Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0003684

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description Damaged DNA binding
Full defintion Interacting selectively and non-covalently with damaged DNA.
Subterm of

Relationships

The relationship of GO:0003684 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0003684, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl

Associated Lotus transcripts 40

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0134359.1
– PREDICTED: N-glycosylase/DNA lyase OGG1-like isoform X1 [Cicer arietinum] gi|502135915|ref|XP_004502497.1|
GO terms
3
Lj0g3v0181229.1
– N-glycosylase/DNA lyase [Medicago truncatula] gi|357463557|ref|XP_003602060.1|
GO terms
3
Lj0g3v0359589.1
– PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1|
GO terms
4
Lj1g3v0049850.1
– PREDICTED: DNA repair protein REV1-like isoform X2 [Cicer arietinum] gi|502158837|ref|XP_004511297.1|
GO terms
4
Lj1g3v3328650.1
– RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1|
GO terms
3
Lj2g3v1155470.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
3
Lj2g3v2256250.1
– DAMAGED DNA-BINDING protein [Medicago truncatula] gi|357490691|ref|XP_003615633.1|
GO terms
4
Lj2g3v2256250.2
– DAMAGED DNA-BINDING protein [Medicago truncatula] gi|357490691|ref|XP_003615633.1|
GO terms
4
Lj2g3v2558970.1
– DNA repair protein complementing XP-C cells-like protein [Medicago truncatula] gi|357492015|ref|XP_003616296.1|
GO terms
3
Lj3g3v0044230.1
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502080701|ref|XP_004486650.1|
GO terms
6
Lj3g3v0044230.2
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502080698|ref|XP_004486649.1|
GO terms
6
Lj3g3v0290230.1
– PREDICTED: DNA repair protein RadA homolog [Cicer arietinum] gi|502081182|ref|XP_004486791.1|
GO terms
3
Lj3g3v0707070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
3
Lj3g3v2318330.3
– DNA repair protein radA-like protein [Medicago truncatula] gi|357513543|ref|XP_003627060.1|
GO terms
3
Lj3g3v2735120.1
– PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like isoform X1 [Cicer arietinum] gi|502146520|ref|XP_004506489.1|
GO terms
8
Lj4g3v0451050.2
– PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1|
GO terms
2
Lj4g3v0451050.3
– PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] gi|502141797|ref|XP_004504643.1|
GO terms
2
Lj5g3v2215070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
3
Lj5g3v2302940.1
– PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Glycine max] gi|356576925|ref|XP_003556580.1|
GO terms
7
LotjaGi1g1v0121000.1
– Protein DAMAGED DNA-BINDING 2; TAIR: AT5G58760.1 damaged DNA binding 2; Swiss-Prot: sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2; TrEMBL-Plants: tr|I1MBA5|I1MBA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0121000
GO terms
4
LotjaGi1g1v0263300.1
– N-glycosylase/DNA lyase; TAIR: AT1G21710.1 8-oxoguanine-DNA glycosylase 1; Swiss-Prot: sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1; TrEMBL-Plants: tr|A0A0S3RDM0|A0A0S3RDM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263300
GO terms
3
LotjaGi1g1v0550600.1
– RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600
GO terms
3
LotjaGi2g1v0277900.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900
GO terms
3
LotjaGi2g1v0459700.1
– DNA polymerase IV; TAIR: AT1G49980.1 DNA/RNA polymerases superfamily protein; Swiss-Prot: sp|P34409|POLK_CAEEL DNA polymerase kappa; TrEMBL-Plants: tr|I1LFP9|I1LFP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459700
GO terms
2
LotjaGi2g1v0461300.1
– DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300
GO terms
4
LotjaGi2g1v0461300.2
– DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300
GO terms
4
LotjaGi2g1v0461300.3
– DNA polymerase IV; TAIR: AT5G44750.1 DNA-directed DNA polymerase; Swiss-Prot: sp|A3EWL3|REV1_ARATH DNA repair protein REV1; TrEMBL-Plants: tr|A0A0R0LQ66|A0A0R0LQ66_SOYBN DNA repair protein REV1; Found in the gene: LotjaGi2g1v0461300
GO terms
4
LotjaGi3g1v0002300.1
– Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300
GO terms
3
LotjaGi3g1v0007500.1
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
6
LotjaGi3g1v0007500.2
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7II90|G7II90_MEDTR Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
6
LotjaGi3g1v0007500.3
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.1 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
6
LotjaGi3g1v0022200.1
– DNA repair protein RadA like; TAIR: AT5G50340.1 DNA repair protein RadA-like protein; Swiss-Prot: sp|P37572|RADA_BACSU DNA repair protein RadA; TrEMBL-Plants: tr|G7IHX8|G7IHX8_MEDTR DNA repair-like proteinRadA; Found in the gene: LotjaGi3g1v0022200
GO terms
3
LotjaGi3g1v0372600.1
– DNA repair protein RadA like; TAIR: AT5G50340.1 DNA repair protein RadA-like protein; Swiss-Prot: sp|Q92F42|RADA_LISIN DNA repair protein RadA; TrEMBL-Plants: tr|G7LGQ6|G7LGQ6_MEDTR DNA repair-like proteinRadA; Found in the gene: LotjaGi3g1v0372600
GO terms
3
LotjaGi3g1v0433200.1
– ATP-dependent DNA helicase 2 subunit KU80; TAIR: AT1G48050.1 Ku80 family protein; Swiss-Prot: sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80; TrEMBL-Plants: tr|G7JDE1|G7JDE1_MEDTR ATP-dependent DNA helicase 2 subunit KU80; Found in the gene: LotjaGi3g1v0433200
GO terms
8
LotjaGi3g1v0433200.2
– ATP-dependent DNA helicase 2 subunit KU80; TAIR: AT1G48050.1 Ku80 family protein; Swiss-Prot: sp|Q9FQ09|KU80_ARATH ATP-dependent DNA helicase 2 subunit KU80; TrEMBL-Plants: tr|G7JDE1|G7JDE1_MEDTR ATP-dependent DNA helicase 2 subunit KU80; Found in the gene: LotjaGi3g1v0433200
GO terms
8
LotjaGi4g1v0055000.1
– DNA polymerase IV; TAIR: AT5G44740.2 Y-family DNA polymerase H; Swiss-Prot: sp|Q8H2D5|POLH_ARATH DNA polymerase eta; TrEMBL-Plants: tr|I1KRK8|I1KRK8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055000
GO terms
2
LotjaGi5g1v0219300.1
– DNA ligase-like protein; TAIR: AT3G05210.1 nucleotide repair protein; Swiss-Prot: sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1; TrEMBL-Plants: tr|K7LJM3|K7LJM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219300
GO terms
4
LotjaGi5g1v0219300.2
– DNA ligase-like protein; TAIR: AT3G05210.1 nucleotide repair protein; Swiss-Prot: sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1; TrEMBL-Plants: tr|K7LJM3|K7LJM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0219300
GO terms
4
LotjaGi5g1v0340800.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800
GO terms
3
LotjaGi5g1v0365500.1
– ATP-dependent DNA helicase 2 subunit Ku70; TAIR: AT1G16970.1 ATP-dependent DNA helicase 2 subunit Ku70-like protein; Swiss-Prot: sp|Q9FQ08|KU70_ARATH ATP-dependent DNA helicase 2 subunit KU70; TrEMBL-Plants: tr|K7N5J8|K7N5J8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0365500
GO terms
7

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0043564
Cellular component Ku70:Ku80 complex 1 2.50