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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0243900 |
Transcript ID | LotjaGi5g1v0243900.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent Clp protease proteolytic subunit; TAIR: AT1G02560.1 nuclear encoded CLP protease 5; Swiss-Prot: sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; TrEMBL-Plants: tr|A0A151RYF7|A0A151RYF7_CAJCA ATP-dependent Clp protease proteolytic subunit; Found in the gene: LotjaGi5g1v0243900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55250406..55251303) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAGTATGGGAGCTTTTTTGCTTAGCGCAGGGACCAAAGGTAATGATGATTCCTTAAACTTGCAGTCACTATCCAT TTTTTTTTTCTCTTTTCTTTCTTTCTTCTTTTGGCGAATGTCATTTTCCACTTTTCTGAAAAAGAAATTCTTCTTTCTAA CTCTATATCCCCACTACCTCACTTCTGAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTATGATCCATCAACCGCTT GGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGTTTAGGTTCCCTTTTTCTCCCTTTTGTTCTTGTTTACTTT GAAAAAATTATATTCTTTTATCATAGAAAATTAAAACCTGTCATCGGATATTACTCAGTCCAATAAATTGATTTAAACCA AGAAGATGGTAAATTCCCTGATAACCTAAATCTATGAATAAAATATCTCTAGCAATTTCCTTATATTCCTTTGTTTTGTC CTTTTTATATTTCATTTTCTATTATTATGTGTTGGGCTTTGGTTTGTTTTTGTCTGGATTTGATCAGATATTTTCAGTTA GTTGATTTTGAACCCCATTATAATGGGTGATAATTTCTCTATGGACAAGTATCATAAATTTGTGATTCTCTTCGTAACCC TGTTACAGAAAATTAATTATGGTTTGTAATCCTTAGGCAAATGAAATGCTGCATCATAAGGCAAACCTGAATGGATATCT GTCCTATCATACTGGCCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATGAGCGCAAAAGAAGCCA AAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGCCGGCTGCAGAGGAGGGAAAA GATCGGGCTGTTGTTTGA
CDS sequence (LotjaGi5g1v0243900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGTATGGGAGCTTTTTTGCTTAGCGCAGGGACCAAAGGTAAGAGATACAGCTTGCCAAACTCAAGGATTATGAT CCATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGGCAAATGAAATGCTGCATCATAAGGCAA ACCTGAATGGATATCTGTCCTATCATACTGGCCAAAGCTTAGAGAAGATTAACCAGGACACAGACCGTGATTTTTTCATG AGCGCAAAAGAAGCCAAAGAATATGGACTCATAGATGGTGTCATTATGAATCCTCTCAAAGCTCTCCAGCCATTGCCGGC TGCAGAGGAGGGAAAAGATCGGGCTGTTGTTTGA
Protein sequence (LotjaGi5g1v0243900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQSLEKINQDTDRDFFM SAKEAKEYGLIDGVIMNPLKALQPLPAAEEGKDRAVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 4 | 4 | - | – | |
Phobius | 1 | 17 | 17 | - | – | |
Gene3D | 1 | 99 | 99 | 2.6E-34 | – | |
Pfam | 2 | 97 | 96 | 4.9E-41 | ||
PANTHER | 2 | 111 | 110 | 1.4E-78 | ||
PANTHER | 2 | 111 | 110 | 1.4E-78 | – | |
SUPERFAMILY | 3 | 95 | 93 | 1.05E-32 | ||
CDD | 3 | 94 | 92 | 1.03231E-56 | ||
Phobius | 5 | 12 | 8 | - | – | |
Phobius | 13 | 17 | 5 | - | – | |
PRINTS | 16 | 35 | 20 | 1.7E-19 | ||
ProSitePatterns | 17 | 30 | 14 | - | ||
Phobius | 18 | 117 | 100 | - | – | |
PRINTS | 73 | 92 | 20 | 1.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0243900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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