Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242600 |
| Transcript ID | LotjaGi5g1v0242600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.2 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|A0A0B0N1D1|A0A0B0N1D1_GOSAR Uncharacterized protein; Found in the gene: LotjaGi5g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55116322..55122712) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAACACGTCCCTCCCTCCTTCAATAAAATTGCACCGCAAGTTAACCCTAGCCTTCACCTCTGAGTTTCTAGGGGCTT CGAAGAGGATTGAGATTAGGGTTTTGATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGTTTGATGTGGTGGACGACTCC GCCGTCAAGATGGCCAAAACCAACGGCGCCACCAGCCTCATAAACCACTGGACCGGGAAACCTTACTCCCAGCGGTACTA CGACATTCTCGAGAAACGGAAAACCCTCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGA CTCTCATTCTCGTTGGTGAAACTGGTAGTGGTAAAACCACACAGGTCAGTTTCTCTACTCCAAAACCCTCTCTCAAAATT GAAATTGTAGGGACTCGATGAATTCTACTTGTTTTTGTGTGTAGGTCACTGAATTTTATGGTTTTGTGTTTTTGTTATTG GTGACAGATTCCTCAGTTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCA CTCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTT GGTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATGTTTTGTTTTTCTGTTAAATTACTAC TTTCTTTAGTTAATTGAATTTAGAGTTTCGTGCAGTATTTTGGCCCCGTTTGGAAGAGCTTATTTGAACTTATCTGATAG CTTAAGCTCTTATGTAAGTGTATGGCAGAGCTTATGCAAACAGGCGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTA CTCAAGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAAATTTTAAAATAGC TTATGAATAAGCACTTATGACCATAAGTGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTTTATATAATGTTTTCCCCCC CTATGGGTCTCAATTGGGATGCGTTTTCTTTGCTCCCTGCCACAGGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAA TGGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTG TTTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAA GTTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGG AGCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTT GTTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGT GGGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTC CAGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGT ATAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTC TCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACA CTGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTT ACCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGC TTTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTC CATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCC ATGCTATCAGGTATGATTCTATTTTTAATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAATGTTAAGGGAATGTTG TTGTGTTGGGCTCCACTTTGATATGGATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTGCATACGAGGGGATGTT TGACTGCTTACATGTGTGCTAAGTTGCACATGAATGCGGTTCATTGAGTATGTCCTGTTAGTTAGTCATCAGCAACTGTC TTCTCTGGGTTTCATGCCCCCGGTTGGCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCA GTATTCTCTCATGAAGAAATTGGTGTCGTCTCGCCTCTATGCATCTGCTGACCTTCCGTGGACCTCCTCTGTGATAAATA ATTTCTTTCTCTAGTACCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTG GGCACATTGATGGAGATCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAGTGAGTGCTCATTTCTGCTA CTTTGTTTATTCCCCAATTTGTTGCTATTTATTTTTGTCTAATGTCAAGTTCGTTAATTGTACGTGAATGGTTTTTCAGA TGAGGATCCATCTTGGTGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAG TGCGTATCATGACTCGGTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAG GCAATGCTAGCAGGATATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGT TTGTTGAGATGCACTGCAATTTGTGCTTATCTTCCTTCCTTTTCCATTTTGTACTACAAAAATAGCTATTGTGTAGGCTG AAGGATTGCATTTATATTAATTATTATATTCTGGTGTAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCC CGAGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGT AAGATTTTATTCATTTAGTATTTTGATGGCTTTCCAAGCAAGGTTTGAGTTTGACAACTTGAGCTGGTAAAAAGTAAATA TTTTTCATCCATGATATTTGATGGGAAACTTGTATTCAGTAAAAGTGCTATCAGTAAATATATAGTTTTCTGGCATAAAT TTTGATGCAGGAGCAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTC TGTTTTTAATTAAGTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAG TTAGGATTTTCATTATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCA GTTTATTATTGATAATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCT TGCTAACCCTTACTTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCT GCATCAAGTGGCATCAGAGCAGGCTTTCTCCTGTCTCTTTTCTTTGCTTGATCAACCATGGAAGATCAACCAATGACCAA AGCAGATCTGAAGGATGTTACCGCGGCTCTTACCGCGGCCCTAACTGCTATTACGCAACATATGACACAACAAATGATAC AACATATGGCGACGTTCACGGCGGCTTTAACGGCGCAGATCAACAATACCAACAACGGTAACCGGCGACGAGACAGGAGA GGGAAACCACATAGGTTTCCGCGCGACAACAACAACAATCGTTCCGCTATATCTTTACCTTCCCAATCTTTGCATTCACC ATCCGTATCTCATTCTTATTACCAAGTTCAGTACCCAACCTCTAAAACCACCGAAACTCCACACCCCCAACCTGCTACAT CCAACCTTATCAATCCTTACCCCAACATATCACCGACTGCAAATCCAATTTCCTTGCCACAACCCTTACCAAAACCTATT TCAAATTCATGTCCATCTGCAAGACCTATGTACGCAACTTCTTCGGAATCAGATTCTCAAATTTCATTTGCGCCATCCTC TATTGTTGACATGGAAGATGAGGCAAAAATGTTGGTGGATGATTTGGTACCATCTGCGCAGAAACCAAGGGAAGTAGACG TTACAAAAGATGAAAACTTTGGCCACATGAAGTCCTCAGAGTTTCTTACATTCAAATCTTCAACTCCGCTTCCTACAGGA GTACAAAGCATTATCCCCTATAATTCAAAAGCCCCCAATGTTATTTTGGAGAAACTGGAGAGGTTAGAATTGCTTAAAGA TAGTGATGGTGCTCATGAGATATTTGTTGAAGGAGATGATGAAAAAATAGTTCGAAGTTGTAGTAATGGTGTTGTTCGTT TGGTTGGTTTGCATATTGAAGCCTTTTATTTAGAAGAGAACTTGTGGTCAAGTTCTTTGGAAGAAGAGGAGAATGTAAAG ACATCAGAGGCACTTGGTTGTGACGCATTCATGCGGACATCAGATAGTTCTACACAAATTTGGGTATTTGACCCTGGCAT TCTTAATGTCGTTCATGAGTTCCGAACAGAGGCCTCCTTTGTTTTTTTTTGTTACGTTAGAACTCGGGGTCGAGTTCTTC ACAAGAAGAGGAGCCTGATGCAGGAGCAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCAT TCCGAATCTATTCTGTTTTTAATTAAGTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTT TAGGATCTTTTAGTTAGGATTTTCATTATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGC AATAGCCTATTCAGTTTATTATTGATAATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTT AGGGTTCAGTGCTTGCTAACCCTTACTTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAG TACGACTTCCGCTGCATCAAATTTACTAAAACATATTGTATATTCCTATCATGAATTAATAACACTTGAATAGATGATTT ATGTACAGTGGTAAACACAACTTATTATTTTGAATTCCACTCTTTGATTTTAGCTGGGAGAGAGTTGCAAGAATGATTCT CAAGTATAATGTTGTGGACCTTTCTGTACTAATTTTGGCTGATGTTATTTAGATGTATTAACTTTATGATGTATTATTAT CCTGCAGGATAGTTGATATAGCACCACATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAAGGCGTGTTCTTGAG AAGCTTTACAAGAAGCGAGAGAAGGAAAAAGAGGAATCTAGGGGTCGTAAATGAAGTCCTACCCATCCAAGCCTTTTTTC CCTCTTGGATTGGGATTGGATGTCTCGTCTCTTCCAATTTGACATGATAATTTATTCATGGAAAAGATCCCCAATACTTA CTTTGAACGACATGCTGGTTGTCAGTAGTTTCTTTGAAAAATTGGCCAGTTCCCTGTACTATTTACTAGAGTAGTGGGAA CCTTGTTTTATATTCTTGAACGTTCTGTTGTACCTTAAGGATTATTGCCTGCTCAAATTCGTTTGTTGGATGTTAGTTTC GTTGAAGGTTAGATCCTACTATTGCTTTATCCTACTGATAGTTAACACTCAAAATGAAGTAGAGCGGGATATAGTAATTT GCATGAAGGAATAGATCAAATGTTGATGTTTTAGCCAAATATTGAGGCTTGTCATATCTGGCCCATTTTGTTCTGTTTGC TAGTAACCATACAAATTTTACTTGCCTTGTGCATCCAATTGGATGGTATTTGCTAGCAAGTTGATATTTTTAATGAATTG TTGTCATCTCTATATACTAAAAGTTCTAACTTCTAATGCTTTTCCTCTTTAGCTTATGTTTTAAATTCAATGTGATTTGT TTAATGAACATAGCATTGTTGTGGTACCATAAGAAAATGACTACCTCCTATTCCTGAAAGTATGAGTTTAC
CDS sequence (LotjaGi5g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACAGAGAGGAAGCGGAAGGTGAGTTTGTTTGATGTGGTGGACGACTCCGCCGTCAAGATGGCCAAAACCAACGG CGCCACCAGCCTCATAAACCACTGGACCGGGAAACCTTACTCCCAGCGGTACTACGACATTCTCGAGAAACGGAAAACCC TCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGACTCTCATTCTCGTTGGTGAAACTGGT AGTGGTAAAACCACACAGATTCCTCAGTTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGAT GGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTG GAGAAGAGGTTGGTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATCTTACAGATGGTATG CTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTT GGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAA CACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAA ATTTTCTACACTCAGGAGCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCC TCCTGGAGATATACTTGTTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAA ATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTT GAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTC CTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCG AGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAA TGTTTTAGACTTTACACTGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCT TGCGAACACAGTTCTTACCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCG AGACCTTAATGCGCGCTTTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAG ATTATGAGTGAATTTCCATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGAT TCTTTCAATTTCAGCCATGCTATCAGGTATGATTCTATTTTTAATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAA TGTTAAGGGAATGTTGTTGTGTTGGGCTCCACTTTGATATGGATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTG CATACGAGGGGATGTTTGACTGCTTACATGTGTGCTAAGTTGCACATGAATGCGGTTCATTGA
Protein sequence (LotjaGi5g1v0242600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTERKRKVSLFDVVDDSAVKMAKTNGATSLINHWTGKPYSQRYYDILEKRKTLPVWLQKEEFFKALRENQTLILVGETG SGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGM LLREAMADPLLDRYKVIILDEAHERTLATDVLFGLLKEVLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVE IFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPLKVVPLYSTLPPAMQQKIF EAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGK CFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGE IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSGMILFLIAFFVSVLSLTLMLRECCCVGLHFDMDAQHFYMCTVYIV HTRGCLTAYMCAKLHMNAVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 506 | 506 | - | – | |
| PANTHER | 1 | 520 | 520 | 0.0 | – | |
| PANTHER | 1 | 520 | 520 | 0.0 | – | |
| Gene3D | 8 | 235 | 228 | 1.8E-88 | – | |
| CDD | 42 | 232 | 191 | 9.94774E-126 | – | |
| SUPERFAMILY | 51 | 515 | 465 | 2.17E-121 | ||
| SMART | 52 | 242 | 191 | 4.2E-33 | ||
| ProSiteProfiles | 64 | 233 | 170 | 22.015 | ||
| SMART | 69 | 242 | 174 | 0.0031 | ||
| Pfam | 70 | 214 | 145 | 8.2E-8 | ||
| Gene3D | 236 | 417 | 182 | 3.4E-73 | – | |
| CDD | 237 | 405 | 169 | 1.97944E-87 | – | |
| ProSiteProfiles | 258 | 438 | 181 | 16.395 | ||
| Pfam | 260 | 396 | 137 | 6.0E-11 | ||
| SMART | 279 | 397 | 119 | 1.5E-17 | ||
| Gene3D | 441 | 525 | 85 | 1.7E-30 | – | |
| SMART | 458 | 534 | 77 | 1.3E-17 | ||
| Pfam | 459 | 520 | 62 | 3.0E-19 | ||
| TMHMM | 507 | 529 | 23 | - | – | |
| Phobius | 507 | 526 | 20 | - | – | |
| Phobius | 527 | 580 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi5g1v0242600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…