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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242600 |
| Transcript ID | LotjaGi5g1v0242600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|G7ICV1|G7ICV1_MEDTR Pre-mRNA splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi5g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55116230..55122776) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACAAAAAACGACAACAGAAACGTGCACTGAACAGATATTCATGTCGATTCGACCCAAAAAGAAAAACACGTCCCTC CCTCCTTCAATAAAATTGCACCGCAAGTTAACCCTAGCCTTCACCTCTGAGTTTCTAGGGGCTTCGAAGAGGATTGAGAT TAGGGTTTTGATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGTTTGATGTGGTGGACGACTCCGCCGTCAAGATGGCCA AAACCAACGGCGCCACCAGCCTCATAAACCACTGGACCGGGAAACCTTACTCCCAGCGGTACTACGACATTCTCGAGAAA CGGAAAACCCTCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGACTCTCATTCTCGTTGG TGAAACTGGTAGTGGTAAAACCACACAGGTCAGTTTCTCTACTCCAAAACCCTCTCTCAAAATTGAAATTGTAGGGACTC GATGAATTCTACTTGTTTTTGTGTGTAGGTCACTGAATTTTATGGTTTTGTGTTTTTGTTATTGGTGACAGATTCCTCAG TTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCACTCAGCCGCGTAGAGT GGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTTGGTTATAGCATCAGAT TTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATGTTTTGTTTTTCTGTTAAATTACTACTTTCTTTAGTTAATTG AATTTAGAGTTTCGTGCAGTATTTTGGCCCCGTTTGGAAGAGCTTATTTGAACTTATCTGATAGCTTAAGCTCTTATGTA AGTGTATGGCAGAGCTTATGCAAACAGGCGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAAGATAGCTTATG AAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAAATTTTAAAATAGCTTATGAATAAGCACTT ATGACCATAAGTGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTTTATATAATGTTTTCCCCCCCTATGGGTCTCAATTG GGATGCGTTTTCTTTGCTCCCTGCCACAGGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAATGGCGGATCCGCTTTT GGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTGTTTGGTCTTCTTAAGG AAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTT TCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGGAGCCAGAAAGAGATTA CTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTTGTTTTCCTTACTGGGG AGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGTGGGACCTTTGAAAGTG GTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTCCAGTTAAAGAGGGAGG GCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGTATAGTCTATGTTATTG ACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCT AGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACACTGAAAGAAGTTTCAA TAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTTACCTTAAAGAAACTTG GTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGCTTTGGAAGTATTGAAT TACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCATTGGATCCTCAGAT GTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCCATGCTATCAGGTATGA TTCTATTTTTAATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAATGTTAAGGGAATGTTGTTGTGTTGGGCTCCAC TTTGATATGGATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTGCATACGAGGGGATGTTTGACTGCTTACATGTG TGCTAAGTTGCACATGAATGCGGTTCATTGAGTATGTCCTGTTAGTTAGTCATCAGCAACTGTCTTCTCTGGGTTTCATG CCCCCGGTTGGCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCAGTATTCTCTCATGAAG AAATTGGTGTCGTCTCGCCTCTATGCATCTGCTGACCTTCCGTGGACCTCCTCTGTGATAAATAATTTCTTTCTCTAGTA CCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGGGCACATTGATGGAGA TCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAGTGAGTGCTCATTTCTGCTACTTTGTTTATTCCCCA ATTTGTTGCTATTTATTTTTGTCTAATGTCAAGTTCGTTAATTGTACGTGAATGGTTTTTCAGATGAGGATCCATCTTGG TGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGTGCGTATCATGACTCG GTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGGCAATGCTAGCAGGAT ATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTTTGTTGAGATGCACTG CAATTTGTGCTTATCTTCCTTCCTTTTCCATTTTGTACTACAAAAATAGCTATTGTGTAGGCTGAAGGATTGCATTTATA TTAATTATTATATTCTGGTGTAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCCGAGTGGGTAATCTAT AATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGTAAGATTTTATTCATTT AGTATTTTGATGGCTTTCCAAGCAAGGTTTGAGTTTGACAACTTGAGCTGGTAAAAAGTAAATATTTTTCATCCATGATA TTTGATGGGAAACTTGTATTCAGTAAAAGTGCTATCAGTAAATATATAGTTTTCTGGCATAAATTTTGATGCAGGAGCAA ATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCTGTTTTTAATTAAGTT TAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGTTAGGATTTTCATTAT TTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAGTTTATTATTGATAAT CAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTTGCTAACCCTTACTTT CTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGCATCAAGTGGCATCA GAGCAGGCTTTCTCCTGTCTCTTTTCTTTGCTTGATCAACCATGGAAGATCAACCAATGACCAAAGCAGATCTGAAGGAT GTTACCGCGGCTCTTACCGCGGCCCTAACTGCTATTACGCAACATATGACACAACAAATGATACAACATATGGCGACGTT CACGGCGGCTTTAACGGCGCAGATCAACAATACCAACAACGGTAACCGGCGACGAGACAGGAGAGGGAAACCACATAGGT TTCCGCGCGACAACAACAACAATCGTTCCGCTATATCTTTACCTTCCCAATCTTTGCATTCACCATCCGTATCTCATTCT TATTACCAAGTTCAGTACCCAACCTCTAAAACCACCGAAACTCCACACCCCCAACCTGCTACATCCAACCTTATCAATCC TTACCCCAACATATCACCGACTGCAAATCCAATTTCCTTGCCACAACCCTTACCAAAACCTATTTCAAATTCATGTCCAT CTGCAAGACCTATGTACGCAACTTCTTCGGAATCAGATTCTCAAATTTCATTTGCGCCATCCTCTATTGTTGACATGGAA GATGAGGCAAAAATGTTGGTGGATGATTTGGTACCATCTGCGCAGAAACCAAGGGAAGTAGACGTTACAAAAGATGAAAA CTTTGGCCACATGAAGTCCTCAGAGTTTCTTACATTCAAATCTTCAACTCCGCTTCCTACAGGAGTACAAAGCATTATCC CCTATAATTCAAAAGCCCCCAATGTTATTTTGGAGAAACTGGAGAGGTTAGAATTGCTTAAAGATAGTGATGGTGCTCAT GAGATATTTGTTGAAGGAGATGATGAAAAAATAGTTCGAAGTTGTAGTAATGGTGTTGTTCGTTTGGTTGGTTTGCATAT TGAAGCCTTTTATTTAGAAGAGAACTTGTGGTCAAGTTCTTTGGAAGAAGAGGAGAATGTAAAGACATCAGAGGCACTTG GTTGTGACGCATTCATGCGGACATCAGATAGTTCTACACAAATTTGGGTATTTGACCCTGGCATTCTTAATGTCGTTCAT GAGTTCCGAACAGAGGCCTCCTTTGTTTTTTTTTGTTACGTTAGAACTCGGGGTCGAGTTCTTCACAAGAAGAGGAGCCT GATGCAGGAGCAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCTGT TTTTAATTAAGTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGTTA GGATTTTCATTATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAGTT TATTATTGATAATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTTGC TAACCCTTACTTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTGCA TCAAATTTACTAAAACATATTGTATATTCCTATCATGAATTAATAACACTTGAATAGATGATTTATGTACAGTGGTAAAC ACAACTTATTATTTTGAATTCCACTCTTTGATTTTAGCTGGGAGAGAGTTGCAAGAATGATTCTCAAGTATAATGTTGTG GACCTTTCTGTACTAATTTTGGCTGATGTTATTTAGATGTATTAACTTTATGATGTATTATTATCCTGCAGGATAGTTGA TATAGCACCACATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAAGGCGTGTTCTTGAGAAGCTTTACAAGAAGC GAGAGAAGGAAAAAGAGGAATCTAGGGGTCGTAAATGAAGTCCTACCCATCCAAGCCTTTTTTCCCTCTTGGATTGGGAT TGGATGTCTCGTCTCTTCCAATTTGACATGATAATTTATTCATGGAAAAGATCCCCAATACTTACTTTGAACGACATGCT GGTTGTCAGTAGTTTCTTTGAAAAATTGGCCAGTTCCCTGTACTATTTACTAGAGTAGTGGGAACCTTGTTTTATATTCT TGAACGTTCTGTTGTACCTTAAGGATTATTGCCTGCTCAAATTCGTTTGTTGGATGTTAGTTTCGTTGAAGGTTAGATCC TACTATTGCTTTATCCTACTGATAGTTAACACTCAAAATGAAGTAGAGCGGGATATAGTAATTTGCATGAAGGAATAGAT CAAATGTTGATGTTTTAGCCAAATATTGAGGCTTGTCATATCTGGCCCATTTTGTTCTGTTTGCTAGTAACCATACAAAT TTTACTTGCCTTGTGCATCCAATTGGATGGTATTTGCTAGCAAGTTGATATTTTTAATGAATTGTTGTCATCTCTATATA CTAAAAGTTCTAACTTCTAATGCTTTTCCTCTTTAGCTTATGTTTTAAATTCAATGTGATTTGTTTAATGAACATAGCAT TGTTGTGGTACCATAAGAAAATGACTACCTCCTATTCCTGAAAGTATGAGTTTACTATGCTAGCTGTTGTGATAAGAAAC ACAAGCAGTTATTCTTCACTACGCGTAATTTTGGTCGAACAATACAAATAACTTTGTCACATCATCA
CDS sequence (LotjaGi5g1v0242600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATTCGACCCAAAAAGAAAAACACGTCCCTCCCTCCTTCAATAAAATTGCACCGCAAGTTAACCCTAGCCTTCAC CTCTGAGTTTCTAGGGGCTTCGAAGAGGATTGAGATTAGGGTTTTGATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGT TTGATGTGGTGGACGACTCCGCCGTCAAGATGGCCAAAACCAACGGCGCCACCAGCCTCATAAACCACTGGACCGGGAAA CCTTACTCCCAGCGGTACTACGACATTCTCGAGAAACGGAAAACCCTCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAA GGCTTTGCGCGAAAACCAGACTCTCATTCTCGTTGGTGAAACTGGTAGTGGTAAAACCACACAGATTCCTCAGTTTGTTC TGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCG ATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTTGGTTATAGCATCAGATTTGAGGA TTGCAGTAGTTCCAAGACGGTTTTGAAGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGG ACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAA GTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTC CGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGGAGCCAGAAAGAGATTACT TGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTTGTTTTCCTTACTGGGGAG GAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGT ACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGC CTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGTATAGTCTATGTTATTGAC CCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAG TGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACACTGAAAGAAGTTTCAATA ATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTTACCTTAAAGAAACTTGGT ATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGCTTTGGAAGTATTGAATTA CTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCATTGGATCCTCAGATGT CAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCCATGCTATCAGTACCCAAT TGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGGGCACATTGATGGAGATCATCT CACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAATGAGGATCCATCTTGGTGCTATGATAACTTTGTTAACAATA GGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGTGCGTATCATGACTCGGTATAACCTGAAGCTATGCAGCAGT GACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGGCAATGCTAGCAGGATATTTCATGCAGGTGGCCCATCTTGA GCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCCG AGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGATA GTTGATATAGCACCACATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAAGGCGTGTTCTTGAGAAGCTTTACAA GAAGCGAGAGAAGGAAAAAGAGGAATCTAGGGGTCGTAAATGA
Protein sequence (LotjaGi5g1v0242600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIRPKKKNTSLPPSIKLHRKLTLAFTSEFLGASKRIEIRVLMGTERKRKVSLFDVVDDSAVKMAKTNGATSLINHWTGK PYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETGSGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAA MSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMADPLLDRYKVIILDEAHERTLATDVLFGLLKE VLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGE EEIEDACRKINKEVSNLGDQVGPLKVVPLYSTLPPAMQQKIFEAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVID PGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLG IDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPN CFIRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNNRALKSADNVRQQLVRIMTRYNLKLCSS DFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWI VDIAPHYYDLSNFPQCEARRVLEKLYKKREKEKEESRGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 43 | 760 | 718 | 0.0 | – | |
| PANTHER | 43 | 760 | 718 | 0.0 | – | |
| Gene3D | 49 | 277 | 229 | 3.1E-88 | – | |
| CDD | 84 | 274 | 191 | 1.933E-124 | – | |
| SUPERFAMILY | 93 | 649 | 557 | 1.89E-134 | ||
| SMART | 94 | 284 | 191 | 4.2E-33 | ||
| ProSiteProfiles | 106 | 275 | 170 | 22.015 | ||
| SMART | 111 | 284 | 174 | 0.0031 | ||
| Pfam | 112 | 256 | 145 | 1.3E-7 | ||
| Gene3D | 278 | 459 | 182 | 5.5E-73 | – | |
| CDD | 279 | 447 | 169 | 2.28939E-85 | – | |
| ProSiteProfiles | 300 | 480 | 181 | 16.395 | ||
| Pfam | 302 | 438 | 137 | 9.4E-11 | ||
| SMART | 321 | 439 | 119 | 1.5E-17 | ||
| Gene3D | 483 | 592 | 110 | 4.5E-35 | – | |
| SMART | 500 | 590 | 91 | 1.4E-35 | ||
| Pfam | 501 | 589 | 89 | 6.5E-24 | ||
| Pfam | 651 | 727 | 77 | 5.6E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi5g1v0242600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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