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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0261800 |
| Transcript ID | LotjaGi5g1v0261800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|I3S8F7|I3S8F7_LOTJA U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi5g1v0261800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57046704..57050208) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTTCAGCTTAGGATCATATTGTACCTCATTACACCATTTTGTTTGTTTCAATTGACTTTAAAAGTGATAAAACAT AATAGATTCTTCTTTCCTCCTCAACAAAGCATCACGTACTAAATAGATTATCAAATCAAATCATAATTTCATGAAAGCTA ATTTAAACTCGAAACCCCTAAATATAGCTCCTAGAAGGTTCCGTTCCGCAGTTTAGAGGTTAAACAGTGTTCACTCCATA ATCGATTGCTTCTCACTCCGCCCTTGGATTTTCAGGGTTTCAACTTCGAACTCTTGAAAATCTGCTACATTGCTAGGGCT ATTCTGAGAAGCCAACGATGCCTCGGTACAGTAACTTAGTTTTTCAAAATCTCGCATACTTCAATTTTTTCGTCGATTCA TCGTTCATTCAATTCATTTTCGTTCGAATTTTCATTGCAGGTACTACTGTGACTACTGCGATACCTATTTGACTCACGAT TCTGTAAGTTGTTTCACTCTCCACTTCTGTTTCCTTCAATCTACTATACTTTAACCTAGTTTTGCCGCTTTTTGTTGAAC ACTTGATTTTTCTCGAGAAAATTTGCTTTTTTGCTTCACTCTTAGTTAAATTATTATTATTATTATTCAAGCATTTTCGG TTTTCTCAATTTTCTAACCTGGATATGCATTGCAACTGAATCTGAAGTTAATTCACTTTGTAAAATTGAAATGGAATTTT CGTTAGCCGTAACCGCGCGCATGTGTGTATATGTTTCTACTAAGTCTGTTTGTTTCATATTGCAGCCATCTGTTAGGAAG CAGCATAACTCTGGTTACAAACACAAGGTGCTGCGAATTTTTTGATTTTTTCAGTTCTTGAAATAAATGCGCTACAATGT AGGGGATATTCGTGATGTTTGATGTGTGCGTGTGTATGTGTTTTCAGGCAAATGTGAGGAACTACTACCAGCAGTTTGAA GAGCAGCAAACGCAAAGTTTAATTGATCAGAGGATCAAAGAGCATCTCGGGCAAGCTGCTGCGTTTCAGCAGGTTGGGGT GGCTTATAATCATCTAATGGTTCCGAGGCCGGGTGGTCCTCCTTTATTGCCAATGCCGCAGCCAAGATTTCCTATGCCTG GAAATGTGCAAATGCCTGGAGGTCAACCACTAATGCCGGGGATGAGACCTCTGATGCCCTTGCCTAGACCTGTTCCTGGT GCACCAGGTGAATATATTTGCGCCGACTCCTTTCCTGATTTATATAAACTGCCATCTCTTCTAATTGAAGCATTCAATCT GGCTTGGGATGTTTTCATGTTTTCTGTATCTCACTTGGAGACATCTTGTTTCCTTTCTAATCTTAAGAAAACTATAAGAT CTGTAATGGTATATGTATACGGGGCTAAATGTTTGGATGTCACACAATAATTAGGTGAGCTTAGTGTAGCAGAGATGCGA ATGTTAAGATGGATGAGTAGTTACTTATGCAAGATATGATAGGATTAGGAATACAATTATAAGAGAGTTGAGCTAGCTGC CATTGTAAAAAAGTTGACTGTATCGCGTATCAGGTGGTTTGGGCATGTCTGGAGAAGATCCATTGAAGCTTCTATAAGGA TGATTGACCAGATGGAAGGGTTCAATAGTTAGTGGTAGAGAAAGACCTTGGAAACCTATTGGCCAAGCCACTAAGTAGGA TTTAGAGGTGAATAATTTATTTGTAAACTAATATATGACTGAGTAGTAGTACTATAATAGCATAGGCTTATTCAGGCAGG TAACACCCCCTCCTGGGAAAAAGTTTAAATGGTAGGTACTAGGTAGTTTAAAAATCATCTCATACCCATTCCTCTTTCTT TCATTTCCTTTTTTTCTTCCAATTTTCTTTCACAATCAAACAAAGCATTAGGGTTGAGGTAGAAGGAAAATCTGGTAATA GCAGTCAAGTCGAAGATCCACTTTTAAGTTCTGGGTTTTTTCCCAAATTGTGAAAAATCGAGCAGTTTCACTGATTTTAC AATCTGAAACATAATTTGACAATATTTTGACATGATTCTGATTGAACATGGAATTTGCATTGTTCTGGTCACTCAAAATC ATAAAATTGCAAATCCTGATTTTGACTACCAGGATGATAATGGTGACATCTGTCTTGCTTTTCCTTATCCTTTTAAAATT ACTATGATTATGCACATCTTGATGGCTAACCACATTATTTTTGGCTTCCATTACTGCAAACTGAATTCTCTTTTTAATAC TTCATACTTATTTCTTTGCCTTTTCTCTATTAAAAAAACTTGATCACTTCCATGAAAAAGAAATTTTTTTTATTAGAAAA AACATGTGTGCTTTTATCTGTTTATTTGGTTAGAATTTTTCATATACACTAGCAACCTTCTATCTTGTTCCATGAGTCTG GAAAATTCTGGCATATCTGATGTAACTGGTTTCCAATTGGAGTTCACAGGATATGTTCCTGCACCTGGTGGGCCGCCAGT GCTACCTCCACCTGGTGCTCCCCAGGTACCAGGTCAACTAAATGCCATACCGAGGCCCCCTTCATTCGCACCCCCGACAA CAGCTCCTGGAAGCACTGCCGCTCCCGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAACCTAATCCA TCAGCACCATCATCTGGAGGCTATGATAACTACAATGCCAATGCTCAAGCACCTGATGGCAATCACTGACCTGGTCAAAC TGGTATGGATGTTATATTGAAACTTAATCTAATTCTAGTTCAATAAAGGATCTTTACCTTATTCTTTGCTATTTTTCAAT CAGTCACTTTGTGATAAAGCAAATTATTTGCAGGATTCAAGCATTCCTCATATTCTACTAATAGCATTCTATTATATTTA TTTATGTGTTGTGCAGTTTTCTGCATAATTATATCTCTACCAGAGTCATATGACCAGAACTATTTCTGCACTCGCTGTCA GCTGTTGATCAAATGAGGATTCTCACAAGCAATTATGTACTTGGATTGTTGGTATGGCATGTCAAACAGCTTTAATGCGG GAATTTTTTTTCAGAGTTACCTTCTTCATCCTGGATGAAATATTTGTATGGGAGTTCCAATTGCATAGAAATTTTCTGAT ATGGCTTGTTGATAGTTTTCATTCTCCAATTAGGCAATTACTTTATTTTGTTAATCTAAGCTTTATTTGGGATAGATTTA GTTGCCATTACGAGTTTGCGAAAGAATTATTATCAAGTTAGGGTCTGAATCCTAAAAGAATTGCTGCCTCAATTTGTCTT TCCTGAAATGTGTGGTTGTGAATTGTGATTAATGTATACATTTGTCCCTAGACAAAGGCCTCTTTTTACAAAAATGAAGT ATAATGAAATCTTTGAAATTCTACAAATAAGCATTCTTTGCATTTCACAATGCGCTTCTCTAATCTGTAGTAAACATGTT AATACCTTATAATTGTTTTCCCAAAGTAAAAGCTGAGCATCAATTGAGAGTTCGTTGTCCAGAAG
CDS sequence (LotjaGi5g1v0261800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCGGTACTACTGTGACTACTGCGATACCTATTTGACTCACGATTCTCCATCTGTTAGGAAGCAGCATAACTCTGG TTACAAACACAAGGCAAATGTGAGGAACTACTACCAGCAGTTTGAAGAGCAGCAAACGCAAAGTTTAATTGATCAGAGGA TCAAAGAGCATCTCGGGCAAGCTGCTGCGTTTCAGCAGGTTGGGGTGGCTTATAATCATCTAATGGTTCCGAGGCCGGGT GGTCCTCCTTTATTGCCAATGCCGCAGCCAAGATTTCCTATGCCTGGAAATGTGCAAATGCCTGGAGGTCAACCACTAAT GCCGGGGATGAGACCTCTGATGCCCTTGCCTAGACCTGTTCCTGGTGCACCAGGATATGTTCCTGCACCTGGTGGGCCGC CAGTGCTACCTCCACCTGGTGCTCCCCAGGTACCAGGTCAACTAAATGCCATACCGAGGCCCCCTTCATTCGCACCCCCG ACAACAGCTCCTGGAAGCACTGCCGCTCCCGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAACCTAA TCCATCAGCACCATCATCTGGAGGCTATGATAACTACAATGCCAATGCTCAAGCACCTGATGGCAATCACTGA
Protein sequence (LotjaGi5g1v0261800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVPRPG GPPLLPMPQPRFPMPGNVQMPGGQPLMPGMRPLMPLPRPVPGAPGYVPAPGGPPVLPPPGAPQVPGQLNAIPRPPSFAPP TTAPGSTAAPASNGAPSMVSSAMYQPNPSAPSSGGYDNYNANAQAPDGNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 55 | 55 | 9.52E-22 | ||
| Hamap | 1 | 177 | 177 | 11.963 | ||
| PANTHER | 1 | 194 | 194 | 1.8E-62 | ||
| PIRSF | 1 | 210 | 210 | 5.3E-34 | ||
| Pfam | 1 | 38 | 38 | 3.4E-22 | ||
| SMART | 1 | 37 | 37 | 1.7E-12 | ||
| PANTHER | 1 | 194 | 194 | 1.8E-62 | – | |
| Gene3D | 1 | 60 | 60 | 7.4E-32 | – | |
| ProSiteProfiles | 4 | 36 | 33 | 12.658 | ||
| MobiDBLite | 124 | 210 | 87 | - | – | |
| MobiDBLite | 124 | 161 | 38 | - | – | |
| MobiDBLite | 162 | 210 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal snRNP assembly | The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome. | ||
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | U1 snRNP | A ribonucleoprotein complex that contains small nuclear RNA U1. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0261800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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