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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0052700 |
| Transcript ID | LotjaGi5g1v0052700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aspartate-tRNA ligase; TAIR: AT4G31180.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9M084|SYDC2_ARATH Aspartate--tRNA ligase 2, cytoplasmic; TrEMBL-Plants: tr|A0A0L9V226|A0A0L9V226_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0052700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8801552..8804555) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTGTTGAAATCCACACTCCAAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTTTTTAGACTGGACTACAAA GGGCAACCTGCATGCTTGGCCCAATCACCTCAACTTCATAAGCAAATGTCAATATGTGGTGACTTTGGCCGTGTTTTTGA GATTGGCCCTGTGTTTAGAGCAGAGGATTCTTTTACTCACAGACATCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGG AGATTAAGAAGCATTACTTTGAGGTATTTTTGGCTCGTGGGCTGATATTGTGTGTTTGCTTTTGGAATTGTTGAGGGACA TAACTTGGCTTACTGATATTTTTGAGTTTTTTTGGCAGGTTATGGATGTTGTTGATAAATTGTTTGTCGCGATGTTTGAC AGTTTGAACCAGAATTGTAAGAAGGATCTGGAAGCTGTGGGATGTCAGTATCCATTTGAACCTCTGAAGGTGCTTTTTTT GTATCATCATAATTTTGTTATGTAGTGGATTTATTACACTATTTGTTGCATAGTATTTAGTTGATCTGCTATGTAATGAG TGCATGATGCTTTTATTGTGTAATACTAGATTAGGTGCAAATTAGTGCATTAGTTACATGTTCTTGCTTCTGATCTGACA ATAGCCCTGTGAATGTGCAGTATCTGCGAAATACTCTGCGTCTTACTTATGAAGAAGGGATTCAAATGCTCAAGGTAAGC TTTAAACTATCTTAACTATTAAGTTTGCTTGTGGTGGGCTAACTAAATAATGTGATAGGATGACGGTGTTGTCTGATGTT TTACATCTTCTATCCTTTTGTCTATTGCATCACTCTGAGATAGAGAATGAGGGAGAGGAAGGGCCGGAGGGGGAGTCAAA GCACTTATAGGGAGTAGCCCATGCACTTTTTAATCTCATATTATAGCATATAAAATATCAACTCTAAAAAATCTTTTAAG TCAATTTAACAATAACTTATGTCATAAACTCTTGAAATTATATGTATAAATGTCAATGAAAGGTTATTTATGATAGAAAT TGTTGAAAATAGAATGCGATGGATAGAAATAAGAGCAGTAAGAGGGAGAGGAAGCTTTATAAAAAATTGGGTGGACAACT GTCCTGTGAAGTAAAGGATTTATTACAATTTACAACTTAAGAAGTCATGTTCTATCACAATCCATAATTTCAGGTTTGAA AGCCTGTAATTTATTTGTTAAGAACTTGAGTTATTTATTCGTTAATAACAAGCACTAATAGCAAAGACAACATCTACTCA AAACGGGCTTTGTAGTTTCATGTTTGCTCAGTTTTAAATGGTAGGCCTGTCATGTTTTCCCCAAAAGAAAAAGCAAATTA AATTCGTATTATCACTAGTGTGTGTGTGTGTGTGGCGCATATCATGCAAACATTGGTGGAATGAACAAAAAAATTTGAAC CCTATTTAGAATCTTGCATTCAACCAAACAGAATACAAAAATGCTTCCAAAAGCTTTTAGATCTTGCAAAGTCCAGTTCA TGTGAAAGCCAGTGAATCTTCTCCAGTGACCTTGAGCTAGTTGAATTAGTCAAACGTACATGGCAGAGAGAAAAGGCATA AATTCAGTCTCAGAAATAAAATATGTATAAAGTCAGATTACAAACCATTTTAGGCAACAAGTTCAGTTAGATACCTTCAA TTTAGTTGGGTGAATATATCAGATTGAATGGGATCGAGGCCCAAAAGACACCCTTCAGTCTGTCCATACAGTGTGTTTGT CAATTTAAAATGGATTGCTTAAAATATTGGCTCATGATGGATGATATTAATGTATTATTCATGTTGATTTGTTCACTATG GAGAGTCTGATAACTTTTCAGAGTCATTAAAATTGTTTCTCAACTTTTATCAGTTTTGTATGCTTATCAATTAAAAAATT GTCAGTTTTGATAAAGGATGCCATTATTGTATTGTTTGTTGACTCTCTAGAGTGCTATCAGACAATGGTCCGGTGACTGA ATTGGCACCACAGCTCTGATGATCTTAAAGTCTTCCTGTCTATTTTTTCTTCTTTATGTATGGTTATGGAATTCATTAAC CTGTTGAATCTTGGACCTTCAGACTCAAAAAGGACTTAACCTATAATAACTATTATGATTATCTATAGGACGGTAGATAT TTCGTATTTACACTATGACAGTCTTGCAGCTACTAATGAATTCTCTTTGCAGGAGGCTGGAGTAGAAATTGAACCTTTTG GTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCAAACTAGTTCTAGAGAAGTAAACCCTTCTCTCTGTTTTTTACCAC TAAATGTTGTGATGAGCTATTGTTTAAAATATAAGCTACTATTCTATTTGTAGGTACGGCACGGAGTTCTATATCCTTCA TCGGTACCCTTTGGCTGTAAGACCATTCTATACAATGCCCTGCTATGACAATCCAGCTTACACCAACTCATTTGATGTCT TTATTAGAGGTAAGCAATAATTTATTTTGCTATACGATGCTTTGGTATGACAATCTGGTGCACTTAACTCATCATCATAC AGAGATTACCGTCATGTATCTCAGTAGAACCTTGCTGTTTCGGTTACTGTTATTTGATTTCTGCATATTGCTTCTCTTTA GGTGAGGAGATAATTTCAGGAGCTCAACGTATCCACGTGCCAGATTTTTTGGAAGAACGTGCAGCGGCTTGTGGCATTGA AGTCAGTACAATATCGACATATATCGATTCTTTCAGGTATTGTATATCTATCACATTTACCCTCAGTTGCTCAATGTTTC ATGTTAGACTGATCCTTTTGTTGAGCTCTGTTTAATTGGTAATTTCTGGGGGTAACTGCTTTTTTAATCATTTGCAGATA TGGTGCACCACCGCATGGTGGCTTTGGAGTAGGTTTGGAGCGTGTCGTAATGCTCTTCTGCGGCCTAGATAACATTAGGA AGACATCACTTTATCCACGTGACCCGAAAAGGATTGCGCCGTGA
CDS sequence (LotjaGi5g1v0052700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATATGTGGTGACTTTGGCCGTGTTTTTGAGATTGGCCCTGTGTTTAGAGCAGAGGATTCTTTTACTCACAGACA TCTGTGTGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAGCATTACTTTGAGGTTATGGATGTTGTTGATAAAT TGTTTGTCGCGATGTTTGACAGTTTGAACCAGAATTGTAAGAAGGATCTGGAAGCTGTGGGATGTCAGTATCCATTTGAA CCTCTGAAGTATCTGCGAAATACTCTGCGTCTTACTTATGAAGAAGGGATTCAAATGCTCAAGGAGGCTGGAGTAGAAAT TGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCAAACTAGTTCTAGAGAAGTACGGCACGGAGTTCT ATATCCTTCATCGGTACCCTTTGGCTGTAAGACCATTCTATACAATGCCCTGCTATGACAATCCAGCTTACACCAACTCA TTTGATGTCTTTATTAGAGGTGAGGAGATAATTTCAGGAGCTCAACGTATCCACGTGCCAGATTTTTTGGAAGAACGTGC AGCGGCTTGTGGCATTGAAGTCAGTACAATATCGACATATATCGATTCTTTCAGATATGGTGCACCACCGCATGGTGGCT TTGGAGTAGGTTTGGAGCGTGTCGTAATGCTCTTCTGCGGCCTAGATAACATTAGGAAGACATCACTTTATCCACGTGAC CCGAAAAGGATTGCGCCGTGA
Protein sequence (LotjaGi5g1v0052700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKKHYFEVMDVVDKLFVAMFDSLNQNCKKDLEAVGCQYPFE PLKYLRNTLRLTYEEGIQMLKEAGVEIEPFGDLNTEAERKLGKLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPAYTNS FDVFIRGEEIISGAQRIHVPDFLEERAAACGIEVSTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLDNIRKTSLYPRD PKRIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 246 | 246 | 5.9E-85 | – | |
| PANTHER | 1 | 246 | 246 | 1.1E-143 | – | |
| PANTHER | 1 | 246 | 246 | 1.1E-143 | ||
| SUPERFAMILY | 3 | 245 | 243 | 1.86E-67 | – | |
| Pfam | 3 | 240 | 238 | 1.4E-52 | ||
| PRINTS | 8 | 21 | 14 | 3.5E-17 | ||
| ProSiteProfiles | 9 | 238 | 230 | 16.279 | ||
| PRINTS | 161 | 177 | 17 | 3.5E-17 | ||
| PRINTS | 201 | 215 | 15 | 3.5E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Aspartate-tRNA ligase activity | Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Aspartyl-tRNA aminoacylation | The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. The aspartyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of an aspartic acid accetping tRNA. |
Expression pattern of LotjaGi5g1v0052700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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