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LotjaGi5g1v0061500.1

Overview

Field Value
Gene ID LotjaGi5g1v0061500
Transcript ID LotjaGi5g1v0061500.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:10277112..10281143) extracted from Lotus japonicus Gifu genome v1.2.

CACAATTACAAGTTATGATTAATAAATGAAAGTAGAAAAAAGGGGCAAAATAAATAAATAAATAAATAAATTTAAGAAGA AGAAAAAGAATCCGAGGGTGGTTTGGGAAAGAAAAAGAAAGGCAAAGGTCGAACTCGAACGAAGCAGAAGAGAAGATGTC TGGCAAAGGCGCAAAGGGGTTGTTAACTGGCAGTAAAACCCCAGCTTCCGCCAAAGACAACAAGGATAACAAGAAGAAAC CCACCTCTCGTTCTTCCAGAGCTGGTCTTCAGGTTTACAACGTTTATTTTATCCCATTTTCCAAAGGGTTGATTTTATTT TTTCCTTTTTTTGTTAATTTTTTTACTAAATTTATTTTCATTTAGATTGTTGTTGTTGTTGTTGTTGTTGTGTTTTGAGT GTAGTAACTTAGTCAATTACCAAGAGTAAGAGTAGAAATGTGGTGCATTTTATTTTTATTTATGGGGAACCAAGGGTATT ATTGATATGGGACTTTCCTTTTGAGTAGTTTCCAGTGCTGTCAAATAGTGGATATCGCGGCACTATAGCGTAGCACTCTG AGGGCTCACCAATATCCGCTATTTTCCGCTATGAGGGCTTGACATAGCAGATCTTTGACTTTCCGCTATTGTTCGTGATC TGTGAATAACAATAGTCTAGTTTCTCTTATGATGATTTTGAGTGCCTTTATGCTCGCCAAAGAGCTCAAGTTGTTTATGG TTAAAAGAGGGTGAATTATAGTATTTAAAAGATGCCATACATGTGTTCCCCTAGAATTTATTTGGCTGGCTAAGTTGGTT TTAGGATGCATCATACGATCCTTAGAACATGTCTCCCTGTCCACAATGAGCAGATGTTATGGGAAAATGTACTATGTCCA AGTAATGAAGTAGAGTGTTTTAAACTCAAATATTGTTCTCATGAGGTTCGTGCCAAGTACTAGTTCGATTGCTTCCTTGG TTATTTTGGCTTCATGTTATGGCTGTAGGATTGATAAATTATTTATTGAGAAATTAATAAGAAAATCCACACAAGAAAAC AGGAAAGACACGCTCAAGCGAGGATTAAGTATGGATTACTAAGATGTTTGATTGCACATATGATTTTACCTTGATATCTT TCTTATTCATGTATTGCTTATGATCCTATTCAATAGTCAATCATCCACTCTAATTCAGTTAACATCCATTTCTCATCTGA ATAATGTGTTTGCACTCAAGCACCTTGGTTCTCTTGAAGACTTTTTAGGTATTGAGGTCCAGCACCTCAAAGATGGTGGT TCTCTGCTGCAAACACAGTCTAAATATTCGAGACTACTTGGCTGAGGCTCATATGTCTGAGGCCAAGGGTATTTCTATGA CTATCTTCGGCAATAGCAGACTGTCCATGTTTATAGCTAAGTACTACGTTGAGACCCTATACTTTATCTCTCCATTGTTT GAGCTCTTCAGTATGTGACAATTGCTAGACCAGAGATCAGCTTCTCTGTCAATAAGTTCAGTTTTCATATCAACCACTAG AGGAACACTGGACAACAGTCAAGATAGTGAGTTGTCTAAAGGGTAGAGTGCATTATGGTCTGCTAGTTCAGCCAGCTAAA ATACAGAAGCTACTCTCCCACTGCATTATGTTATGCAGACTGGGCTAAGACCCTGATGAGAGGCGCTCAGTTTCAAGGTC CTGAAGTTATCTTGGGCAAACCTAATTTCTTAGTAGTCCAAGAAATAGAACTTAGCCGCGCAATTCAGCACAGAGGCTGA GTACAGAGGCATGGCACAAATTGCAGCAGAGTTTTTGCGGATTTAGTCTCTTACCGTGTTGCATGTACAATTTCAGACCC ATGTAAGTTGTAATAACCTCAGCAGTGTCTCACTCTTATAATCCTGTCCTTCTCTCTAGGACTAAGCATATGGAGCTTGA TTTGTGTTTTGTCATAGAAAAGGCTCTCAATTATTTTACCATATCCCACTCCCAGCATACCAGCAGTATAGAGACATCTT AACCAAACCTCACACCAGTTCAATTGACTGACTTGAGAAAACTGTGTTCGATTCAGTAACTGATTGGGCTTACTGTATAA ATGCTGTGCATGTAACTCAATTCAGTAATGAAAGTTCAGTTTGAACTTTTCAGAATTCAGCTCCTATAATTCTCTCTATC TATCATCGCGGACCCACTTTCCATCTACTTAACCAAGAACTCCCTAAATTTGAGATTCTGTTGCTGCTATTCATCTGGCA ATTCTTGCTTTATATTAATGTTGTATGCTGTTTATTGGGAAGGGTTCCATCACCATCCAACCTTTTTCCTGTGCTGTTAA TTAATGGTTAGTTTATTTTATGGTTTATTACCTCTAAACATGAGTTCGTTTTGTGCAATTTTTGTAACTTAATTGGAGTT TTTTAATCAAGACTAGACCTTGGCCTGAGATATTCTTGTATGCATGAATGTCTAGATTTCCCTACATGAACTTGGAGGCT AATCCTCTTAATTTTCAATTTTCTAATTGAATTCATATTCCTGCTCCTATTATGAAAAACATAAGTCTAGCAATATCTTA CCTTATGTAAGTGTGATAATCTGCCATTTGTGTATAAAGAATGCAATCAACTGGGCCTAATTGAAGGTACTATGTTTGCT CTGCATTCCTTGTTGCGTGGCTGTGTTCATGTCTTTGTTTTATCTACTTCATAGTGGGTAAACATATGGCTTTAGGGTTA CTAATTCAATGAATTCTCCAAAGTGAGCAGCTTACACATCATAGGCTACAAAATCCAGGAAGCTAGTTCTGTGTTTGATT AGCTTTATCATGCTGCAGAAGGTTCATCTATAATGATGATGTCTTGGTAGTGTCTTGTATCTTTGAATGAGTAATCAGAT CTATAACTGAGTTAGGACTTTTGTCTTTCCACTACTAGTTTTTGTGAGATTAGGGTGGCAGCAAAGTACCTGTGAGTAAT CATAACCAATGTTACAAGTGGTGAAGTTTTTTTTTTATTCTTGGAATTGTGAAATTTTTCCTGGTTTTAAAAGCCTGCTG GATTTTGTGTATGTTTGTTTAGAAGTCCCTTGTATGTTGTTATAATGTTAATTCGTTTATTATCATCTGGTGTGTCATCA TGAATATCTCTTGATACAGTTCCCTGTTGGACGAATTCACCGTCTTCTGAAGACAAGGGTGTCGGCGAATGGAAGAGTTG GGGCAACAGCTGCAGTTTACACTGCTGCTATCCTGGAGTACTTAACTGCGGAGGTGTTGGAGTTGGCCGGCAATGCGAGC AAGGATCTGAAGGTGAAGCGCATTACCCCAAGACATCTTCAGCTTGCAATCCGCGGAGACGAAGAACTAGATACCCTCAT CAAAGGAACTATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAATCTTCAAAGGAATGAGGGT TTATGGATAATTCTGATCACCATGGGAAAAGATGAATTTTAATGTAAATTATGATGATATCTTTCGATTTGTGGATAATC TGCCCTTAGCGGTACATTGACTGAACTATATCCTTAAGTAATCTGAAAATTTCTAGTTTCTTTTATTTGTAGTGTATTAA CTAACGTGGTAACTAATGTGCTATGGTACTGCATGTATCTATGTTGAAATTATGGTCATCTCGTTAATCCAATTTTCTGT GTCAATGAACTGCTAGGCAATAATGGTAGTGGAAGTCTTTTTTTACTTTCGCTGCCAGTTTCACGTTACTCTTGGCAGTT CATAGAGTCAAGATAGAATGTATACGGAAAGAAGAATGCTTAGCTTAAGTTTGTGTCTGGAGGTGTCCTTCCGAGTAATC TGATGTGTTTGGATATCAATTAAATGCAATGACAAAATTCCACAACTCGGTGTGGATTGACCAGGTTCCGCCGGAAGTAG AGTCTTTGGTTCATGCTGATGTATTAGCCTCTTTGGCAACTCGATTTTATCAATGAATTATCTAGTTTCAAAAAAAAAAG TTCAGTCATTCTAGTTTTCATTCCTAATACTC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0061500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGCAAAGGCGCAAAGGGGTTGTTAACTGGCAGTAAAACCCCAGCTTCCGCCAAAGACAACAAGGATAACAAGAA GAAACCCACCTCTCGTTCTTCCAGAGCTGGTCTTCAGTTCCCTGTTGGACGAATTCACCGTCTTCTGAAGACAAGGGTGT CGGCGAATGGAAGAGTTGGGGCAACAGCTGCAGTTTACACTGCTGCTATCCTGGAGTACTTAACTGCGGAGGTGTTGGAG TTGGCCGGCAATGCGAGCAAGGATCTGAAGGTGAAGCGCATTACCCCAAGACATCTTCAGCTTGCAATCCGCGGAGACGA AGAACTAGATACCCTCATCAAAGGAACTATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAAT CTTCAAAGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0061500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGKGAKGLLTGSKTPASAKDNKDNKKKPTSRSSRAGLQFPVGRIHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLE LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 38 38 - –
Pfam
PF00125
14 106 93 4.4E-19
IPR007125
SUPERFAMILY
SSF47113
15 114 100 4.54E-41
IPR009072
PANTHER
PTHR23430:SF263
16 137 122 1.5E-76 –
PANTHER
PTHR23430
16 137 122 1.5E-76 –
Gene3D
G3DSA:1.10.20.10
16 137 122 2.3E-53
IPR009072
SMART
SM00414
17 137 121 4.0E-70
IPR002119
PRINTS
PR00620
28 50 23 2.7E-43
IPR002119
CDD
cd00074
29 133 105 1.90505E-56
IPR002119
ProSitePatterns
PS00046
36 42 7 -
IPR032458
PRINTS
PR00620
58 73 16 2.7E-43
IPR002119
PRINTS
PR00620
73 86 14 2.7E-43
IPR002119
PRINTS
PR00620
87 101 15 2.7E-43
IPR002119
Pfam
PF16211
107 136 30 9.0E-11
IPR032454
PRINTS
PR00620
114 132 19 2.7E-43
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0061500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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