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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0228400 |
| Transcript ID | LotjaGi5g1v0228400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a; TrEMBL-Plants: tr|G7I9F7|G7I9F7_MEDTR Importin subunit alpha; Found in the gene: LotjaGi5g1v0228400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53554868..53559042) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTACCGCCCTACCGGCAACTCCAGGACCGAGGTCCGTCGCAGTCGGTACAAGGTTGCGGTGGACGCTGAAGAAGG TCGCAGACGCCGTGAGGACACCATGGTCGAGATCCGCAAGAATCGCAGGGAGGAGAGCTTGTTGAAGAAGAGACGCGAGG GTCTCCAGCCTCAGCAGCAAGTTCCTTCCGCCGCTCACTCCACTGTCGTCGAGAAGAAGGTCGGTTTTTTCATCATTCAA TTGTTTTTGATTTGATTTGATTTGATTACTTCTTCACAAACACGAATTAAGCTTGAGATTTCGTCATTTCTGATTGTTGA ATTGATGATGATGATGATGATTGATGATAATGATGTGAAGTTGGGTTTCTGTGTTGTTGTTGTTGCAGTTGGAACACCTC CCAGCCATGGTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTC GATTGGTTCGTGATTGATCTCTGTACCTAATTTATTATGTAGTGAATTTTAATTGACCTTTGGTTAACTTGTTTTTGTTT GTGTGTGTGTGACAGAACGTACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTG ATGAGGGAAGACTTTCCGCAATTGCAGGTACGTCGTGAATAATGCATTGTTTTGTTGATGGTTGAGTAATTACTATGTTA CTTATGCTGATTTGTTGACTTGGCATGTCTGTTGTCGTTTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTC GGGAACATCGGAAAACACCAAGGTGGTGATTGATCATGGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTG ATGACGTCCGTGAACAGGTATATTTTATATATCTTAACATATCATCACTTACCTATAAAATGCAGACACGTTAGGAAACT GAGATTCCTTTTTTAATATCGAGGATTTGGGGTACAACCTTTTCTTTCTGGCGTTAATGAAATTAAAACGATAACTCTTG GGCTATGAAACTTGTTTGTTCATGTTGATTTTTACATTTGGGTATACTTCTGTAGTTGCAGTGTAGTTATGAGCATGCAA AAGAAGAGGGGTCGGTGGGTGATCTATTTGCTTGTGCTGAGTGGTTTTATTTAAAATATGTAGCTGCCATCAAAAGAAAG ATAACAATACGTCAATGCCTTTGTCGCATTGTACCAGGGTATCTTTTATCAACAGCCTAACATTTCTCACTGTGTTTTGG ATACTAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGG CTTTGATTCCTCTGTTGGCACAATTGAATGAACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAAC TTCTGCAGGGGCAAGCCACAGCCTCCATTTGATCAGGTATGAAAATGTGCATTGCTCAATCTCTCTGAATAACTAAATCA TGGCGTTATTTTTTTAAGCCCTTGTTTTTCTTTATCATGATGCACTTCTGTCAAAGTTGAAATGGTACTTTCATGTTGTC AGATCCATATGAAATAGAAAGGGAGATTACATTACTTGGTTCTATTCTTTTGAATTATTTGTTGAATCAAGAGTACGTGT GTTTACCCTGTAGTTTAGAATGTCATGTTCTTGCTATCTTGCATGATATGGAATATCTAAGTACAGTTGACCTTGTGATC TGATGAACAACATTATTCATCATCTTCTTCTTTTGATGCATTTTTATTATGAATATGCGAAGTTTGTAGCCTTTTCAATC TAATTGTTCATGGTTATTCTTCTATGTGAAGTATTGAGCAAGTAACAGCCACCCTTGTAACTTGTAACATGAAAAAGGAA CCTGGAGGGTTGTCCATTGGCTAATTCGTTGGTTTTTCCTGTATCTATTTTCCTGATTGTGTCATGCTAGCTGCTATTAT GCTCTACTTTACACATCATACATTTTTCTTTTTTTAATAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATT CAAACGATGAAGAGGTATTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCT GTCATTGAAGCTGGTGTGTGCCCCCGGCTTGTTGAGCTGCTACTGTGAGTACTTGACATCTCATATATGATATATGGCTG TGCAATAATGAATGGGCCCCAGTGGCATTTTTCTGTCAAACTAAGTGTTCTTCTCTTGTTCAGGCACCCATCTCCTTCAG TGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTATTAAGTTGTGGAATG TGTCATGGTTGCTTTGTTATATACAGCACTTTTCTTTTCAGTTGTGGAGTCATATGCTCATTGAATGCCCTTATTTGTAA CCTTTTTTATGTTTATTATCTTTTATTTTGCCATTTGGTGTGTGTTGTAGCTGTTGGGTAAAGTTACGTGAATTGTGAGT TGTTTTATATTGTACTGCTAACATGCCCCCTCACACGAGAGCCCATTGGGTTTGAAGTGTGACAATGTATAGGCTCACCC ACCTTGTGCTTCTTCAATTCAACTTTGTGTTAAAACAAATTGAGGGCAATATCGATCGAACTCTATAGTCTAGAAGCTCT GACACACGAATAGTTTTATGTTAATACTTCTAATTATATGTCAATAGTTTTTTTTATATTACAAGTGTTTTGCTGGTTTA TAATTCACTGGCCCCCCTCTGATTCATATCATAGAAATATTCTTGCCTAAGTCATGCCAAATCTTTCTACGGACTGGATT GGAGCTGTATGGATAAAGGATTTTCTCTGGAATGTGATTTAATCAGCTTTGTAATTTTTTATTCTTATATTTAGTACCCT TTTTCAAGTGCTAACTGCTACAGTCAGTAAGTTCCTTCTGAGACTACCTAATCATGTCTATATTTTGGAAATGATATTTG TCAGCGTTGAAACTTGCTTTGCATAATTTATGTTTTTGGTTTGTTTGTTTAACCTAGTGCATTCCCTTGTAGGTTATAAT TAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATTAAAAAGGAAGCTTGTTGGA CCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGGTATAGTTGTTCACTTTATGATAGTTAGACTTAGAATGA TGTTTCTCTCTTTAAGTTATGATTGCACTATTGTTTTCTTATTTTCTTAAATTCCTGTTAATCAACAGTCTGTGGTTGAG GCCAATATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAGAGGCTGCGTGGGCTATCTC AAATGCTACATCTGGTGGCGCTCATGAACAAATCAAGTATGGGGAGACACGTTTTCAATATTCATGAGGAGGTTATTATG GTGTTATAATGTACTTTTTCTTGCGAGTTATGGACTGTTTTCCCTTGTTGACAGGTACCTAGTGAGTCAAGGGTGTATCA AGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTCACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAG GTAGGAGAAGCTGATAAAAATACAGGCAATTCTGGGGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTT GGAGAAAATTGAGAACCTTCAGAGTCATGACAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACGTACTGGT TGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTGCTGCTCAATCAGGGTTCAACTTTGGGGGCACTGAGGTTCCT TCTGTGCCTTCCGGTGGATTCAACTTCAATTAGAAGATATTTATTCTTATACAGGGGCAACATCTCATATTTGGCCTTTT CTGGATTGTCTGCGAATTTCCGAACGAAATTAGTCAATTACGTTTTGACAATTGCCATGTTTATGTTTTCTTCAATTGTT CAAACACTATTGGGAACTTTGTCAACTGCAGGAGTTTTGGCTGGTCTACCAGTAAAGTCCTCCAGTTTTATGGGACTACA GTTGAGGGGTTAGGT
CDS sequence (LotjaGi5g1v0228400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTACCGCCCTACCGGCAACTCCAGGACCGAGGTCCGTCGCAGTCGGTACAAGGTTGCGGTGGACGCTGAAGAAGG TCGCAGACGCCGTGAGGACACCATGGTCGAGATCCGCAAGAATCGCAGGGAGGAGAGCTTGTTGAAGAAGAGACGCGAGG GTCTCCAGCCTCAGCAGCAAGTTCCTTCCGCCGCTCACTCCACTGTCGTCGAGAAGAAGTTGGAACACCTCCCAGCCATG GTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTCGATTGAACG TACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGC AATTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCGGGAACATCGGAAAACACCAAGGTGGTGATTGATCAT GGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTGATGACGTCCGTGAACAGGCAGTGTGGGCATTAGGAAA TGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGGCTTTGATTCCTCTGTTGGCACAATTGAATG AACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTT GATCAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATTCAAACGATGAAGAGGTATTGACTGATGCCTGTTG GGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTCATTGAAGCTGGTGTGTGCCCCCGGCTTGTTG AGCTGCTACTGCACCCATCTCCTTCAGTGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATG CAAACTCAGGTTATAATTAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATTAA AAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGTTAAGTTATGATTGCACTATTG TTTTCTTATTTTCTTAA
Protein sequence (LotjaGi5g1v0228400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYRPTGNSRTEVRRSRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQQVPSAAHSTVVEKKLEHLPAM VAGVWSDDNSMQLESTTQFRKLLSIERTPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDH GAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF DQVKPALPALTSLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDM QTQVIINHQALPCLLNLLASNYKKSIKKEACWTISNITAGNKQQIQLSYDCTIVFLFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 60 | 60 | 15.192 | ||
| PANTHER | 8 | 374 | 367 | 4.9E-206 | – | |
| PANTHER | 8 | 374 | 367 | 4.9E-206 | – | |
| Gene3D | 13 | 52 | 40 | 8.4E-6 | ||
| Pfam | 14 | 97 | 84 | 3.5E-23 | ||
| SUPERFAMILY | 15 | 371 | 357 | 6.99E-94 | ||
| Gene3D | 75 | 376 | 302 | 7.1E-154 | ||
| SMART | 107 | 148 | 42 | 1.1E-7 | ||
| Pfam | 109 | 148 | 40 | 1.5E-9 | ||
| ProSiteProfiles | 118 | 161 | 44 | 10.132 | ||
| SMART | 150 | 190 | 41 | 2.1E-11 | ||
| Pfam | 150 | 189 | 40 | 1.8E-13 | ||
| ProSiteProfiles | 161 | 203 | 43 | 11.427 | ||
| SMART | 191 | 233 | 43 | 0.31 | ||
| Pfam | 192 | 233 | 42 | 2.8E-8 | ||
| SMART | 235 | 274 | 40 | 0.0093 | ||
| ProSiteProfiles | 245 | 287 | 43 | 10.027 | ||
| Pfam | 246 | 274 | 29 | 1.7E-7 | ||
| SMART | 276 | 316 | 41 | 8.0E-7 | ||
| Pfam | 277 | 315 | 39 | 1.5E-9 | ||
| SMART | 318 | 359 | 42 | 2.0E-8 | ||
| Pfam | 319 | 359 | 41 | 1.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi5g1v0228400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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