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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0129400 |
| Transcript ID | LotjaGi5g1v0129400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A178U8C0|A0A178U8C0_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0129400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:29299391..29301545) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTTATGCCTTTTGGTTTAACTAATGCACCTAGTACTTTTATGAGACTAATGAACCATGTTTTGAGGGAATTCATTGG GAAATTTGTGGTTGTGTACTTTGATGATATTTTGGTCTATAGCACTACTCTTGAGCTGCATGTTGAGCACTTAAGATCTG TCTTGAGTATGCTTAGAAAGGAACAATTGTTTGCCAATCTTGAGAAATGCACTTTTTGCACTGACCATGTTGTGTTTCTT GGTTTTGTTGTGAGTTCGAAAGGAGTGCAGGTTGATGAGGAAAAGATCAAAGCCATTCAAGAGTGGCCCACTCCTAAATC CGTGGGTGATGTAAGAAGTTTTCATGGCTTGGCCAGTTTCTACAGGAGGTTTGTTAAGGACTTTAGTACCTTGGCAGCAC CCCTAAATGAAGTGGTGAAAAAGAATGTGGGTTTTCATTGGGGAAAGAATCAAGAAGAGGCCTTTGCTGCCCTAAAGCAT AAGCTTACCCATGCACCTATACTTGCTTTACCTAACTTTGCTAAATCTTTTGAACTTGAATGTGATGCTTCAAATGTAGG TATTGGTGCTGTGTTGCTTCAAGAAGGCCACCCAATTGCTTATTTTAGTGAAAAGTTAAGCGGAGCTGCCCTTAACTATT CTACTTATGATAAGGAATTGTATGCTTTGGTGAGAGCTTTGAAGACTTGGCAGCATTATCTTTTGCTCAAGGAATTCGTG ATTCATAGTGATCATGAGTCGCTGAAATACTTGAAGGGGCAAGGTAAGTTGAACAAAAGACATGCCAAATGGGTTGAATT TTTGGAACAATTTCCCTATGTCATAAAACACAAAAAAGGGAAAATTAACATTGTGGCTGATGCTTTATCCAGGAGACACG TGTTGCTTTCCATGTTAGAGACTAAATTGCTAGGACTTGAACATGTGAAAGAAATGTATGAAAAAGATGATAACTTTGCT GAAATTTTTGTGGCTTGTGAGAAAGTTTCTCAAAATGGATTTTATAGGCACAATGGATTTTTATTTAAGGAAAACAGGTT GTGTGTGCCTAAAAGTTCCATTAGAGAACTGCTTGTTAAAGAATCCCATGCTGGGGGATTAATGGGTCATTTTGGAGTCC AAAAGACTCTAGAAACTTTACAGGAACATTTCTATTGGCCCAAAATGAAACATGATGTGATCAAGTTTTGTGAACATTGC ATTGTTTGCAAGAAGGCTTAAGTCTAAGGTGATGCCACATGGTTTGTATACTTCTTTGCCAATCCCTGAATACCCTTGGG TTGACTTGTCTATGGACTTTGTTTTAGGCCTCCCTAGAACAAAGAATGGTAAGGATTCCATTTTTGTGGTTGTTGATAGG TTTTCAAAAATGGCTCACTTTATTCCTTGCAGGAAAGCTGATGATGCTTGTCACGTTGCTGATTTGTTCTTTAAAGAAGT TGTAAGACTTCATGGGATGCCTAGAAGCATAGTTAGTGATAGGGACACCAAGTTCCTAAGTCACTTCTGGAGGACTTTAT GGGGGAAGTTAGGCACTAAACTTTTGTTCTCTACCACTTGCCACCCACAAACTGATGGGCAAACTGAGGTGGTTAATAGG ACCCTAGGCACCTTGCTTAGGACTGTCCTTAAGGCCAATTTAAAGGCTTGGGAGGCGTGTTTGCCTCATGTTGAATTTGC TTACAATAGGGCTGTCCATAGCACTACAATTTGCTCTCCATTTGAAGTAGTGTATGGATTTAACCCTTTGACTCCTCTTG ATTTGTTGCCTATGCCTAACATTTCTGTTTTCAATCACAAGGAAGGACAGGGCAAAGCTGAATATGTCAAGAAGATGCAT GAGCGTGTGAAGGCTCAAATTGAGAGAAAGAATGAGAGTTATGCTAGGCAAGCTAACAAGGGAAGAAAGGAGGTGGTGTT CCAACCCGGAGATTGGGTTTGGGTGCACATGAGGAAGGAAAGGTTTCCAGAACAAAGGAAATCCAAACTCCAACCTAGAG GGGATGGACCTTTTCAAGTGCTTGAGAGAATCAATAACAATGCCTACAAAATAGAGCTTCCAGGTGAGTATAACATCAGC TCAACCTTTAATGTCTCTGATTTATCTCTCTTCGATGCAGATGGAGGAGAATTTTGATTTGAGGTCAAATCCTTT
CDS sequence (LotjaGi5g1v0129400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTTTGGTTTAACTAATGCACCTAGTACTTTTATGAGACTAATGAACCATGTTTTGAGGGAATTCATTGGGAAATT TGTGGTTGTGTACTTTGATGATATTTTGGTCTATAGCACTACTCTTGAGCTGCATGTTGAGCACTTAAGATCTGTCTTGA GTATGCTTAGAAAGGAACAATTGTTTGCCAATCTTGAGAAATGCACTTTTTGCACTGACCATGTTGTGTTTCTTGGTTTT GTTGTGAGTTCGAAAGGAGTGCAGGTTGATGAGGAAAAGATCAAAGCCATTCAAGAGTGGCCCACTCCTAAATCCGTGGG TGATGTAAGAAGTTTTCATGGCTTGGCCAGTTTCTACAGGAGGTTTGTTAAGGACTTTAGTACCTTGGCAGCACCCCTAA ATGAAGTGGTGAAAAAGAATGTGGGTTTTCATTGGGGAAAGAATCAAGAAGAGGCCTTTGCTGCCCTAAAGCATAAGCTT ACCCATGCACCTATACTTGCTTTACCTAACTTTGCTAAATCTTTTGAACTTGAATGTGATGCTTCAAATGTAGGTATTGG TGCTGTGTTGCTTCAAGAAGGCCACCCAATTGCTTATTTTAGTGAAAAGTTAAGCGGAGCTGCCCTTAACTATTCTACTT ATGATAAGGAATTGTATGCTTTGGTGAGAGCTTTGAAGACTTGGCAGCATTATCTTTTGCTCAAGGAATTCGTGATTCAT AGTGATCATGAGTCGCTGAAATACTTGAAGGGGCAAGGTAAGTTGAACAAAAGACATGCCAAATGGGTTGAATTTTTGGA ACAATTTCCCTATGTCATAAAACACAAAAAAGGGAAAATTAACATTGTGGCTGATGCTTTATCCAGGAGACACGTGTTGC TTTCCATGTTAGAGACTAAATTGCTAGGACTTGAACATGTGAAAGAAATGTATGAAAAAGATGATAACTTTGCTGAAATT TTTGTGGCTTGTGAGAAAGTTTCTCAAAATGGATTTTATAGGCACAATGGATTTTTATTTAAGGAAAACAGGTTGTTTTC AAAAATGGCTCACTTTATTCCTTGCAGGAAAGCTGATGATGCTTGTCACGTTGCTGATTTGTTCTTTAAAGAAGTTGTAA GACTTCATGGGATGCCTAGAAGCATAGTTAGTGATAGGGACACCAAGTTCCTAAGTCACTTCTGGAGGACTTTATGGGGG AAGTTAGGCACTAAACTTTTGTTCTCTACCACTTGCCACCCACAAACTGATGGGCAAACTGAGGTGGTTAATAGGACCCT AGGCACCTTGCTTAGGACTGTCCTTAAGGCCAATTTAAAGGCTTGGGAGGCGTGTTTGCCTCATGTTGAATTTGCTTACA ATAGGGCTGTCCATAGCACTACAATTTGCTCTCCATTTGAAGTAGTGTATGGATTTAACCCTTTGACTCCTCTTGATTTG TTGCCTATGCCTAACATTTCTGTTTTCAATCACAAGGAAGGACAGGGCAAAGCTGAATATGTCAAGAAGATGCATGAGCG TGTGAAGGCTCAAATTGAGAGAAAGAATGAGAGTTATGCTAGGCAAGCTAACAAGGGAAGAAAGGAGGTGGTGTTCCAAC CCGGAGATTGGGTTTGGGTGCACATGAGGAAGGAAAGGTTTCCAGAACAAAGGAAATCCAAACTCCAACCTAGAGGGGAT GGACCTTTTCAAGTGCTTGAGAGAATCAATAACAATGCCTACAAAATAGAGCTTCCAGGTGAGTATAACATCAGCTCAAC CTTTAATGTCTCTGATTTATCTCTCTTCGATGCAGATGGAGGAGAATTTTGA
Protein sequence (LotjaGi5g1v0129400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFGLTNAPSTFMRLMNHVLREFIGKFVVVYFDDILVYSTTLELHVEHLRSVLSMLRKEQLFANLEKCTFCTDHVVFLGF VVSSKGVQVDEEKIKAIQEWPTPKSVGDVRSFHGLASFYRRFVKDFSTLAAPLNEVVKKNVGFHWGKNQEEAFAALKHKL THAPILALPNFAKSFELECDASNVGIGAVLLQEGHPIAYFSEKLSGAALNYSTYDKELYALVRALKTWQHYLLLKEFVIH SDHESLKYLKGQGKLNKRHAKWVEFLEQFPYVIKHKKGKINIVADALSRRHVLLSMLETKLLGLEHVKEMYEKDDNFAEI FVACEKVSQNGFYRHNGFLFKENRLFSKMAHFIPCRKADDACHVADLFFKEVVRLHGMPRSIVSDRDTKFLSHFWRTLWG KLGTKLLFSTTCHPQTDGQTEVVNRTLGTLLRTVLKANLKAWEACLPHVEFAYNRAVHSTTICSPFEVVYGFNPLTPLDL LPMPNISVFNHKEGQGKAEYVKKMHERVKAQIERKNESYARQANKGRKEVVFQPGDWVWVHMRKERFPEQRKSKLQPRGD GPFQVLERINNNAYKIELPGEYNISSTFNVSDLSLFDADGGEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 275 | 275 | 1.03E-103 | ||
| Gene3D | 1 | 89 | 89 | 1.2E-31 | ||
| Pfam | 1 | 81 | 81 | 4.5E-17 | ||
| ProSiteProfiles | 1 | 82 | 82 | 12.627 | ||
| CDD | 1 | 82 | 82 | 2.61852E-36 | – | |
| PANTHER | 21 | 345 | 325 | 1.1E-269 | – | |
| PANTHER | 21 | 345 | 325 | 1.1E-269 | – | |
| Gene3D | 96 | 289 | 194 | 2.6E-69 | ||
| Pfam | 145 | 239 | 95 | 1.4E-33 | ||
| Gene3D | 167 | 276 | 110 | 2.6E-69 | – | |
| CDD | 176 | 291 | 116 | 6.92342E-57 | – | |
| ProSiteProfiles | 302 | 473 | 172 | 14.667 | ||
| Gene3D | 344 | 513 | 170 | 1.9E-44 | ||
| Pfam | 345 | 428 | 84 | 3.0E-9 | ||
| SUPERFAMILY | 345 | 471 | 127 | 8.5E-29 | ||
| PANTHER | 346 | 599 | 254 | 1.1E-269 | – | |
| PANTHER | 346 | 599 | 254 | 1.1E-269 | – | |
| Coils | 502 | 529 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | DNA integration | The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. |
Expression pattern of LotjaGi5g1v0129400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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