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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0194500 |
| Transcript ID | LotjaGi5g1v0194500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT5G62260.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|Q9LVB0|AHL6_ARATH AT-hook motif nuclear-localized protein 6; TrEMBL-Plants: tr|A0A151U5L7|A0A151U5L7_CAJCA Putative DNA-binding protein ESCAROLA; Found in the gene: LotjaGi5g1v0194500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48934788..48942048) extracted from Lotus japonicus Gifu genome v1.2.
TTTTATATATTTTTAAAAATAGATATACACAATATTTCACTTATTATTTTTAATTCACTCAGCCTGCAATTTCCATAGAT GATTTGAACTGGTGGTCCTTGGTATCTAGCTTACATACAGTAAGTACAGTAGTACACATCACAGATATGAAGATATAGAG ATGACATATTATGAACATCATAAATAAATGAACTGAACAAACATATCATGGATCTCATGTCACAACTCAACCCAATTTTC TGAGAACATGACATATTACTGTCTCTTTCTTCCTCTTTTCTTTTTGTGATAAAAAGGGTGAGTTTCAGGACATGGTCCTT TAAGTCAACAGAACCCGTGAACAAGGAGGAGAAAAGGGGGAGAAAGAGAAGAAGAACAACTGAGAGAAGAAGATGCGTTT ACAGTGGCAATTGCAGTAGATTCACCAAACCAAGAGGGGCATTTCAAACTTCAATTTTTCTGTCCTTTTAAATTCATGCA TTTGAGTTTTCTTAGTCAACTTTAATTTAATTTAACTGAAAAGACAAAGAACTTGTCAGTAGTTGGGAAAATGTAATGGT TCTTATCTTAACTTTACAGCTTTGAATAATTTTTTAAAACAAAAACTTTAATTAAATAAATGCCAGTTTTCCATTAAAAT AATGCCAATTTCTTTCCTTTTCAAAAATGGTACACATTTTTATATTGCATTCAAATTAAGTATCTGCATTCACAGCCATT TATTAAATCACCTTTATTAAATTTCCAAGACGGACGTGAACCATTTTCTTAACCAAATTTTATACTTTCAAATTTACAAT TAAAATATTAATTCATAATTAAATTCCCAATATTTAATTACTTTATTTTAATATTTATTTATTTTCCCAAATTTTTTTTA TCGACTTTATTTATTTACTCCAACCTTTTCCTGCAAAACCCTAAATTCACATACCACTCAGGAGAATTTCCAAACCACAG TTTGTATTTTTCTCCATTATTCCATAATTTTTTCCTGTAATTTCCATGTTAATTTCAAAGCTTTTTGTGTTCTCTTCAAT GGTGTTGATTTCAGCTTGTTGAGCTGCAATTTTCTTGGAGACCAAAGCTCAACTGCTTCAATCTCACTTCTGGGTCTCCT TGTTTATACAAAAAGTTTCTATTTTTGAGGTTTCTGTGTTGCTGTAAATTTTTCAAAAACTCTAGATTTTTCTGAATTTT TTGAGTGATTGGGTGTGAAAACGTTTGAATCTTGAATGGGAAGGGTTTAAGCGAAGTTTCAAGGTTTTGGGGTGTCTTAG TTTTCTTTGATTTGCTCAAAAATGGAGGAAAGAGAAAATTTTGGTGGTGGTGGTCATGGAGTGGTGCGTGATGAGGCTCC AGGGAGCTTCCACGTGGCTCCGAGGATTGAGAACAACTTGGATTTTTCCCGGGCTATGGTGCCGGCGGCGACGCCGGCGG TGACGGAGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGACCTGATGGCAGGGCAATACCAGGTGCAGCAGCTGCAGCT GCAGCAACGCCTCTTTCTCCGATGCCGATTTCGTCTTCGATTCCGTTGACCGGAGATTTCTCTGCCTGGAAGAGGGGTAG AGGGAGACCTGTTGAATCTATTAAGAAGTCATTCAAGTTGGATTTTGAAAGTCCAGGTCCTCCAGCTGCACCAGGACCAG GTATTATATATTGTTCTTTGATGTTCTGAATTTCCACTCTGAAATGAAATTAAAGAAACCCTTTAATCTAAGTTTAAGTT ACTACCTTGTTTGTTTTTTATTGTTTAGTTGTTTACTGTTACAATTGTTGCTAAGATATTGTTTCTACTGTTACATTTGG AGGTTCTGAGAAATGATTGTAGGAGGAGTCTTAATAAATGAGTGAATCCTTATTGGCTCTTGTCATTTAGCTCTTCAATG GAGGAATGGATATCATAACTCATAAGTCATTTTTTTTATTGTTAATTATTTGCTTTAGGTTCTAATTGATCTGGTTAGTT ATCTTCTCTGATCTATGTTTTTAGTTTTTGGGATTTAATTTTTGCTTTTGTGATAGTTTATATTTTTGAATGAGGGGAGG GGGGAGGGGGGGTGGACCCTTAACTCAGATTCCTTTTCAGATCTTAATACAAATTGTGAGGTGGATGAGGATATTTTGTG GTTGACAGTGAGGTTGGTTTTTATTTTCGGATAGTATGTATTGGTGGTACCTGTTTATTTTCCTTTATGAGAAGAGGATA AGGGTTGCATTACCTGACCAAGTAAACAATTAGAGTAAATGAAGGACCAGCTTACTCATAATTTTGTTAGCTGGTTCGCT ACGCTTGGACTGGTCTAAACTCTAAATTACTAATTATTATTAACAGTTTAGTAACTTCCATGTGGATATTGGCTATATCT GAAAAATGGGTTGCAAAATAGGAGTTTTGGTCTGAAATATTTCCAAAAATTTGAACTTGTCCATTGAGTATCTGAAGAGT AGCTTCTTAGAATGGTAGTGACTTATGCCCATTAATATATCAGTCAAATGTAATGAAAATATTGTTTAAAGTTCATGGAG TAACTTTTTGTCTCCTATAGGTATGTTTGGATGGAGAGTGTAAGGGAAGGTTTTAGGGGGACCTTCCTCTGCGTGGAAGT TTTATGAAAAGAGACAGGGAATGTGGTATTTTCATGGGATCATTTAAAACACTCCCTTATTTTTCTTTTTTTTTTACCTT CTTTTGTTTTGAGCATTAAATACTGTCCTGATTTTGGAGGATTTATAGACGTTAAAAAATAGAAAGAAGACAAAAATTCA CTCAATCCGTCGTTCTCTTCATGTTCCTTTCTTGTTTTTTTTATTGGGGGGCGAGGATGTTCTATATGGGCACAATATCT TTCCGCATGATGAACTTGCTGACTTCTACATCTAAATAAGATCTGGGTTCCTGTATTGTTTATGAGGTTTGGCGCTCTGT CTTTTAATGTTCCGAAGGAGGTCTTGAGGGCCATTACGTAAGTGGATTATTTTTGGACATGATTATTGATTACTGAAGCA GAGTAGATCTCATGTATCTTGTGTCGGTCCTGAATAATTATGATCTCTGCCATATTATGACATAGCAGATGCTTAGAATT TTATTAACAACATAGAAGACCAGATTCTTTGTTGACTTGACTAATGACATAGTTGAACGAGGGTTATGGTGAATCTGAAA TTTGGTTTATAATAGGGTGGCTAATTCTCTTCCATGTAATGTTATGATTCATGAGATTGAATTAGCTGTCCAATTAAATA TATGAATGAAGTGGAGTTAAGGCTAAAAAATTCTGCTCATAGAATGCATCTTCGTTCGTGCTTCAAGTTAAATGCTTCAT TTGTTGTGTATGTCGAAAATAACACCTTTTGGTCAACATTACTTATTTCTCCAAATTTACTTTGTCCTTTAAAAAGTGGA TCTAACCAAATGATACATGAGCTTGTTTAATTTGATTTCATGGATTGCTTTTACATGATGAACTGATTTATCTATTTATT TACTTTTTCTTGTTTGGAACCTGATATTCTGAACTTGCTTTAATGCTGTCTTTTATTTCTTGTCTTTCCCCATCCATTCC ATATCTCCATATAATGTATTATATATAGGTGAGGGAATCGCATACTCTATTGGAGGCAATTTCACAGCACATGTGCTTAC AGTTAATTCTGGCGAGGTATTTCTTCGTTTCCTTTTAGGTCTATATCCTGAAGTTAATTAGATTATATACTTAATAGTTT TCTCCAACCATTGTGTATGAATGCCATATACAGCAGAAATGCAAATGCCATTCATATTGCTTTCACTTGATGCCATTTTC ATATAAATAAAATTTCGTGATGAAGCGAAATAAAACGAACTGAAAACTCTCTTATCTTCAAGATATAAGTAAGTTCACAA CATTTGTATGCTAACAGTAACATGTAATATTGTCTTTACAGGTCATCATCCAAAAAAAATCTTATTGCCTTTACACGCAC TAACAAAACACGTAATTTTCCATACAGTTAAATTATTTGTTTGCTTACTAATGATGTATGAGGGTATCCAATTAGATAAA ATTATTTAATTCTAGAGTCTAGAAATAATAGTTACATAATTTGCTGAACTATTTAAGGAATGCCTGGCTGTTTAAAAAAA ATGCTGTCCCAACACCCAAGGCTGTGAGCGTCGTTTATTGGTTCCATTGAATTTAAGAATAAGTGAAATAAGTTGAACTT TTAAATTTTAGTGAATTCAGAAGTACATCTATGTAATGTATAATTTATCCATAAATTATGAAAAGAAACATTAGCATATT AACTTTGGTATACTGATGAAGATGTACTGTTATTTACAATATGAAATATTGATGCACTGATGTGACATAGCCCTACTTGT ATTTTACTGTTGCATGGATCATATCTAGTGGTTGTGTTCAGTGACCTTATTGAAGTAACCTTTTGGTCTACATTGTTCTT CAATTTAATTACTGGTGTGCAGAGTGTTTGTTCGTATTTGTGAATTTTTTATGGCCTATCTCAGGATATTACTATGAAGA TTATGTCCTTCTCTCAACAAGGAGCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGT CAACCAAGTTCTTCTGGGGGTACTTTAACATATGAGGTGAGTTCAATCTTATGTCATCTGCATGAATAGAAAATGAGTTC ATTCATTTGTTTCTTTATGAGATAATATTTAATTATTTATATAACATGCAGTCAATTGGATAATCCATTATATAATCTTC TTTGTTTATACACAGCCTAGTCTATATTGTATATATGTATTAGTGTTTGGTATCAAATTCTCATTTTTTATTTTAATGTT CCCCAAGGGAAATCCTTATAAACATTATGGATAGAAAAGCATAGTGTTCATGTTTCCATTCTTTTTTCTTGTCTCAAACA CTTAGGAATTTGGACCTCATTTTTTGCTTCAACAACTAATGTCTCTTTATTAAAACTTTCCTTGCTTTTGGTTGGAATCA GAGATTTGAAACAGCGAATTCACTGACTTCCTCAACAAGATAACTCATCCTTCTTTGTCATCAACTCACTTAACTTCACA ATGAATTGATTTTACACATATGGTCCTTATCGTATAGATCAAATATATTCATTCTTACTAGTTACCAAAAAAAAAATTCA TTCACACTTGCTTGCTGCTTTTACAGGGAAGATTTGAGATTCTTTCCTTGTCTGGCTCCTTTATGCCAACCGATAATGGA ATTACAAAAAGTAGATCTGGTGGGATGAGCGTCTCTTTGGCGGGGCCAGATGGTCGAGTAATGGGTGGTGGGCTAGCTGG TCTGCTGATAGCAGCTGGTCCTGTGCAGGTAATCCTCATGCTATAGAAGAGGATGTTTGATTAAATAAAATCAAGAACCT TATGAAATTTCTAATCTATGGTGTTCTAACCTTTGTATAAGGAAACAATACAATATATGCACATTAGCACAAATGCTGGT TGTTCAAATAATAGTAGGCAAAATAGGGGTTATGACTTTAAGCGGGAAGGGGAGGTGTTAATTGTAAATATGCATATAAG TTCATATACATTTATATAAAATAGCATAAATAACAAAAAAAACCTTGTGCGATTAATTTTACGATTATGCCATGTTTAAG CCAGAAATCGATTACACATGCAATTTTCATTGCTCAGTGCACCATTAATAGCATAATCTCACCATTAATAGAAACACACT CACACACTCTCTTCATGTGGTTAATTTTTGCAAAAGTCAACAACATTTTTAATAAGTGAGGGGAAATACATTGACTATTT TGAAAATTGACCAATCATAAAGAGTGTGTGAGTGTGTTGGTAGAACTCCTGATGGTTCAAAATATTCCCATAACCATAAC ACGGGTTTTAATCTGTTAAGTTTGAAGATTAGATGACAAAACTCTTGGATAGACCATGTGTAATATTAATTCTATATGAA CTACCCCATGAAAATAAGAATAAAAGCTGAAAAACATTCGATAAAGAACCACATTACATGTATGAAATGAAGTGCTTTTC AGTAGGCGCTCTGCTCACTATCTTGTGCATCAGGTTGTTGTGGGGAGTTTTCTTCCTGGCCACCATCTGGAGCATAAAGC CAAGAAGCACAGGGTGGAGCATGTATCAACTATTCCCACCACTACACATGCTCCTCATATGTCTAATGAGGAAATAAAAG TAAGTTTTGGTGGATTTAAGCCTATCATGACACCTGCTGCATTTCAAGAAGAGAACAATGCTTCTTTTAACAACAATGCT CAACACTCTAGGAACTCATCTGCTGATGATAAAGATGATCCTTTACCTGAAAAGGAGTCTAAGATAAACCAATCAAATGC TTAGACAGCAGCATCATGCTGAACATGTTCCACTGTGAATTATTTGGTATTCTGCAGAGTCAACCTCATTTGGGCTCACT CACTGATGCTGACATTAACTTATCAACACAAACTCTTATGGTCAGATGAGTGTCACACAATGGTTTTGATTCAAAGTTCA CTATTTAGTGCTAGATGTTAGTTGGGAAATCTGGTTGTTAGGGTTTCTATGTGTCAGTTGATGTATCCCTGTAATGTTTA CTCATTGTTGTAGCAGTTAGATGTAGGATATATGTTTGTGCCACTTTTTTTCTCCCTTGATTACATTCTATATGGATATT GTAAGTGTGAGTGGATGTGAGTGCTTCTGATATGTAACTTAACAGTTTATAATTATTTGTTGTGAAAGAAGAAACTGCAT ATTAGTCTCTTAAGCTTAGTTTCTTGTTACTATGACTTTTTGCTATATGTTTATGGTCCTTTGTCAAAAGAAGGGGTGAG AAGATAGTTCAAGGACTAGTTTATTGAAGATTTTATGTGATGATTATTAAGTTGAAAAATGGTGTCTAGTTTGGGGATGC TATCAATGGTTATTGTTATGTTTTCATTGATGACCTTCACGTTGAAGTGTTTTCTATCTACTATGGTTTATATATTGCCG TTTCAACTCGTCCAATGCATTGGCTCTTTTGTAAACAATTTTCATGACGACAATTGCAAAGTTATTAGGAAGTCTTGAGA GACAAGTGAGCAAAATTAAATTAAGTAAACTACCTGCCTGAAAAAGTTAGGTGAATTACAACAATGTTGTTTAGTCTTGC CAATATGTTGAAGGTAAAAGACTTAGATAATGGAGGAAGATGAAATTACAAGTTGAGAAAA
CDS sequence (LotjaGi5g1v0194500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAAGAGAAAATTTTGGTGGTGGTGGTCATGGAGTGGTGCGTGATGAGGCTCCAGGGAGCTTCCACGTGGCTCC GAGGATTGAGAACAACTTGGATTTTTCCCGGGCTATGGTGCCGGCGGCGACGCCGGCGGTGACGGAGAAGAAGAAGAGGG GGAGGCCAAGGAAGTATGGACCTGATGGCAGGGCAATACCAGGTGCAGCAGCTGCAGCTGCAGCAACGCCTCTTTCTCCG ATGCCGATTTCGTCTTCGATTCCGTTGACCGGAGATTTCTCTGCCTGGAAGAGGGGTAGAGGGAGACCTGTTGAATCTAT TAAGAAGTCATTCAAGTTGGATTTTGAAAGTCCAGGTCCTCCAGCTGCACCAGGACCAGGTGAGGGAATCGCATACTCTA TTGGAGGCAATTTCACAGCACATGTGCTTACAGTTAATTCTGGCGAGGATATTACTATGAAGATTATGTCCTTCTCTCAA CAAGGAGCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAACCAAGTTCTTCTGG GGGTACTTTAACATATGAGGGAAGATTTGAGATTCTTTCCTTGTCTGGCTCCTTTATGCCAACCGATAATGGAATTACAA AAAGTAGATCTGGTGGGATGAGCGTCTCTTTGGCGGGGCCAGATGGTCGAGTAATGGGTGGTGGGCTAGCTGGTCTGCTG ATAGCAGCTGGTCCTGTGCAGGTTGTTGTGGGGAGTTTTCTTCCTGGCCACCATCTGGAGCATAAAGCCAAGAAGCACAG GGTGGAGCATGTATCAACTATTCCCACCACTACACATGCTCCTCATATGTCTAATGAGGAAATAAAAGTAAGTTTTGGTG GATTTAAGCCTATCATGACACCTGCTGCATTTCAAGAAGAGAACAATGCTTCTTTTAACAACAATGCTCAACACTCTAGG AACTCATCTGCTGATGATAAAGATGATCCTTTACCTGAAAAGGAGTCTAAGATAAACCAATCAAATGCTTAG
Protein sequence (LotjaGi5g1v0194500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEERENFGGGGHGVVRDEAPGSFHVAPRIENNLDFSRAMVPAATPAVTEKKKRGRPRKYGPDGRAIPGAAAAAAATPLSP MPISSSIPLTGDFSAWKRGRGRPVESIKKSFKLDFESPGPPAAPGPGEGIAYSIGGNFTAHVLTVNSGEDITMKIMSFSQ QGARAICILSATGTISNVTLRQPSSSGGTLTYEGRFEILSLSGSFMPTDNGITKSRSGGMSVSLAGPDGRVMGGGLAGLL IAAGPVQVVVGSFLPGHHLEHKAKKHRVEHVSTIPTTTHAPHMSNEEIKVSFGGFKPIMTPAAFQEENNASFNNNAQHSR NSSADDKDDPLPEKESKINQSNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 6.4E-138 | ||
| PANTHER | 1 | 340 | 340 | 6.4E-138 | – | |
| MobiDBLite | 44 | 64 | 21 | - | – | |
| SMART | 50 | 62 | 13 | 0.54 | ||
| SMART | 97 | 109 | 13 | 9.9 | ||
| ProSiteProfiles | 135 | 278 | 144 | 39.287 | ||
| SUPERFAMILY | 137 | 256 | 120 | 6.54E-33 | – | |
| Gene3D | 139 | 267 | 129 | 7.3E-11 | – | |
| Pfam | 140 | 253 | 114 | 3.6E-29 | ||
| CDD | 141 | 253 | 113 | 1.14183E-35 | ||
| MobiDBLite | 305 | 320 | 16 | - | – | |
| MobiDBLite | 305 | 343 | 39 | - | – | |
| MobiDBLite | 321 | 335 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi5g1v0194500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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