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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0124500 |
| Transcript ID | LotjaGi5g1v0124500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT4G29040.1 regulatory particle AAA-ATPase 2A; Swiss-Prot: sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A; TrEMBL-Plants: tr|A0A0R4J302|A0A0R4J302_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0124500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:27009158..27014993) extracted from Lotus japonicus Gifu genome v1.2.
GAGCACGGCATTGCTTTATTTATAGTGGACTTAATAGGATTCATAGGAAGATTTTCCGAAGCACCAAAAAAAAAAAAGGA TTCATAGGAAGGAATCGAGTAAAAAGGTTTTGAATCGTCGGAGTGAGGCGAGAAGAGAAGAAAAACTTTACCTTGAAATT GGAAATCGATGGGTCAGGGAACACCGGGTGGTATGAACCGGCAAGGTCTTCCGGGCGACCGGAAGCCCGACGGAGGCGAC AAGAAGGAAAAGAAGTTCGAGCCAGCGGCGCCGCCGGCACGGGTGGGCCGCAAGCAGCGGAAGCAGAAAGGTCCAGAGGC GGCGGCACGTTTGCCGACAGTGACTCCGGTGACGAAGTGCAAGCTAAGGCTTCTCAAGCTGGAGCGAGTGAAGGACTACC TGTTGATGGAGGAGGATTTCGTGGCCAATCAGGAGCGCCTCAAACCTCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAG GTTGATGATCTCAGAGGATCCCCCATGAGCGTCGGTAACCTCGAAGAGCTCATCGATGAGAATCACGCCATTGTTTCCTC CTCGGTTGGGCCTGAGTACTATGTTGGAATCCTGTCTTTTGTCGATAAGGATCAGTTGGAGCCCGGTTGTGCTATTCTGA TGCACAATAAGGTAATCCTAATTTACTTTTTCTGGTGTTGAATTTTGTTCATTTGTTATTGGAATCGAATCCCTAATAAT CTTCGCTTCTAGGGTTTAGTAGATAGGTTATATGTTTCTAAAGGGTTGGATTATAAATTGAACTGCAGAGGACCTTGTTC CTTTGTTGAAAGACATGATGTTATCTTTGTCAACCATACTAAGTTCCTTAGGTTGGTTGATTCAACAAAAATTATGGGAG GGTTGAGAGTAACTTAATTGTATTTCTACTCACAATTTTGTCTCTCCTATTACACGAGAGTGAGTTGTGACATGGGAGTA ATTTTGTTCTTTCTATCGGCATGTAACATTGAGTCAAAATCAAAATCTTTCCATTTCTGTTCATTTGCTGTTCCCTGGTG ACAAAAAAGATTTATAGCATGGACTATGAAGTTTTAAATCTTGGATATGTAGTTGGATTTTAAAACATTCGAATGTTAGA GTAGATTTGAGATATTATATGCTCCTCTTTTTTAATGTAGTCAGGAAATGGGAGTCACTAAGAATTGTTTAATAATCTGC ATAATGCATAAAAAAAGAAACAATCTTGTCCTTTTGAAGAGATAACAAGCTTAATGTGTGGGATACAATACCGCATTGTA ATTGATTTAGGAACCTGAACCTGGTAACTGAATGGGAAAAGTTGCGGTTGAAGTATTCTTTTAAACCATAGCATCACCTT GAAATTGACATGATTGTTTTTACTTGGTTGTCTAATTGAATCATTCATCTCTTGTCCATATGGTTAGATGCCGATGATCT AATGATTATGTATGGTTTTCTATCAGGTTCTCTCTGTTGTTGGCCTTCTGCAAGACGAAGTTGATCCAATGGTCTCTGTG ATGAAGGTTGAGAAGGCACCTTTGGAATCTTATGCTGACATCGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGC AGTTGAGCTCCCCCTGACACATCCGGAACTCTACGAAGACATTGGTATCAAGCCTCCCAAGGGTGTCATTTTATATGGAG AACCGGGAACAGGGAAGACTTTGCTTGCTAAGGTTTGCATCTATTCATGTTTTATAGGGTTTCACCACATTATTTCTTGT GTCTCATTTTTTCCTCTTCACTTTAAGTTGAGTGGCTGAGCATGCTCCGCAATTGCAATGAGTTGATACTATTGAGTTCA GATTGCTCTTCTTTAGTGTATATGAACTAGGGATCTGTTTGATTATCTGGTCGGTACAGTTTGGAAATCACTCTATTTCT GCATTGTTTATCATGTTACTTTCACGAATTCTCATGTTATATGCTAGCTAATCTTGGCCTTTTACAGGCCCTGGAGGGCA TTTTCTTGGATGATTGCTTTTTTATTTTTAGCTTTTCATAATACATGTGCCAAAGGAATTGGCTTTTGGGTGTTATGATG AAAGTCTTTCTCTGCATGTGTTGGGTTTTGAACTGTTTCCGGTTGGCTTTACAGCTTACGGCTGATGCTGTTAAATATGA CTAATATACATTGTTATTGGAGAATCATGTTATCATGTGGGTTTTATCCTGTGTGTGGTATGTGTTAGCTTATAAATACT GTACCCTCTTTTGAGGGTAGTTATATTGCAGAGTACGCAATTGATTTTGCAAAAGGTAATAGTTATATGGAAGAAGTATT TGACAGTCTCATCTTAAAGTTCGGAACCCTTCCAGGTAGTAGGAATTAACAGTGAAACTGTAATATCAGAGTACACAATT GGTTTTGCAAAAAGGTAGTAGTTATAGATATGGAAAAAGTATGTGACAGTCTCATATCAAAGTTCACAACCCTTCTCGGT GGCAGGAATTACACTAAAACTGTATACGAAATTTATAGTTTGTATAAGGATTTGTGTCATATGACTATATGATCTACATT AATTTTTTGTTGCTTCTAATTTATTATGTAAGCACATATGCACTGTCATTTAGATCTAAGATAATGACTTGTTTGCTTTC AGGCTGTGGCAAACTCAACATCGGCGACTTTCTTACGTGTTGTTGGTAGTGAATTGATACAAAAATACTTGGGAGATGGT CCAAAACTTGTGAGGGAACTTTTCAGGGTTGCTGATGATCTTTCACCTTCTATTGTCTTCATTGATGAAATTGATGCCGT TGGTACAAAGAGGTGAGTTATTGAACACCCAACCTTAGGAGTAATGTAGGTGAGGTGAAAGATCTTAGGATGGTTTACCT ACATTATGAGCTTACTTATTTATATGTCTTACAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACCATG TTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCAACCAACAGAATTGAAAG TCTTGATCCAGCTTTGCTACGACCTGGTCGAATCGACAGGAAGATAGAATTTCCTCTACCTGATATCAAAACAAGGAGAC GCATTTTCTTGGTAGGCATGACTGGTTTCATAAAAGCAACTGACTTAATGCTGATATCTCTATGCCTATCCTGTTTGATC ATATACGACTAAATGAATTTATGCTTTGGAATTCAGATACACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGA AGAATTTGTTATGACTAAGGATGAATTTTCTGGAGCTGATATAAAAGCAATTTGTACTGAAGCTGGCTTACTTGCTCTCC GAGAACGCCGAATGAAGGTCAGAAGTTTCTTCATGATTCTGTTGTTTATATAATAGATTAATAGCTGCTAGTTTTGACAA GCTCATTTTAATATGGTCCAAAATCCAACTATATTAAGCTAAGATAAAACTATAGCACAGTTTGATTTCTCCTGTTTAAA CATTCCAAACTTTGGAAACCTACATAATCGAAGGATGAGCAGCATACAATGGAGGGGGTTGTGATGCTCGAAAAATTGTG GAGGGAAAGGAAAATAATATACCGATCCATAAGTCTGTTTCAGTGAATTTAGAGAGGTAAAGAATAAGTATGCTGCTCTA GTCACACATACCCAGATAGACGTAGTTGATTGTGCGTGTTGGTTTTTGTTCGGATTTGGGGGGTATTAAACAACAATTGT TATATTACTTAATCTATGAAATGTGCATGACATCCTTAAAACCGAAATACTAAAAGAAGAACAAGAAATAAGAAAATTAT ATATTCAATTTAAAGAGAAACAATTTAAAGTGAATGAAATCTGTCAATTCAGTCTCTTAGGCTATGTTTGGCATGCCATT TCAGCTAGCTTATAGCTTATTTGTCTAGCTTAAAACTTATTTGACAAGCTTAAAAGTTCTATAGAAGTGTTTGGTGAATG AGTTTATTTCAGTAGCTTAAAGCTTAAAGCTATAAGCTATCTCAGGTAGCTTAAAGCTTATTAAATGAATTTTCATTTTT AAACTTATTATTTTATTAAAATTCCACCTTTAGCCTTATATTTTTTTTACTAAACCTATTTACTAATCAGTTATCACGCT TATCTCATATGCACACCATTCCCGCACACAAATAATTACTACTTTGGAATAAAACAAATAATTTTATATTACAAATTATT AATTATTTATTTTATTCTATTTAATTTAATAAAAATATATAAAATTAAATAAGTAAAAATTAATATTATATTTTTAAGAT GATAAATAACTCGAGTGAAATTAAAATATTTATAATAATTTTAATATTAATATCATATAGGTATGAATGTGAAAATAAAG TAATGTTAAATATAAAAAGAATTATACATGTCCTTTCATGTCATTTTACAATTTCAGCTTGTTCAATAGCTAGTTTTACC AAACACTTTTGTTCTAATTATGTAGTTTTTCAGCTCTCAGCTCTCAGCTATCAGCTTTCAGTTATCTTATCAGCTAGACG TGCCAAACATAGCCTTAATACTTCATCACAAGAAGTGTGCAAGCAAAGGATAAGTAACATGCAGTAGTAATTAGATTAAT TTAGAATATAACATGAATAGTCATACTTGGCCACTGAGGGATGGCTCGATTCTAGTGGGTGATCCTTCATTGATAGGTTA TATGAAAGGATTAAACCCTCACTAAGGCTTGTCTTGTTCTTGGTATTCGACAACATACACTACCTAAAATTTTCTAACAA ATACTTCACATTTCATTAGAAATATATGCACACATTCTTGTCAAATTAATCCTTATTGAAATTATTCTTCTCTTTACCTA TCAAAATTTTCTGCTTGTTTGCATACTGCTCTGTTTATTTTTCCTCCAACTTATGGTATCTTACAACTACTTTTATACCT TCTTGTTTAGGTGACGCATGCCGACTTTAAGAAGGCAAAGGACAAAGTAATGTTTAAGAAGAAAGAAGGGGTGCCAGAAG GACTGTATATGTGAAATAGCATCCTCTATTACCCCAGGCTCTCATTCTTTTTCTTTGGTATTTATGTTCTTGTTATGCAA ACAAATGCCAACTCGTTTGTCTTATCAAAGTTGAGTTTCATCCATTTGCTGTATTCCGGATGAAGTCAGTCATGGGGGCA GTTTAATCTCAATTATGATTATTTTAATTCAATATAGGTTTTCGTTCGATTTTATTGATTTTGGATATTGTCCCAATTTT AGGGTATAGCGACCCATGAAGTTGCTTTTCAGGTAAAAGTGTTACCTGTTTGTTATTGGCAATCGTTAATGGTCAAATTA GTTTCTGTCTTTGTAGTGAGTTTTGAATAGTCCCTCCCCAGAAAATATTAAGCGATTTCACCCTGAATTTTCACGTTTTT TTGGTATTAGTCCTTGCCGGAGGTCTCACGGGATGGTGGAGATCCGGTGAGGTTGCCCATTGGCATATCAATGCCTATGT GGCTTGCCACATGTAATTTTTAATTAAATTTTTTATTCCACATGTGTAATTAATAATTAAAATAAAACAAAAATTCATCC CTTAATTCTATGTTTAACTTTAATCTTTTATCTTCTCAAGTGCATAGAATCTACCCGGTTTTAATTTATCGAATCACAGG GAATTGGAATGCGAATTCATTTTAAGATTCATGTTTAAGGTTGGAAAACAACTAAAATTCAGTTTTAAAGGTTGATTGTT GTGTGAAATTCAGATGCCTTGGATTCTTGCTCAACTAATTCAGTTTTAGCAAACCTTTTCTACTCATAAAGTTCCG
CDS sequence (LotjaGi5g1v0124500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGGGAACACCGGGTGGTATGAACCGGCAAGGTCTTCCGGGCGACCGGAAGCCCGACGGAGGCGACAAGAAGGA AAAGAAGTTCGAGCCAGCGGCGCCGCCGGCACGGGTGGGCCGCAAGCAGCGGAAGCAGAAAGGTCCAGAGGCGGCGGCAC GTTTGCCGACAGTGACTCCGGTGACGAAGTGCAAGCTAAGGCTTCTCAAGCTGGAGCGAGTGAAGGACTACCTGTTGATG GAGGAGGATTTCGTGGCCAATCAGGAGCGCCTCAAACCTCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAGGTTGATGA TCTCAGAGGATCCCCCATGAGCGTCGGTAACCTCGAAGAGCTCATCGATGAGAATCACGCCATTGTTTCCTCCTCGGTTG GGCCTGAGTACTATGTTGGAATCCTGTCTTTTGTCGATAAGGATCAGTTGGAGCCCGGTTGTGCTATTCTGATGCACAAT AAGGTTCTCTCTGTTGTTGGCCTTCTGCAAGACGAAGTTGATCCAATGGTCTCTGTGATGAAGGTTGAGAAGGCACCTTT GGAATCTTATGCTGACATCGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTCCCCCTGACACATC CGGAACTCTACGAAGACATTGGTATCAAGCCTCCCAAGGGTGTCATTTTATATGGAGAACCGGGAACAGGGAAGACTTTG CTTGCTAAGGCTGTGGCAAACTCAACATCGGCGACTTTCTTACGTGTTGTTGGTAGTGAATTGATACAAAAATACTTGGG AGATGGTCCAAAACTTGTGAGGGAACTTTTCAGGGTTGCTGATGATCTTTCACCTTCTATTGTCTTCATTGATGAAATTG ATGCCGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAACGTGAAATTCAAAGGACCATGTTAGAGTTGCTGAAC CAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCAACCAACAGAATTGAAAGTCTTGATCCAGCTTT GCTACGACCTGGTCGAATCGACAGGAAGATAGAATTTCCTCTACCTGATATCAAAACAAGGAGACGCATTTTCTTGATAC ACACATCGAGGATGACATTAGCTGATGATGTCAACTTGGAAGAATTTGTTATGACTAAGGATGAATTTTCTGGAGCTGAT ATAAAAGCAATTTGTACTGAAGCTGGCTTACTTGCTCTCCGAGAACGCCGAATGAAGGTGACGCATGCCGACTTTAAGAA GGCAAAGGACAAAGTAATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTATATGTGA
Protein sequence (LotjaGi5g1v0124500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQGTPGGMNRQGLPGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPVTKCKLRLLKLERVKDYLLM EEDFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGAD IKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 446 | 446 | 3.1E-303 | – | |
| MobiDBLite | 1 | 55 | 55 | - | – | |
| PANTHER | 1 | 446 | 446 | 3.1E-303 | – | |
| MobiDBLite | 17 | 35 | 19 | - | – | |
| TIGRFAM | 82 | 433 | 352 | 1.1E-139 | ||
| MobiDBLite | 90 | 110 | 21 | - | – | |
| MobiDBLite | 90 | 108 | 19 | - | – | |
| Gene3D | 113 | 180 | 68 | 3.2E-28 | – | |
| Pfam | 115 | 165 | 51 | 4.4E-7 | ||
| Gene3D | 181 | 361 | 181 | 1.6E-65 | – | |
| SUPERFAMILY | 189 | 439 | 251 | 1.7E-65 | ||
| CDD | 194 | 361 | 168 | 1.8593E-26 | – | |
| SMART | 224 | 363 | 140 | 3.6E-20 | ||
| Pfam | 228 | 361 | 134 | 3.4E-40 | ||
| ProSitePatterns | 331 | 349 | 19 | - | ||
| Gene3D | 363 | 434 | 72 | 1.3E-23 | – | |
| Pfam | 383 | 427 | 45 | 2.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Biological process | Protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi5g1v0124500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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