transcript ID | LotjaGi5g1v0041200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT5G52470.1 fibrillarin 1; Swiss-Prot: sp|Q9FEF8|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b; TrEMBL-Plants: tr|A0A072U8T6|A0A072U8T6_MEDTR Mediator of RNA polymerase II transcription subunit 36a; Found in the gene: LotjaGi5g1v0041200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6909383..6912126) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGAATCTTGGCTTCTTCCTCAACACAGCGCAGCCTCTTTCCTGGTTCAAGCAGCAGCTCGTTTGGAAGGTGCTCGA CGATTTTCCTCACTGACATGTTTTTATTTTTCACTTTCTTTTTATCCTTGCACTTGTACAGACCAGACCAGGTTCCTCTT CTGTCGGTGATGATGGGGTTGTTTTTTTGAGGGGCGATGAGGTTGTTAAGATAAACCAAGTTCTGGGCTTTTGGGATTAG TAGGAAGAAGATATGAGGTGTGGAAGATGGAGAATTGGGTTCTTGGAATGAGCAGGAAGGGGTTAGGGAGATCTGGGTTC TGTGGTATTTTCCGGCGACCAAAAGATAGAGGGGAGCATTGGACGGCGCGGGATCAGGCCCCATTGGTGGGGAGAGAGTT AGAGAGAAGGGAGTTTCAAAGGGTTCCTTTTTATTTATTATTTTCAATTTTTTACAGCATCTATAAAAACTAATTTCCCC TCTTACCTGAATGTACCCTATAACAGGCCTAAGATTACTTTTTATAATAATAAGATAAGATTTTTACGTGTTTGATATGA TATAAAATACTAATTAGGGTTCTATTCTTTGTATTGTTGTAGACCTTCAAAGATGTCTCTTCTTCCTACAGGTAACATAA TAATTTTAGCCCTGAAAATCTACTTATTTCGTTCATTGAGAATGTACTGATATGCTCCATGCAAAGGAATCATATGTAAT GTAATTTAGTACTAGTAGCTTTTGAACAAAATTGGCCGGTGAGTGATCTTTGCCGTGTTTTGTTGAATTTGTGCGTGCAG GTCATCAGTTTGCGATTGTGCCTCACAGATTTGAAGGGCTTTTCAGTGCTGAGGGTGTATCGGATGTCTTTCTTACTAAG AATCTGCTTCCTGGTCAAGCTGTTTACAATAGGGTTGTTGTGCAGGTTGTTATTTCTCTCTCTATTTTAAGTATCTGTTG TTATTCTGAATACAAAACTTAAGCACGCATGCATGAAAATAATTGCAGAATGAGGATGGTACACAAGTTGAGTATAAGAT TTGGAACTCTTTTTCCTCCAAGTTGGCTGCTGCCATATTTGCCCACTCAGATAACATTCATATTGTAAGAAATTTCCTTT CCTTGTCTTGTACTATTTGCTTTGCCTTGTCACTGTGCTTCAATTACAGTATCTTGACATCTATGTGTTTTTGTGTATAA TAATTAAAGAAACCTGGATCCAAAGTCCTTTACCTAGGAACTGCTTGTGGCGCAACTATTTCTCTTTTGTCTGACATTGT TGGTCCAGTAAGTACTAGTTCAATTTTGTATAATCTTTTTACTTATATGGTGTCATGGTGTTAATGGCTGATCCCAATAT GGTGTTTTATTTTATTTTATATAGTCAGGATTGGTCTATGCAGTTGGATGTTCCAATGTAAGTGGTCCTGACTTGGTCAA CATGGCTGCGATGCTTACTAATGTTATACCCATTATTGAAGATCCTAGATATCCAGCAAAGTACGTCACATTGGTTGGAA TGGTAGATGTGATATATTCTGACATTGCTCAACCTGATCAGGTGTGTTTTATGTTTATAACTGATGTATCTAGAATCAGT AGCTATGCATAATATTATAGTAACATGTTTATATAAACTTTGCCATGATTACAAATGACCTTTTATTAGGATGTGCCATA ATGCTTGCTTCATCAGTTTTTTTTTTCCTACTGATTTTGCTATTTTCATGAGTTTTGACCATTGCAGACAAAAATTTTAG GGTTGAATGCTTCACATTATCTCAAAACAGGAGGTCATTTTGTTCTCTCATTCAAGGTTTGTAACATGTACGTTATTATA TTTTTTAAGAATTTTATTCAGTTTTATGCGACTCTGTCACACTAGGCAGTTTTAAATCAATTAATCCCGATTTTAAAACA CTGCTGCATAATTTTCTTTATTTTTTCCTTTTTATCACATCATATATCGCATTGATCATTTCCCTCTCTTCTCTTCCTTG CTCTAAAGTTTAATTGGGTCTAAACTCTAAACACCCCACTTGGGTGTCTACCGACCAAACATATTTCTTAGTTAATATGA ATTTTTAAATGGAATTTGTACTCCCAATGTTTTAATATAGAACTGTTTAAACAGGTAAATTTTTGCTTTCAGTTTAAATT CATTATTTGGTTTTTTAGGTTGATAAATGGTTAGGTCAGAGGTGTAAAGTGATGGGTTATAACTGTTGATCCAGTAAATA ATGCTCATTCAATTTATTTTTTATGTTAGACTAACTGCATAGACTCAACACAAGATCCTGAATCAGTCACTCGTAGTGAA GTCCGTAAGCTGAAGAAAGAACAATTTAACCCAAGGGAGCAGACCACCCTTCTATCTGAGGCGGACCATTATGTTTTGAT TGGTGGATACAAAATGACCAGCCTGAAAGTGCGTATGTTAGATGCCCAATTGCAAGATATGAGTCTTCGCACATTGGAAG TATGAGAGATTCTAATGCAGGGTTTTATAAGGCCTTAAGCTCTCCATCTACAACAACTAGCTTTTGTGGTGTACTTCCCG TAATTATTGAATATGCTATTTTCTTTTTGTCGTATTTTAAAATTATGGCTTGTTAATGTTACCTATGTGGATATGTTTTA TTTTGTCTATGTTTGCTTGGGATAATGCCTAGAGGAAATTATTATTATTGTTATTATTATTATTATTATTAGCTTTTTTG TGAAGATGTCATGAGTAAATAAAC
CDS sequence (LotjaGi5g1v0041200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTTCTTCCTACAGGTCATCAGTTTGCGATTGTGCCTCACAGATTTGAAGGGCTTTTCAGTGCTGAGGGTGTATC GGATGTCTTTCTTACTAAGAATCTGCTTCCTGGTCAAGCTGTTTACAATAGGGTTGTTGTGCAGAATGAGGATGGTACAC AAGTTGAGTATAAGATTTGGAACTCTTTTTCCTCCAAGTTGGCTGCTGCCATATTTGCCCACTCAGATAACATTCATATT AAACCTGGATCCAAAGTCCTTTACCTAGGAACTGCTTGTGGCGCAACTATTTCTCTTTTGTCTGACATTGTTGGTCCATC AGGATTGGTCTATGCAGTTGGATGTTCCAATGTAAGTGGTCCTGACTTGGTCAACATGGCTGCGATGCTTACTAATGTTA TACCCATTATTGAAGATCCTAGATATCCAGCAAAGTACGTCACATTGGTTGGAATGGTAGATGTGATATATTCTGACATT GCTCAACCTGATCAGACAAAAATTTTAGGGTTGAATGCTTCACATTATCTCAAAACAGGAGGTCATTTTGTTCTCTCATT CAAGACTAACTGCATAGACTCAACACAAGATCCTGAATCAGTCACTCGTAGTGAAGTCCGTAAGCTGAAGAAAGAACAAT TTAACCCAAGGGAGCAGACCACCCTTCTATCTGAGGCGGACCATTATGTTTTGATTGGTGGATACAAAATGACCAGCCTG AAAGTGCGTATGTTAGATGCCCAATTGCAAGATATGAGTCTTCGCACATTGGAAGTATGA
Protein sequence (LotjaGi5g1v0041200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLLPTGHQFAIVPHRFEGLFSAEGVSDVFLTKNLLPGQAVYNRVVVQNEDGTQVEYKIWNSFSSKLAAAIFAHSDNIHI KPGSKVLYLGTACGATISLLSDIVGPSGLVYAVGCSNVSGPDLVNMAAMLTNVIPIIEDPRYPAKYVTLVGMVDVIYSDI AQPDQTKILGLNASHYLKTGGHFVLSFKTNCIDSTQDPESVTRSEVRKLKKEQFNPREQTTLLSEADHYVLIGGYKMTSL KVRMLDAQLQDMSLRTLEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 5 | 239 | 235 | 6.7E-79 | ||
| Gene3D | 7 | 60 | 54 | 2.3E-12 | – | |
| PANTHER | 9 | 238 | 230 | 6.2E-86 | – | |
| PANTHER | 9 | 238 | 230 | 6.2E-86 | – | |
| SMART | 12 | 237 | 226 | 1.1E-96 | ||
| Pfam | 14 | 236 | 223 | 9.0E-75 | ||
| SUPERFAMILY | 28 | 224 | 197 | 2.67E-34 | ||
| PRINTS | 30 | 49 | 20 | 4.9E-55 | ||
| PRINTS | 56 | 75 | 20 | 4.9E-55 | ||
| Gene3D | 61 | 237 | 177 | 2.0E-66 | – | |
| PRINTS | 83 | 104 | 22 | 4.9E-55 | ||
| PRINTS | 108 | 125 | 18 | 4.9E-55 | ||
| PRINTS | 133 | 162 | 30 | 4.9E-55 | ||
| PRINTS | 163 | 192 | 30 | 4.9E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi5g1v0041200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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