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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0219300 |
| Transcript ID | LotjaGi5g1v0219300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA ligase-like protein; TAIR: AT3G05210.1 nucleotide repair protein; Swiss-Prot: sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1; TrEMBL-Plants: tr|K7LJM3|K7LJM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52561004..52566302) extracted from Lotus japonicus Gifu genome v1.2.
GAATTGAAGGTGCAGAAGGAGATGGAGGAAGAAGAGCAAAACAACGATACGAACACGAAGAAGAAGAGTAGCTCCGTCGT GATAAGAATCCCTTCGTATCAAGAAGTGGTTGAAAGTTCTCAGGCGAGATCAACGCCACCGTCGCTGTTCGTTCCCTCCC AAACCTTCTCTCAAGCCTTCGCGTTCATCAAATCCTCCGAGTTCTACTCTGCTCCTACTCCTCCTCCTTCTTCTTCACTC CCAAGGTTCCATTGCTGCTTCTAATTTCAATTCAATTTACTTCAATCGTAGTCATTATTAATTAATTTTGATTTTGATTA GGGAAACCAGTCAACCAAACCCTCCATCTTCGTCTTCATCTTCAGCATCAACGACATCATCATCTGCTACTACTACTACT ACTCAGTCCGGTCAAACTCGCAATGCAATTCTTGTCAGCCACAGACAGGTGAGTGAGGGGAATTTTAAATTTGTGAAGGT TTTGATGATGATGATGATGTTATTGTTGTTTGATTTTGTGTTTTTCAGAAGGGAAACCCATTGCTCAAACATATTAGGAA TGTTAAATGGACATTTGCTGATGTTGTTTGTGATTACTTGCTTGGTCAAAGCTCATGTGCTATCTATATCAGGTTATTTG AATTTTCTGTTCTTTTTTTGTTGTTGGTTGAATTTGTTTGTTTTGCTGCTTGTAGTATTGTGGGTTTTTATTGTTGTTGC AATAGTTAATGTTAAGACTAATAAACACTTGAAAAGAGGAGTGCTGTTACTTGCTAGGTTCTTCTGATAGATAACTTGTC GAAACGAAATGCTTTTAATTATTTATGCGAGTTGCGTTAGTTAAATGTGCTTGGCAAAAATATATGACCACGTGAGTTTT CGTATCGAATTGCCTAAAAACTGTGGATTTTGTGGTGATTTCTCTGCCAGTATCACGGGATGGGGTATATATGTGTCGAA CAATTATTTGTAATCTGTCATAGTTCGGAAAAAAAAAATCATACCACGTGGGCACTACTAAGTGAATCAACTGTTTACAT CGGACATTCTTGTTTATTATCATGCTTACAGAACTTATTGTTTTCTAAATTGTCTCCTGTGTGTGATTAGTTGGATACCA ATTACCAAGAAGTTGTTATTTTTCCGCTAGATGGGTTTGTTATAGTTATATTTATGCATCAACTTGACTTAAGTGGATGG TTTGATGCAGTCTTCGGTATCATCTGCTGCATCCTGACTACTTGTATTATAGAATAAGGGAGTTGCAGAAGAATTTCAAG CTTCGTGTAGTTTTATGCCATGTTGATGTGGTCAGGCAATCTGTTATACTTATTCAAACCTCTGTAGCATCTACTTTAGT TTGTTTTCCAATGATATAATATAATTATAGCTATTGCTATTCTATTATTGACATGAAGTATGTGACATTTTCTTTGTTTT TTTACTATTGATTGCAGGAGGATGTAGTGAAGCCTCTACTTGAAGTTACAAAAACAGCTTTGCTTCATGACTGTACCCTT TTATGTGGATGGAGGTGCAATTGGCTCTCCTTTTAACTGTTTTTGAAGTGTGCATACTGAATATATCATTTCTTTATTCA CTCTTATGAGCCTGAGACTGAGAGTGCTGCTATCTACCATATTCTGATGAACTTTATAATAAATTCCAATTATAAAATAT CAAAATATCATATACAGCTACCAAAGCTTTCATTAAGGATGGGAGTTTGTCGTTGCAACTTGATGGATATGGTTAACATG ACTAGCTATTTCTTAGCGTTTTCCCCTTTTTTTTAGGTGACTCAGTTATAGAATATACATTGTGAGATGAGAACAACCTA TTATAGTTTCTTGGGGAACATTTAAATTAGCAAAATTTCTACCATTTAAAGGTGCTTGGGGCTACTGTAGCATGCATGTG AATTTGATAGTATCCTTAATGAGTTAGTAGTTTAGTTAGTTGAGTGTTTTAGTTAGTTTGAAAGAGTTAGTTAGAGTGAG AGAGAGAATGTTATAAATAGGAGAGTTAGAGAGAAATATCATCTCCGGGGATCATTTGTAATTGGGAACTTGGGAGAGAG CTGAACACTTGACCATTCAGGAGTTTTGGCCGATTTTCTTCAATAAACTGTTCTCCTTTCTTCTTTAGTGCTGGTACCTA TCATAATTTAAGTATCTGCAGCAGGATCTGGCAAGATTCCTCTTACCTGTGTAATTGATTTTCTTACTGTTCCATTCTGC CATTGTTTTAGCCTAGAGGAATGTGGCCGTTATTTGGAGACCATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCA AGGGCAAATGGATACAGACTATCTATCACGTGTATGCTTATGTTTTTTATTATCTTTTTTATATATACAATAACATTATC ATGGGTTTTAGTACTTTCAAAATCAAAAGATTAAATACACATTACACAGTCTAATGTTGATAAAGTTCTAAGCATGGTCA TCAAACGCACTGAAGCTAGTCTTACTTTTAACTGCAGCTGACACATGCCCTTACGACGGTTCGGCATGTTAACAAGACTG ATGTAGTCACCCTCGGTACCACATTTGGGGTATGTATTCTGTGTTTTAGCACACACATAGACACGTATATGTTGATTGAT TTTGTTTGCAAAAGCATTTACCAAGCTGGAACCTTGTCTTTTCAGTCTCTATCTCACATTATGGGTGCATCTATGGAAGA TCTTGCTCGCTGCCCTGGCATAGGAGAGCGCAAGGTATATTAACATTGGTAAAAGTGGGATAGGACAATGATTTATACTT TTTATGTTTGGGGGGGCTGTGGTTGCCTGATTTGGTACCAGAGCCCAAATGATTCGAACCAAAAAACTTATACTTCCTGA TAACAGGTCAAGCGCTTGTTTGACACTTTCCATGAACCCTTCAAGCGTGTGGAGTCCAGCCGGCAAGCCGTTCCAGAGAC TTCTGCCCAGAATAAGCCAGCTAGTCCTGATCCATTAATGAGAAACAATGCTGAATCTTCTTCCTTGATTAAAGACAAGG ACGTAGAAGATGTTAGCAAACGTAGGAAGGAAGAGCCTGAACTGACTGTCAAATCTGCCCTTTCTGCAGCATTTGCTAAA TATTCTGACAGAGTTGGAAAGAACACTTCCGAAGTAGAAGAGAAAGAAGAAGAATCATTAGTTGTCAAGGATTCAGAAGA TGAATCATAAAATTACCATTAAGTTTTACAAGATAGTTTAGTTTTTTTTTTTCTTGAGCGAGATAATCTAGCGAGATTTA GAAGCTTAATTTAAAATCTCCATGCATTACTGGCATGTTACTCTGCTAGGAGTGCAAATGTGTCATGAGGGAAACAGCTC AGCTGCTGAAGAGGTTGTAATATGACATCTGGACTGCTAGGAGAAGCTTTAACCGAATGAGAAGGCAAGGAAGAGAAGAG GGGTCATAGAGTATGGATAGGAATAGAGGGAATATAGGATTAAGCGTTCAGTTGTTGAGAATAGTTGGGAGGGAGGGTTT GGACTTTGGACTCGAAATTCCCAGATTGAGAGAGATTCTCATCTTACATTCTGTCTACCTCGTCTATTCATAGTTTTGGC CCTTTGTTACTCTGATTAAACAAATTCATTTATCTTGATTCGGAGGGATGTTTGCAATGATTTTTACCATGGAAATATCC ATTGACATGATCTGCAGGGATTCCTGTTGTACATCATGCTTTATGGGGAATCCCTCGCATTCAGCCAGTAATATAGTAAG TCCAAATATATCAGCATTACTCCCCTAAATTCGTCCCTATCTGTATGTTAGTATTTCTCTTTATAGAAAAAAGTGAAGTA GCTTTCAATATAGTTGTCCAATTGCACATTATGCGTTAATGCCCCTAAAGCCGAGCTCTTTGCCAATTGCCAGATAGAAG AAGCTGGACTCAATCAACCTCTTACTGGTAAGTGGAAGCTTCGTTACAGTTGGCTAAAAATGATTCTGTCTGATTTAAAG AATGTGCTGAGTTTGTTTTCATGCGGTGAGTTGGATTATTCAAGAATTTGACTGGAAATGAAACTCTCAAAATGTTTGAT CTTTATTTGATCATATTACAGAAGAAATCTAATTTTGTGAAAGTTCATGTTCTTCTCAATTTTGTACCATGTGTCTCAGT AAGCTTACCATAAAAAAGCTAATTTAAAAAAAGGGTGTTAATATTGCATATGGATATTAAAATGAAAAAAATAAAAAAAG AGCATCTAGAACTATGTGTCCCGTGACTCAATGCAAATGATTATAATTTTGGGCCCTAGACAAATTTGGATTGCTTCTGG CATTGATCTAAGTTGCCAACTTGATATTGCATTTTCCCCCATCCTATGTTTGTCCAAACACTGTTTCAGTCTAAGAAGGA AATGCAGTTATTTCTAGGCTGCATATTGCCTTTTCAAACAGAAACATGATGCACGCCTAAAGACTTGGTCTTGGTATTTG TTTATGAAACCTCAGGGAACTGGTTGAACTAAGAGAAGATGGGTTCCTGACAAGTGGTACCAATGATTGTACAACATCTG TCATGAGAGGCCTGTAATCAGCTTCTGGCTGTATGCACATTGCTGCAATGGCAGCTACCTATAAATCCCAAAACAAAGAG AAATCAAATGATTATGTAATGGGGAATATATAATTAATCCAAATCATCAAGTAATAATGATGAGAATAAGAGAAAAACAG TGACTCAAAGAAGCCATGTTACCTGAATTAATTCCTTATTTGAGTACTGTCCTCGTAGAGCTGGATCAACCATTTCAACC ACCTTATCTCTGCTTGTCAACCTTGGAAGAGCCTGATGATGAGTAACAAAGATGATATGTTACAAGACATGACAGTATCA AAAACTCAGTTCCCTGATTCATAATCAGAGACAGTGTTTGCTATACAACTTAGCAGTTAGCACCCTTATTGATATTCTGG AACATTAGCAATTTTTACTACTTTGATCTCAAACAAAAACTATTTTGTAAAACAATTGCAGAGTGCTATTCGGTGCAAGT TTGGAAATCCTTCTACAATTAATTATAAAGATATAATCAATTGTCGTGAGAAGCTTCTTTGAGTAACTCCTGAATTTCAT AATCGATTTATAGAAAAGAAAAGTTTATCAAAATATGCTATTACTAACCCATGAAACAAGGACATGTTCTCCAGGGGGCC GCTTAATGTCAACTGGTACACGTCCGGTTAGCAGTTCAAGAAGAACCACACCATAGCTGTAAACATCTGACTTTGTAGTA AGCTTACCCGTGGATGCGT
CDS sequence (LotjaGi5g1v0219300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAAGAGCAAAACAACGATACGAACACGAAGAAGAAGAGTAGCTCCGTCGTGATAAGAATCCCTTCGTATCA AGAAGTGGTTGAAAGTTCTCAGGCGAGATCAACGCCACCGTCGCTGTTCGTTCCCTCCCAAACCTTCTCTCAAGCCTTCG CGTTCATCAAATCCTCCGAGTTCTACTCTGCTCCTACTCCTCCTCCTTCTTCTTCACTCCCAAGGGAAACCAGTCAACCA AACCCTCCATCTTCGTCTTCATCTTCAGCATCAACGACATCATCATCTGCTACTACTACTACTACTCAGTCCGGTCAAAC TCGCAATGCAATTCTTGTCAGCCACAGACAGAAGGGAAACCCATTGCTCAAACATATTAGGAATGTTAAATGGACATTTG CTGATGTTGTTTGTGATTACTTGCTTGGTCAAAGCTCATGTGCTATCTATATCAGTCTTCGGTATCATCTGCTGCATCCT GACTACTTGTATTATAGAATAAGGGAGTTGCAGAAGAATTTCAAGCTTCGTGTAGTTTTATGCCATGTTGATGTGGAGGA TGTAGTGAAGCCTCTACTTGAAGTTACAAAAACAGCTTTGCTTCATGACTGTACCCTTTTATGTGGATGGAGCCTAGAGG AATGTGGCCGTTATTTGGAGACCATAAAAGTCTATGAAAACAAGCCTGCAGACATTATTCAAGGGCAAATGGATACAGAC TATCTATCACGTCTGACACATGCCCTTACGACGGTTCGGCATGTTAACAAGACTGATGTAGTCACCCTCGGTACCACATT TGGGTCTCTATCTCACATTATGGGTGCATCTATGGAAGATCTTGCTCGCTGCCCTGGCATAGGAGAGCGCAAGGTCAAGC GCTTGTTTGACACTTTCCATGAACCCTTCAAGCGTGTGGAGTCCAGCCGGCAAGCCGTTCCAGAGACTTCTGCCCAGAAT AAGCCAGCTAGTCCTGATCCATTAATGAGAAACAATGCTGAATCTTCTTCCTTGATTAAAGACAAGGACGTAGAAGATGT TAGCAAACGTAGGAAGGAAGAGCCTGAACTGACTGTCAAATCTGCCCTTTCTGCAGCATTTGCTAAATATTCTGACAGAG TTGGAAAGAACACTTCCGAAGTAGAAGAGAAAGAAGAAGAATCATTAGTTGTCAAGGATTCAGAAGATGAATCATAA
Protein sequence (LotjaGi5g1v0219300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEEQNNDTNTKKKSSSVVIRIPSYQEVVESSQARSTPPSLFVPSQTFSQAFAFIKSSEFYSAPTPPPSSSLPRETSQP NPPSSSSSSASTTSSSATTTTTQSGQTRNAILVSHRQKGNPLLKHIRNVKWTFADVVCDYLLGQSSCAIYISLRYHLLHP DYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTD YLSRLTHALTTVRHVNKTDVVTLGTTFGSLSHIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAVPETSAQN KPASPDPLMRNNAESSSLIKDKDVEDVSKRRKEEPELTVKSALSAAFAKYSDRVGKNTSEVEEKEEESLVVKDSEDES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 19 | 313 | 295 | 1.7E-125 | ||
| MobiDBLite | 63 | 108 | 46 | - | – | |
| MobiDBLite | 77 | 108 | 32 | - | – | |
| TIGRFAM | 109 | 220 | 112 | 1.5E-41 | ||
| Gene3D | 109 | 223 | 115 | 4.9E-45 | – | |
| SUPERFAMILY | 109 | 235 | 127 | 1.5E-48 | ||
| Pfam | 111 | 223 | 113 | 8.9E-43 | ||
| Gene3D | 224 | 314 | 91 | 4.8E-34 | – | |
| SUPERFAMILY | 232 | 303 | 72 | 9.21E-17 | ||
| MobiDBLite | 306 | 358 | 53 | - | – | |
| MobiDBLite | 310 | 335 | 26 | - | – | |
| MobiDBLite | 336 | 358 | 23 | - | – | |
| MobiDBLite | 372 | 398 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Damaged DNA binding | Interacting selectively and non-covalently with damaged DNA. | ||
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi5g1v0219300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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