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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0273400 |
| Transcript ID | LotjaGi5g1v0273400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, C3HC4 type (RING finger) protein; TAIR: AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q55874|Y103_SYNY3 Uncharacterized protein sll0103; TrEMBL-Plants: tr|A0A072VZM6|A0A072VZM6_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi5g1v0273400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58690742..58694184) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGCAAATGGAAGAAAGCTAAGGTGGCTTTAGGTCTCAATCTTTGCATGTTTGTTCCCAGAACTCTAGACGACGA ATCGCCGCCGCCGTCCACGGTGGTTTCTGAGAGGTTGTCGGACGCTTCTCTGCTCTCTTCCCGGCAAACCACGCCGGTGC AGTCTTTCAACGGCTTGAAGCTGTCCAAAAGTAGCAGCAAATCTTCCAAGGTTTGTGTCTCTTTTGGATTGTCCACTTGT TGTTGTTTCTTACTGTTCTTTGTTTTTTGTTTTTAATGTTTTGATAAGCTTTGTTTTGCTTGGTTGCTTGGAAAAATTAA TTGAGCAACAGATTTTACTTTGCTAAAAATGGGTTCAGGTTAAAATTTGTGACATTGAAGATATTTTTTGGAGTGTTTTG TGAAGAAGGGTTTAATTGTTTTGGCAGATTTTGTTACTACTTCAGGGCACTATTTAGGCCTCTGACATATCATGTTTTCT TGATTTTCTTAACTCAACAAGAGTTTAATTGAGAACAAACTTGCATTTTGCTAATTAATGTGTGGTTGTGTTATTTGAAT TGAGGGAGTAATGTGAAATGAGTTTGAATGATTCAGGAGCTAAGTTACAAGTAGGGGTTGTTTTCAGGGACCAAAATGCC ATTTTACTCTTCTAATTCCGTCCATTGATTTTATTTTTATGTCTCTTTCAATTGTATTGCAACATGGGTAATTGATAGAT TGATATGTTTTGTTGACCATTCCAACACTGTATCCTTATTTAATTTTGAAGTTTTGTGAGATGAATTCTGATTTTGACCT GCCTTAAGCCGGCATGATTGTTTTTGACATGCTTCAATGCCGCATCTTGTGGATAAGATTTTCCTTTTTTTATTTTTTTC TTCCTTTCTATGGGCTCTGCAGTGTTTATCTATTTATTTTTTTAAAAGCAATTATGATATGATGCATAGTTGGCTTGTTC ATTGAGTCAAAGTCATATTAGCAGTTTTTGACGACTAAGGTCGAACTCATTTGTTGAAAATTTGATTTGTATGAGTGGAA TATCTTTGGACTAGTGTAAACGATGCTTTAATCCCTTTGCCTGACTAGGCAACATGATTAGATGTTTTACCATCCCTCAC AATCTCAGTATGTGTAAAGCTTATTGTTAATAGGAGATCATATGATTGATAGTTAAGTCTTCTTTTTGCAATATGACAGA ATAAAAAAAATATAGTATGAGAATGAGGAAGCGTTTTCTTCTATCCGTCTAAGAATATTTAAGTATAAAAATACTTAAGG TTGGCAGAGTGCTCTCATCCAGGTTCCTAGCCACTGTTAAATGCACAAATCGAGTAGAAATAGTGATATTCAATTTGTGT ATTTATTCACTGTGTCTATATGGAATCTGGTAATGAATTATTTATTTTCATGTAGTCAGAACAACTGTAAAATTATTTAC ATTGAAGTATCAATGTTCTTACAAGCTTTTATTTTTCAACCATTCAGCAAACCTGCTCAATATGCTTAAACAAAATGAAG CAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCACTGCATTGCTTCAAATGTGAAACA TGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGCGCCAGTTTGGATCCTATCCAGG GAAGGGTTTCACCTAGTCCTATAAATTGGCCCCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTTACCCCAT CCTCGCCGAGATTTGAATAGGAGGCATATTGTGCCACTTTATCAAGCTTCTGAACCAGGTGTATTCAATGACGATGAACC CTTGAATCATCAACCTCAACCTGCATTACCTGAGAGAAGCACTTCAGGTAAGAGTACTGAAGATACTGATTCTGTTCGAG CAATGGAGATTAAAACGTACCCCGAAGTGTCAGCTACTCCACGGGCCAAAACTCACTCTAACTTCACAGTTTTGGTTCAT CTCAAAGCTACTGCTGCTGCAGCTGCCGAGAGACAAAACCTTAGTAGAAACCAGGCTAGCTTGACACAGATTTCTCAGAC ACCGCGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGAGTGGAACTAAGCTTGCGCTATTGAAAA GAGCCATGGGGTTTGTTATACAGAATCTAGGCTCTAACGACAGGCTCTCTGTTATTGCTTTCTCTTCCACGGCTCGCCGC CTCTTTCCACTATCTAGGATGACCGATTCTGGACGGCAACTGGCATTACAAGCTGTGAATTCCTTGGTTGCTAATGGGGG TACCAATATTGCTGAAGGGCTGAGAAAAGGCACTAAGATAGTAGAAGACCGAAAAGAAAAGAATCCAGTTGCCAGTATCA TACTGTTGTCTGATGGGCAGGATAATTACACTGTCAGTGGCTCCGGAACTGACCAACCTCAACCGAACTACCATTTGCTT GTGCCTAATTCAATCAGTGGCCGTGATAATTCAGGATTTCAAATTCCGGTGCATGCTTTCGGATTTGGTGCTGATCATGA TGCTTCATCAATGCACTCAATTTCAGAGATCTCCGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTGCAGGATG CATTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTCCAGGAGCTACAAGTGGGAATTGAGTGTGTACACCCAAGC CTCGGTCTTGTCTCACTTAAAGCAGGAAGTTACCCGAGCCGGTTGGTAGCTGATGGCCGCAAAGGGTTTATTGATGTTGG AGACTTGTATGCTGATGAAGAGAGGGATTTTCTTGTTTCTGTTAATGTCCCTGCTACTTCAGGCAATGAAACATCATTGA TAAAGGTCACGTGTGCTTACAAGGATCCCTTGACTCAAGAAATAGCAGTGTTAGAAAGTGAAGAAGTGAAGATTGAGAGG CCTGAAATAGCTGGACAGGTTGTGATGTCACTTGAAGTGGACAGACAGCGCAACCGGCTCCAAGCAGCTGAGGCAATGGC CCAGGCACGTGTTGCAGCTGAACAGGGAGACCTAACAGGAGCAGTGTCAATCCTTGAAAACTGTCGGAAGACGCTTTCTG AGACCGTATCGGCCAAATCTCATGACCGTCTTTGCATGGCGTTGGATGCTGAACTAAAGGAAATGCAGGAACGAATGGTG AGTAGGCATGTGTATGAAGCATCTGGAAGAGCATACATACTTTCCGGATTGAGCTCACACTCATGGCAACGAGCAACTGC AAGAGGCGATTCCACGGATCAGTCGAGCCTTGTTCAGGCTTATCAGACCCCATCAATGGTTGAGATGCTTACTCGATCTC AGGCCATGCTACTAGGTAGTCCATCAGGTCAGAGGTTTCTCCAGCCACTGTTGTCATTGAGATCACAACCAAGCCCAAGG TAG
CDS sequence (LotjaGi5g1v0273400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAGGATCTGGCCATGCTATATTCACTGCAGAATGTTCACATTCATTCCATTTCCACTGCATTGCTTCAAATGT GAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCCGGCGCCAGTTTGGATCCTA TCCAGGGAAGGGTTTCACCTAGTCCTATAAATTGGCCCCAAAATGACGCTTTGATGGCTGTGGTCCACCGCCTACCTTTA CCCCATCCTCGCCGAGATTTGAATAGGAGGCATATTGTGCCACTTTATCAAGCTTCTGAACCAGGTGTATTCAATGACGA TGAACCCTTGAATCATCAACCTCAACCTGCATTACCTGAGAGAAGCACTTCAGGTAAGAGTACTGAAGATACTGATTCTG TTCGAGCAATGGAGATTAAAACGTACCCCGAAGTGTCAGCTACTCCACGGGCCAAAACTCACTCTAACTTCACAGTTTTG GTTCATCTCAAAGCTACTGCTGCTGCAGCTGCCGAGAGACAAAACCTTAGTAGAAACCAGGCTAGCTTGACACAGATTTC TCAGACACCGCGTGCCCCTGTTGACTTGGTCACTGTGCTTGATGTCAGTGGTAGCATGAGTGGAACTAAGCTTGCGCTAT TGAAAAGAGCCATGGGGTTTGTTATACAGAATCTAGGCTCTAACGACAGGCTCTCTGTTATTGCTTTCTCTTCCACGGCT CGCCGCCTCTTTCCACTATCTAGGATGACCGATTCTGGACGGCAACTGGCATTACAAGCTGTGAATTCCTTGGTTGCTAA TGGGGGTACCAATATTGCTGAAGGGCTGAGAAAAGGCACTAAGATAGTAGAAGACCGAAAAGAAAAGAATCCAGTTGCCA GTATCATACTGTTGTCTGATGGGCAGGATAATTACACTGTCAGTGGCTCCGGAACTGACCAACCTCAACCGAACTACCAT TTGCTTGTGCCTAATTCAATCAGTGGCCGTGATAATTCAGGATTTCAAATTCCGGTGCATGCTTTCGGATTTGGTGCTGA TCATGATGCTTCATCAATGCACTCAATTTCAGAGATCTCCGGTGGCACATTTTCTTTCATCGAGACTGAAGCTGTGTTGC AGGATGCATTTGCACAATGCATTGGAGGACTTCTGAGTGTTGTTGTCCAGGAGCTACAAGTGGGAATTGAGTGTGTACAC CCAAGCCTCGGTCTTGTCTCACTTAAAGCAGGAAGTTACCCGAGCCGGTTGGTAGCTGATGGCCGCAAAGGGTTTATTGA TGTTGGAGACTTGTATGCTGATGAAGAGAGGGATTTTCTTGTTTCTGTTAATGTCCCTGCTACTTCAGGCAATGAAACAT CATTGATAAAGGTCACGTGTGCTTACAAGGATCCCTTGACTCAAGAAATAGCAGTGTTAGAAAGTGAAGAAGTGAAGATT GAGAGGCCTGAAATAGCTGGACAGGTTGTGATGTCACTTGAAGTGGACAGACAGCGCAACCGGCTCCAAGCAGCTGAGGC AATGGCCCAGGCACGTGTTGCAGCTGAACAGGGAGACCTAACAGGAGCAGTGTCAATCCTTGAAAACTGTCGGAAGACGC TTTCTGAGACCGTATCGGCCAAATCTCATGACCGTCTTTGCATGGCGTTGGATGCTGAACTAAAGGAAATGCAGGAACGA ATGGTGAGTAGGCATGTGTATGAAGCATCTGGAAGAGCATACATACTTTCCGGATTGAGCTCACACTCATGGCAACGAGC AACTGCAAGAGGCGATTCCACGGATCAGTCGAGCCTTGTTCAGGCTTATCAGACCCCATCAATGGTTGAGATGCTTACTC GATCTCAGGCCATGCTACTAGGTAGTCCATCAGGTCAGAGGTTTCTCCAGCCACTGTTGTCATTGAGATCACAACCAAGC CCAAGGTAG
Protein sequence (LotjaGi5g1v0273400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGASLDPIQGRVSPSPINWPQNDALMAVVHRLPL PHPRRDLNRRHIVPLYQASEPGVFNDDEPLNHQPQPALPERSTSGKSTEDTDSVRAMEIKTYPEVSATPRAKTHSNFTVL VHLKATAAAAAERQNLSRNQASLTQISQTPRAPVDLVTVLDVSGSMSGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTA RRLFPLSRMTDSGRQLALQAVNSLVANGGTNIAEGLRKGTKIVEDRKEKNPVASIILLSDGQDNYTVSGSGTDQPQPNYH LLVPNSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECVH PSLGLVSLKAGSYPSRLVADGRKGFIDVGDLYADEERDFLVSVNVPATSGNETSLIKVTCAYKDPLTQEIAVLESEEVKI ERPEIAGQVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLTGAVSILENCRKTLSETVSAKSHDRLCMALDAELKEMQER MVSRHVYEASGRAYILSGLSSHSWQRATARGDSTDQSSLVQAYQTPSMVEMLTRSQAMLLGSPSGQRFLQPLLSLRSQPS PR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 628 | 628 | 0.0 | – | |
| PANTHER | 1 | 628 | 628 | 0.0 | – | |
| Gene3D | 1 | 44 | 44 | 2.7E-8 | ||
| SUPERFAMILY | 7 | 44 | 38 | 1.14E-9 | – | |
| Pfam | 11 | 37 | 27 | 2.1E-4 | ||
| MobiDBLite | 101 | 134 | 34 | - | – | |
| SUPERFAMILY | 190 | 381 | 192 | 5.98E-33 | ||
| SMART | 193 | 380 | 188 | 3.3E-28 | ||
| CDD | 194 | 368 | 175 | 1.37894E-56 | – | |
| Pfam | 195 | 378 | 184 | 1.2E-25 | ||
| ProSiteProfiles | 195 | 381 | 187 | 16.505 | ||
| Gene3D | 195 | 382 | 188 | 1.9E-44 | ||
| Coils | 540 | 560 | 21 | - | – | |
| Pfam | 544 | 616 | 73 | 7.2E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0273400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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