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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0054800 |
| Transcript ID | LotjaGi5g1v0054800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase, putative; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q13231|CHIT1_HUMAN Chitotriosidase-1; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0054800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9317459..9323095) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACACAATGGGACAATAACGATCATAAATAACAAGACGGTAACTATCGATCCAGCACCCTCGTGTTCGGTGCCTTTG TCCTCCTAGTCATTGACTTTAACTCTTTTAGTATATATTGGCTAAGTTGTTCAACTTTTGTCTCCTTGTGTCGTGTTTGA TTTGTTCCCTCAGCATAAGCCTACAGTGCAAGATTCAATTCCACTTACATAATTAAGAGCTTGACTAAACATTTGAATAC CTCCAAACAACACAATGTCTAGCTAGCTAGAAGACGTGACTAATCAAATAATCTTAATAAAAATCTTGATATTTTTAACA TTATTTTAACACATCTTCAAATTTTGATTGGTAGTGAGAGATGCAAGGTTTCACATATATATACACATGATCATCAAGCT CTTGGTTGCATTAATTCACTACCTCCATGAAACCATGGCCGTCCAAAGCATCATAACAACACCCCTTTTGGTTATTCTCA TGAGCCTTCGTTCTTATGCATTCACTGAACCTTCTTTACATAGGCAGCAGCCACCGTCCAAGGGTGGTGTTAGAGCAGCA TATTGGCCTGCATGGTCTGATTTCTCAACCTCTTCCATTGACACAAACTACTTCACTCACATATACTACGCCTTTGTCCA ACCTGCACCAGAATCCTTCAACCTCGAAATCACTGAATCCTACAAGAAGTGGGCCCCTAAGTATGATGGTATCCATAACA TCCGCCCGCGGGTGACGACGCTGCTGTCCATCGGAGGGGGTGGCAACAACGCAACCCTCTTCTCAGAGATGGCTAGCAGC AAACAAAACCGTGCGAGCTTCATAAACTCCACCATCCACGTGGCGCGAAAGCACGAGTTCAACGGTCTTGACTTGGATTG GGAGTGGCCAGGAGATGAAAAAGACATGTCTAACCTTGCGTTGTTGTTAAAGGAATGGTACAAGGCTTTGGTGGTGGAAG CTAACACTAGTAGAAAATCACGTTTGCTTTTAACTTCTGCTGTGTATTTTAACTCCACGATTTCACTTATAGGTAATGGG CCTAGGTCGTACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGCTAGCCCAATGTGTTTTGATTACAATGGCGCGTG GGCCAACGAAACGGGCTTTAACGCGGCGTTGTATGACCCGAATTCTAACATAAGCACCAAGTATGGTATCGGGTCTTGGA TCGGGTCGGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGCGGGCGTGGGAGCTGAAGGATCCGAAT GATCATGGGGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGTATGGACTATGATGAAATCTTGGTGTT TAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTACTCTTATTCGGGCACTACTTGGATCG GGTATGATGATGGACCCTCCATAACGAAGAAGGTTCAATTTGCTCGGTCAATGGGCTTGAAGGGGTATTTCTTTTGGGCT ATTGGGAAGGACAAGGATTGGACCATCTCAAAACAAGGTAAGACACCAATACGACAATACCACTTGTTTTCACCTCTTTA TAATGATTGACAAAAAAAACACCTCTTTATAATTATTAATCAAATAAAACCTGTTTATAATTTTTTTTAATTAATACATT TTTGCAATTTTCTTTATAATATACATTTTTAACAATATTCATTATTATGTCTGTCACGAATCTGAATCCTCACTTTATAG AGTAAAGTAAGCCATTACAATCACTGATTGAGTTGTTTTATTAGCTTTTCAAATTAAGTAATCAACGTTAATGATTATGA TGATTATTTTATTCTTTAAAATGACTCTCTTATTTTAGAAGAGCTAGGTCCAGATGGTAGAATAGTTGCAAAATAAATCC CTTTGGTAAAGGCATTCATGATCGTTATTTTGTTTTTTTATTTAATTTTTTTCTAGATAATGATTTCTAAAATTAATCTA TAACATTGACCCAAAATATTCCATTGTCAACAATTCATGTACTCTCTTTTTTCTACTTATTTTTAATTTCAATTTCTCAT TTTACATATTTGTATTTGTAGTATTAAAGATTTTTCTCTTTTAGGAGAGGAGATGGTTTTTTATTATAATTTTGATGGGT TTCTTGCATTTTAATGCAGGCAGAAGTCTTTAGATTTTATCCATATAATAATGTTTGATATTTTGTTTGTTTGCTTGTGT TTTTTCTCATTTGGCAGCTTCAAATGCATGGGGATACTGAGGGCAATATATGTTATTCCAAGCTTCATATAATGCTAGCT CAACCTTCATAATTGATAACTGATTAGATCATATATAAATTTATTTTGTCGCTACATTGTTAAATAATATCAGTGTTACG TACATTAGTGAATACTATGATTTTCGATGAAAATATTGAATACTCTGATTATGTACAACAATGATTAGAAAACAATTTTG AGTTAAAATTAAAGCTGGGTACGAATAGTTAAGCATGCATAAGAATAAACCATCATCCAATGCAAACAGGTTGAAGTCTA ATGTGTTAAGAATTCACCGATCTTTTGGTGAAAACTTGTTTCTTTTAAGGAAATTTTTTTGTAAAATGCAAATTTAAATA ATAGAGAAATGAAGCAATAAGAGATAAATACATGTGAAATACAATAATATGTGCAGTGGCGGAGGAGGGGACATGCCCCT CCTTCTTACATGTGATACATATCTATATGAGCATTACTTTGATTTTGGTCACCTTATTTTAGCTCTTCGAGTCTCAATTT TTTCTCTCCACCATCGGTTACGTGATAGGAAGAGATAGGATTGTCCACCGGAGGGGTTTGGTCAGATTCGGGCTGAAAAC ATTGATTTTGTCGAATGAAATACAACAAATCACCAGGCCCACCACCGTCCATTTAGTAGCTACAGGTTGTTCAGGTTCGT CGAATCACGATTTTCTCGGTTGAGTTCGTGTGATTGTTGATCCAAAAAAAAAAGGATGAGCGAGAAGCACAAGAAGGATT TCGAGAAAATTACCAGTAAAATACAAAAAAAAAAGTCTTAACCATCAACCAAAAATAAAGCCTTTATATATGGAAATAAA AATGACTCTAATGCAACACTTGATCTCATTCAATGGGTAAGAGCATCTTCAACTTCAAATTGTTACATGCAACAATAAGA TTTGTGACCTGTGAGTGCAAGTGTCAATTTTTCTGAGGAAGACCACTACAAGGAAATGGGTAAGACAAATAGAAGAAGAA AAATTTGGGGGATTAGGGTTAAAAGGGGAAGAACTAACCTTAAACTTCTGGATATGACTTCTTTTCACATAGAGGCAGAG AAGGTCGGAGCGGTGCGATAGAGGTTCTCCGGAGCGGCACGGTGGAGGTTTCTCCTTCAAGGTCTCACGATAGTCCAGAT CCTCAATATATACTTTATTATCGCTGTAGAGTTTTAGTCTCGTCCCTCAACTATCACGAATTAATGGTACTTTGCAGCGT TCCAGTGAAATTAGATGAATTCTTATTTTAAATTTATAAAAAAAAATTGATAAGCTTGTTTGATGCAACTGCTAAAGTTC TTGAAAGTAAATTCAAAGAAGTAGAAACCTCTCTTCCCGTTCCCCAGAAAAAAAAAAAGGCTCAAATCACACTCAACAAA CATGGAATCAAGTCAGCATATGCTATATACAACCACATATATGAGACCCAAGATGGCTACCTCAAAGAGTCTACAACTAT AAAATCTCATGGTTGTCCTTCACCCATGATTTAGCAAGTGGAGCCTCAACTTAACAAAAGCACACTTTCAACCATTTTCT TCTCCCCTAAGAAAAAGAAAAACCTAAAAAAATTTCCTTTTGTGATGCGATTTCTCACCTCCCACATAGCAATGTGAAGA TTCACAGAATTCGCCCGTTTTTAGGGTTTGAAGTTCACACCAGGTTCTTGAAGGATGCACGATGGTGAGAGTGAGAGAAT GGGTTAGGTCATGTGCAACTCACATGCAAGGGTCCAACTCAAGTCTCCTCTAAATCGTGAGTAAACTCAATTAAAATCTT CCACATAATCAAAAAAATGTTAGAATTTTGACGAAAAAGAAACGAAAAGACCAAAACCGCAAACAACAAAAAACACCATG GACTCCGATTGCTCATTTCGAAACACAAGAACCCCATTTGGACATTTGCATTAATAGGGGACTAAAAGTGCAATTAAAGC TAAATTGTGTACTTTTAGGTGCTAAATATACATGTTATAAATATAAACGAGACTGTACTAAAAGACACATTTGTCATTTG TAATAAATTTTTAAAGGGTTGTCTAAATGACCCATGATATAGTTTGAGTTAAATAACCCATCATCCAATCACATTAGAGA TAAGTGAGTTGGAAATAAAATAATAAATAAAATATATAAATTCCAACTCACTTATCTCCGATGTGATTGAATGATGGTTA TTTAACCAAAACTATATCATGGGTCATTTAGACAACCCCAATTTTTAAAAGGAAAGATAGAATTTGAGCTGACATGTAGT ATTGAATAAAAATGGCATTATGAAGACAACTCTCACCTTGTTCATATAAATTGTTGATAAAATTTAGGGTTAATGGTCAA ATTGGTCCCTGTCTTTGTAACGACTTTTGATTTTAGTCCCTCCCCGGAAAATATTTAGCGATATCTCCCTGTGATTGCAC GCGTTTTGGTATTAGTCCCATGTGGCACGCTCACGTGTTTAATGAGTGCTACGTGTAATATATATATTTTTTAATTTATT ACACCTCATATTACTAATTAAAATTTAAAAAAAATTATGAAAAACCTAAATGCCCCTAATTAATACCCAGATCACTAAAT CTAAATTCCCCCAAAAATTCCTAAATCCCTAAATCAGATTCCCAACCCCCCTTTTTTTTGTTCAAAAGCTTCTTCCTCCC TTCAACAATCTCATCAAAGAAAGCCTGCAATAATGTTCTCTGGCCCAGATCTGAGAACCCCAAAGATACTCTCATATTCT TCATTATGTATCCCAATCCATAACCACTCCACTTCTCTCTAATTCCCCTCTGAGATCCACCATGGAGATTGAATCAGGAG AAGACTTGCTGCGATTGCTCTCGTTCCAAGGATTGTGGTCTGTTGTTTTCGGTCTTCTCCTAGTGATGGCTGTGTGTTCC TTGTTCTGGTTTCTATGGTTCTGCTCTGTGCCCAGCAGCTCGCGGTCCGTCCTGGAAGTGTTTTTAGTCTAGTTTGCTAC GTTTCTGTTACTTCTTTCCTACCCCTGTAGTTTTTGTTTTTCCCCTGTTTCTTGCTGTGTTGTTTATTTGTTGTTGTTTC CGTTTCTAGTTGTATGAGTTTTTCTACACTGTTACTCTTTTCATATATATATAATTTGATTTGATTCTCAAATAAAAAAC ACTATGTATGGAACGCTTTGGGGATTATGTAGGTTTTGAAAGTTTGGGGATTTTGTGGGGTTTGAAAGTTTGGGGATCAT GTGGGGTTTGAGTTTGGTGTTATGGGTTTTAGTGGTTGTTGGAAATCTGATTTCTAGAGGTGAATGATGATGAAGATTGA AGATGAAGGGTTGAAGGTAGATGAAGATGGATGATAA
CDS sequence (LotjaGi5g1v0054800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATCAAGCTCTTGGTTGCATTAATTCACTACCTCCATGAAACCATGGCCGTCCAAAGCATCATAACAACACCCCT TTTGGTTATTCTCATGAGCCTTCGTTCTTATGCATTCACTGAACCTTCTTTACATAGGCAGCAGCCACCGTCCAAGGGTG GTGTTAGAGCAGCATATTGGCCTGCATGGTCTGATTTCTCAACCTCTTCCATTGACACAAACTACTTCACTCACATATAC TACGCCTTTGTCCAACCTGCACCAGAATCCTTCAACCTCGAAATCACTGAATCCTACAAGAAGTGGGCCCCTAAGTATGA TGGTATCCATAACATCCGCCCGCGGGTGACGACGCTGCTGTCCATCGGAGGGGGTGGCAACAACGCAACCCTCTTCTCAG AGATGGCTAGCAGCAAACAAAACCGTGCGAGCTTCATAAACTCCACCATCCACGTGGCGCGAAAGCACGAGTTCAACGGT CTTGACTTGGATTGGGAGTGGCCAGGAGATGAAAAAGACATGTCTAACCTTGCGTTGTTGTTAAAGGAATGGTACAAGGC TTTGGTGGTGGAAGCTAACACTAGTAGAAAATCACGTTTGCTTTTAACTTCTGCTGTGTATTTTAACTCCACGATTTCAC TTATAGGTAATGGGCCTAGGTCGTACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGCTAGCCCAATGTGTTTTGAT TACAATGGCGCGTGGGCCAACGAAACGGGCTTTAACGCGGCGTTGTATGACCCGAATTCTAACATAAGCACCAAGTATGG TATCGGGTCTTGGATCGGGTCGGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGCGGGCGTGGGAGC TGAAGGATCCGAATGATCATGGGGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGTATGGACTATGAT GAAATCTTGGTGTTTAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTACTCTTATTCGGG CACTACTTGGATCGGGTATGATGATGGACCCTCCATAACGAAGAAGGTTCAATTTGCTCGGTCAATGGGCTTGAAGGGGT ATTTCTTTTGGGCTATTGGGAAGGACAAGGATTGGACCATCTCAAAACAAGCTTCAAATGCATGGGGATACTGA
Protein sequence (LotjaGi5g1v0054800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIKLLVALIHYLHETMAVQSIITTPLLVILMSLRSYAFTEPSLHRQQPPSKGGVRAAYWPAWSDFSTSSIDTNYFTHIY YAFVQPAPESFNLEITESYKKWAPKYDGIHNIRPRVTTLLSIGGGGNNATLFSEMASSKQNRASFINSTIHVARKHEFNG LDLDWEWPGDEKDMSNLALLLKEWYKALVVEANTSRKSRLLLTSAVYFNSTISLIGNGPRSYPVRAIRKYLDWASPMCFD YNGAWANETGFNAALYDPNSNISTKYGIGSWIGSGVPAEKLVMGLPLYGRAWELKDPNDHGVGAKAVGPAVDTDGSMDYD EILVFNKDTGAKVVYDEVAVSFYSYSGTTWIGYDDGPSITKKVQFARSMGLKGYFFWAIGKDKDWTISKQASNAWGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| PANTHER | 17 | 396 | 380 | 2.6E-171 | – | |
| PANTHER | 17 | 396 | 380 | 2.6E-171 | – | |
| Phobius | 19 | 397 | 379 | - | – | |
| SMART | 54 | 382 | 329 | 3.1E-92 | ||
| CDD | 55 | 388 | 334 | 2.69499E-125 | – | |
| SUPERFAMILY | 56 | 384 | 329 | 1.61E-66 | ||
| Pfam | 57 | 382 | 326 | 2.9E-74 | ||
| Gene3D | 69 | 383 | 315 | 7.2E-100 | – | |
| ProSitePatterns | 158 | 166 | 9 | - | ||
| Gene3D | 287 | 353 | 67 | 7.2E-100 | ||
| SUPERFAMILY | 288 | 353 | 66 | 7.59E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Chitin binding | Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. |
Expression pattern of LotjaGi5g1v0054800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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