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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0055000 |
| Transcript ID | LotjaGi5g1v0055000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA(His) guanylyltransferase; TAIR: AT2G32320.1 tRNAHis guanylyltransferase; Swiss-Prot: sp|F4IRQ5|THG1_ARATH tRNA(His) guanylyltransferase 1; TrEMBL-Plants: tr|A0A151R6C7|A0A151R6C7_CAJCA Putative tRNA(His) guanylyltransferase; Found in the gene: LotjaGi5g1v0055000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9342407..9343942) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAATAGTAAATATGAGTATGTCAAGTGTTTTGAGGTTGAGGATGAGGTGTTGTTTCCCAATTTCATCCTTGTTTG GATCAGTGCCTGCAAACTTTGTAAACCTCATGATGTTAATGTCTTGAAATTGATGAACTCTTGCGCTGTCGCGGTGCTTG AAGAGTATGCGGATGTAGTCCTTGCATATGGGTTCAGTGATGAGTTCACTTTTGTTTTCAAGAAGACTTCCCAGTTCTAT GAAAGGCGCGCTAGCAAAGTGTTATCCATCGTCACTTCTTTTTTCTCATCTGTCTTTGTGAGAAAATGGGGTGAATTCTT CCCGCAAAAGAAGCTACAATCTCCTCCGTCGTTCCATGGGCGAGTCATAGCTTGCGCGTCCATAGAAGCTGTTCAAGCAT ATCTTTTTTGGAGGCAAAGTGTCTGTCATTTGAATAATCAACATGACCAGTGCTTTTGGCGTCTTGTTGAACGCGGGATG GATGAGGAGGAAGCGCTGGATTTCATCAATTGTGCTCAGAAACGTGACCTAAATGATCTTTTATTTGATGAGTTCCATGT CAATTACAATGAACTAGAGCCGATATTCCGACAAGGTTCCTGTATTTTAAAGACAGTGGTAGAGGATGTTGTGAAGTACG CAGAGAATGGGGCTCCAATTAAAAGGCATAGGAGAAAGATAATCACTGTGCATTCCAAGAAAATAGCAAGTAAAAGATTT TGGAATGAGCAGACCATTCTTGTGAAGGAGCTTGGTGGTTTCACGGATGAGATTAACAATGTGAAACCAGAGTATGTGAG GTCCTTCGAATTCGATAGCAAGTTGATGCCGTCTACATGGATTGTAGTTCGACTTGATGGATGCCACTTCCACAGATTTT CTGAGATGCATGAATTTGTAAAGCCAAATGATGGTAGAGCTCTTAACCTGATGAATTCATGTGCAGTGGCTGTGGTGGAA GAGTTTAGGCCGGACATAGTCTTTGCCTATGGGGTTAGTGATGAGTATAGCTTCATTCTTAAGCAATCCAGTGATATTTA TCAAAGGAGAGCTAGTAAAATCATTTCAGCTATTGTATGTTTCTTCACATCAACCTATGTGATGAGATGGAAAGATTTCT TCCCACAAAGTGAGTTAAAGTATCCTCCTTCTTTTGATGCACGAGTAGTTTGCTATCCATCAACTAAAATTATAAGGGAC TATCTTTCATGGAGGCAAGTGGATTGCCACATCAACAATCAGTATAACACTTGCTTCTGGAAGCTTGTTGCATCTGGAAA GAGCAAAAGGGAAGCTCAGCATAGTTTGAAGGGTGCACAACTGCAAAAGAAAATTGAGGAATTGGGTATTGACTACAATG AGTTACCAATGATGTTCCGACATGGATCCTCAGTTTTTTGGGACAAGGTAGACAATGTTCTCATTCACCATGAGAATAAT GGAGAGTCTTCTGAAAGTTATGGAAAGGTCATTGTAGAACATATTGACATCATTGGACCAGCCTTTTGGTCGGAACACCC AGGCATCCTTGACTAA
CDS sequence (LotjaGi5g1v0055000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATAGTAAATATGAGTATGTCAAGTGTTTTGAGGTTGAGGATGAGGTGTTGTTTCCCAATTTCATCCTTGTTTG GATCAGTGCCTGCAAACTTTGTAAACCTCATGATGTTAATGTCTTGAAATTGATGAACTCTTGCGCTGTCGCGGTGCTTG AAGAGTATGCGGATGTAGTCCTTGCATATGGGTTCAGTGATGAGTTCACTTTTGTTTTCAAGAAGACTTCCCAGTTCTAT GAAAGGCGCGCTAGCAAAGTGTTATCCATCGTCACTTCTTTTTTCTCATCTGTCTTTGTGAGAAAATGGGGTGAATTCTT CCCGCAAAAGAAGCTACAATCTCCTCCGTCGTTCCATGGGCGAGTCATAGCTTGCGCGTCCATAGAAGCTGTTCAAGCAT ATCTTTTTTGGAGGCAAAGTGTCTGTCATTTGAATAATCAACATGACCAGTGCTTTTGGCGTCTTGTTGAACGCGGGATG GATGAGGAGGAAGCGCTGGATTTCATCAATTGTGCTCAGAAACGTGACCTAAATGATCTTTTATTTGATGAGTTCCATGT CAATTACAATGAACTAGAGCCGATATTCCGACAAGGTTCCTGTATTTTAAAGACAGTGGTAGAGGATGTTGTGAAGTACG CAGAGAATGGGGCTCCAATTAAAAGGCATAGGAGAAAGATAATCACTGTGCATTCCAAGAAAATAGCAAGTAAAAGATTT TGGAATGAGCAGACCATTCTTGTGAAGGAGCTTGGTGGTTTCACGGATGAGATTAACAATGTGAAACCAGAGTATGTGAG GTCCTTCGAATTCGATAGCAAGTTGATGCCGTCTACATGGATTGTAGTTCGACTTGATGGATGCCACTTCCACAGATTTT CTGAGATGCATGAATTTGTAAAGCCAAATGATGGTAGAGCTCTTAACCTGATGAATTCATGTGCAGTGGCTGTGGTGGAA GAGTTTAGGCCGGACATAGTCTTTGCCTATGGGGTTAGTGATGAGTATAGCTTCATTCTTAAGCAATCCAGTGATATTTA TCAAAGGAGAGCTAGTAAAATCATTTCAGCTATTGTATGTTTCTTCACATCAACCTATGTGATGAGATGGAAAGATTTCT TCCCACAAAGTGAGTTAAAGTATCCTCCTTCTTTTGATGCACGAGTAGTTTGCTATCCATCAACTAAAATTATAAGGGAC TATCTTTCATGGAGGCAAGTGGATTGCCACATCAACAATCAGTATAACACTTGCTTCTGGAAGCTTGTTGCATCTGGAAA GAGCAAAAGGGAAGCTCAGCATAGTTTGAAGGGTGCACAACTGCAAAAGAAAATTGAGGAATTGGGTATTGACTACAATG AGTTACCAATGATGTTCCGACATGGATCCTCAGTTTTTTGGGACAAGGTAGACAATGTTCTCATTCACCATGAGAATAAT GGAGAGTCTTCTGAAAGTTATGGAAAGGTCATTGTAGAACATATTGACATCATTGGACCAGCCTTTTGGTCGGAACACCC AGGCATCCTTGACTAA
Protein sequence (LotjaGi5g1v0055000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANSKYEYVKCFEVEDEVLFPNFILVWISACKLCKPHDVNVLKLMNSCAVAVLEEYADVVLAYGFSDEFTFVFKKTSQFY ERRASKVLSIVTSFFSSVFVRKWGEFFPQKKLQSPPSFHGRVIACASIEAVQAYLFWRQSVCHLNNQHDQCFWRLVERGM DEEEALDFINCAQKRDLNDLLFDEFHVNYNELEPIFRQGSCILKTVVEDVVKYAENGAPIKRHRRKIITVHSKKIASKRF WNEQTILVKELGGFTDEINNVKPEYVRSFEFDSKLMPSTWIVVRLDGCHFHRFSEMHEFVKPNDGRALNLMNSCAVAVVE EFRPDIVFAYGVSDEYSFILKQSSDIYQRRASKIISAIVCFFTSTYVMRWKDFFPQSELKYPPSFDARVVCYPSTKIIRD YLSWRQVDCHINNQYNTCFWKLVASGKSKREAQHSLKGAQLQKKIEELGIDYNELPMMFRHGSSVFWDKVDNVLIHHENN GESSESYGKVIVEHIDIIGPAFWSEHPGILD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 5.6E-190 | – | |
| ProSiteProfiles | 1 | 31 | 31 | 5.0 | – | |
| Gene3D | 1 | 251 | 251 | 1.4E-73 | ||
| PANTHER | 1 | 247 | 247 | 5.6E-190 | ||
| Pfam | 6 | 124 | 119 | 3.9E-28 | ||
| Pfam | 130 | 229 | 100 | 3.6E-23 | ||
| Gene3D | 258 | 511 | 254 | 1.0E-102 | ||
| PANTHER | 259 | 510 | 252 | 5.6E-190 | ||
| PANTHER | 259 | 510 | 252 | 5.6E-190 | – | |
| Pfam | 264 | 393 | 130 | 4.1E-49 | ||
| Pfam | 397 | 480 | 84 | 3.5E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Biological process | TRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | TRNA guanylyltransferase activity | Catalysis of the posttranscriptional addition of a guanyl residue to the 5' end of a tRNA molecule; observed for His tRNAs. |
Expression pattern of LotjaGi5g1v0055000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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