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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0261100 |
| Transcript ID | LotjaGi5g1v0261100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT2G47990.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O82266|SWA1_ARATH Protein SLOW WALKER 1; TrEMBL-Plants: tr|A0A151TWT8|A0A151TWT8_CAJCA U3 small nucleolar RNA-associated protein 15 isogeny; Found in the gene: LotjaGi5g1v0261100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56982382..56984452) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTTGTATTCTCAAAACATACCCTATAAAACCCAACCAAACGACGTCGTGTGTCTCTCTATCTTAAACCCTAAAAAC CTCGTCTTCCTCTTCAGAGTTGCAGCATTTCACAGCATTCATCAATGGAGGAAGCAAGAGTGAAGAGCTACCCTGTGAAA CCGAAGCTCAAAACCAAACCCAGAACTCCATCCCAAACCCTCGAATCAAACTTCTGGTCCTCCTTCAAAACCACCCAAAT CAACAACCTCATCTCCGTCCCTTCCCTCACCTTCTCCCCCACTCACCCTCACTCCTTCGCCGCCGCACACGTCACCTCTC TCTCCATCTTCAACCCTCAAACCCTCACCCTCACCGCCACCATCTCCTCCTTCAAAGACACCGTCTCCTCCGCTTCATTC CGATCTGATTCCCGCCTCATCGCCGCCTCTGACCTCTCCGGCCTCGTCCAGGTCTTCGATGTCAACTCCCGCACCGCTCT CCGCCGCCTCCGCGCTCACACCCGCCCTGTCCGGTTTGTCCACTTCCCCGTCCACGACAAGCTCCACCTAATCTCCGCCG GTGATGACTCCCTCGTGAAGTACTGGGATTACGCCGAACAGAAGCCGGTCCTGGAGTTTCGCGGCCATAAGGACTATGTC CGCTGCGGTGATTCCTCTCCTGTGAATGGGGACACGTTTCTCACTGGTTCCTATGATCACCTTGTTAAGCTATGGGATGT TAGGGTTAGGGATTCGAATTCGACGGCGGCAATGCAGGTTAACCATGGTGCCCCTGTGGAGGATGTGATTTTCCTGCCGT CCGGTGGGATGTTTGCGACGGCGGGTGGGAACTCGGTGAAGCTTTGGGATATGATTGGGGGAGGGAAGCTTGTTGGGTCG ATGGAGAGCCACAATAAGACGGTGACTTCGATTTGTGTCGGTCGGATTGGGAAGGGTTCGGGTGAGGAGGAATCGAATAA ATTTAGGATTATGAGTGTGGGTTTGGATGGGTACTTGAAGGTGTTTGATTATGCCTCTATGAAGGTTACATTTTCAATGA GGTTCCCTGCACCGCTTTTGTCGGTTGCTTACTCGCCGGATTGCTCTACGAGGGTGATTGGGACCTCGAATGGGATAATC TATGCTGGAAAGAGGAAGATGAAGGAGGAAAAGGAAGGGGAAAATGAGGAGAGTGAGTCCAGCTTGTTTTGGAGAATTAG GCCTGTGGAGCATGTCGAGAAGCAGGTGTTGAAGCCTTCGAATTTCAGGTACTTTCACAGAGGGCAAGGAGATAAACCTC GTGAGGGTGATTACTTGGTTATGAGGCCCAAGAAGGTGAAGCTGGCTCAACATGATAAGCTTTTGAAGAAGTTTAGGCAT GGGGAGGCTCTGGTGTCTGTGTTGGAAAGTAAGAACCCTGGGAATGTGGTGGCTGTCATGGAGGAGTTGGTGGCTAGGAG GAAGTTGCTGAGGTGTGTCTCGGACTTGGATTCGGAGAAGCTGGAAATGCTTTTGGTGTTCTTGCATAGGTATTGTACCG AGCCGAGATATTCAAGTTTGCTGATGGGATTGACCAAGAAGGTTCTTGAAATGAGGGCTGATGATATTAGGGCTTCTCAA GCCCTCAGAGGTCATATCAGGAATCTCAAGCGCTCTGTTGAGGAGGAGATTCGGGTTCAACAGTCATTACAGGAGATACA GGGTATAATTTCTCCTTTGTTGAGGATAGCTGGAAGAAGATGAAATTTTGGCTTTCTCTCCTCATCTAGGAGGTGTTTTT GTTCTCATATTGTGCTATTTTATAGAATGTCTTCTTTGTTTTTGTGATTTCAGGATATTTCAGTTTATTTGAGAATTTTT GTGTACCTTTAAAGTGCCGGAAAATATTTAAGTTGTTGCCTTTTTTTGAGGAATTCTACTTGCACTTTCATTTATTGGTT TCATTTGGTACCTTTGGTTTGTGTTGAGTGTGATTTCCCTCCGAACTTGAACAGCGTTTAGGTTATGAATGGGAGGGTAG GGTGGTTCGACAAGTCCATTTTACACTTGCATCCAACTTGTGCTCTTGGGATATTTATCCAGTGGACCAAG
CDS sequence (LotjaGi5g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGCAAGAGTGAAGAGCTACCCTGTGAAACCGAAGCTCAAAACCAAACCCAGAACTCCATCCCAAACCCTCGA ATCAAACTTCTGGTCCTCCTTCAAAACCACCCAAATCAACAACCTCATCTCCGTCCCTTCCCTCACCTTCTCCCCCACTC ACCCTCACTCCTTCGCCGCCGCACACGTCACCTCTCTCTCCATCTTCAACCCTCAAACCCTCACCCTCACCGCCACCATC TCCTCCTTCAAAGACACCGTCTCCTCCGCTTCATTCCGATCTGATTCCCGCCTCATCGCCGCCTCTGACCTCTCCGGCCT CGTCCAGGTCTTCGATGTCAACTCCCGCACCGCTCTCCGCCGCCTCCGCGCTCACACCCGCCCTGTCCGGTTTGTCCACT TCCCCGTCCACGACAAGCTCCACCTAATCTCCGCCGGTGATGACTCCCTCGTGAAGTACTGGGATTACGCCGAACAGAAG CCGGTCCTGGAGTTTCGCGGCCATAAGGACTATGTCCGCTGCGGTGATTCCTCTCCTGTGAATGGGGACACGTTTCTCAC TGGTTCCTATGATCACCTTGTTAAGCTATGGGATGTTAGGGTTAGGGATTCGAATTCGACGGCGGCAATGCAGGTTAACC ATGGTGCCCCTGTGGAGGATGTGATTTTCCTGCCGTCCGGTGGGATGTTTGCGACGGCGGGTGGGAACTCGGTGAAGCTT TGGGATATGATTGGGGGAGGGAAGCTTGTTGGGTCGATGGAGAGCCACAATAAGACGGTGACTTCGATTTGTGTCGGTCG GATTGGGAAGGGTTCGGGTGAGGAGGAATCGAATAAATTTAGGATTATGAGTGTGGGTTTGGATGGGTACTTGAAGGTGT TTGATTATGCCTCTATGAAGGTTACATTTTCAATGAGGTTCCCTGCACCGCTTTTGTCGGTTGCTTACTCGCCGGATTGC TCTACGAGGGTGATTGGGACCTCGAATGGGATAATCTATGCTGGAAAGAGGAAGATGAAGGAGGAAAAGGAAGGGGAAAA TGAGGAGAGTGAGTCCAGCTTGTTTTGGAGAATTAGGCCTGTGGAGCATGTCGAGAAGCAGGTGTTGAAGCCTTCGAATT TCAGGTACTTTCACAGAGGGCAAGGAGATAAACCTCGTGAGGGTGATTACTTGGTTATGAGGCCCAAGAAGGTGAAGCTG GCTCAACATGATAAGCTTTTGAAGAAGTTTAGGCATGGGGAGGCTCTGGTGTCTGTGTTGGAAAGTAAGAACCCTGGGAA TGTGGTGGCTGTCATGGAGGAGTTGGTGGCTAGGAGGAAGTTGCTGAGGTGTGTCTCGGACTTGGATTCGGAGAAGCTGG AAATGCTTTTGGTGTTCTTGCATAGGTATTGTACCGAGCCGAGATATTCAAGTTTGCTGATGGGATTGACCAAGAAGGTT CTTGAAATGAGGGCTGATGATATTAGGGCTTCTCAAGCCCTCAGAGGTCATATCAGGAATCTCAAGCGCTCTGTTGAGGA GGAGATTCGGGTTCAACAGTCATTACAGGAGATACAGGGTATAATTTCTCCTTTGTTGAGGATAGCTGGAAGAAGATGA
Protein sequence (LotjaGi5g1v0261100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEARVKSYPVKPKLKTKPRTPSQTLESNFWSSFKTTQINNLISVPSLTFSPTHPHSFAAAHVTSLSIFNPQTLTLTATI SSFKDTVSSASFRSDSRLIAASDLSGLVQVFDVNSRTALRRLRAHTRPVRFVHFPVHDKLHLISAGDDSLVKYWDYAEQK PVLEFRGHKDYVRCGDSSPVNGDTFLTGSYDHLVKLWDVRVRDSNSTAAMQVNHGAPVEDVIFLPSGGMFATAGGNSVKL WDMIGGGKLVGSMESHNKTVTSICVGRIGKGSGEEESNKFRIMSVGLDGYLKVFDYASMKVTFSMRFPAPLLSVAYSPDC STRVIGTSNGIIYAGKRKMKEEKEGENEESESSLFWRIRPVEHVEKQVLKPSNFRYFHRGQGDKPREGDYLVMRPKKVKL AQHDKLLKKFRHGEALVSVLESKNPGNVVAVMEELVARRKLLRCVSDLDSEKLEMLLVFLHRYCTEPRYSSLLMGLTKKV LEMRADDIRASQALRGHIRNLKRSVEEEIRVQQSLQEIQGIISPLLRIAGRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 10 | 528 | 519 | 1.8E-175 | – | |
| PANTHER | 10 | 528 | 519 | 1.8E-175 | – | |
| SMART | 35 | 70 | 36 | 420.0 | ||
| Gene3D | 38 | 265 | 228 | 1.4E-39 | ||
| SUPERFAMILY | 45 | 334 | 290 | 2.93E-52 | ||
| SMART | 73 | 112 | 40 | 0.043 | ||
| ProSiteProfiles | 80 | 304 | 225 | 24.785 | ||
| SMART | 115 | 155 | 41 | 0.0023 | ||
| ProSiteProfiles | 122 | 164 | 43 | 9.439 | ||
| SMART | 158 | 198 | 41 | 6.0E-7 | ||
| Pfam | 160 | 198 | 39 | 0.0011 | ||
| ProSiteProfiles | 165 | 207 | 43 | 11.478 | ||
| SMART | 204 | 242 | 39 | 0.022 | ||
| Pfam | 214 | 242 | 29 | 0.2 | ||
| SMART | 246 | 295 | 50 | 0.062 | ||
| Gene3D | 275 | 366 | 92 | 1.3E-5 | ||
| Pfam | 384 | 525 | 142 | 1.0E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
Expression pattern of LotjaGi5g1v0261100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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