Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0289500.3

Overview

Field Value
Gene ID LotjaGi5g1v0289500
Transcript ID LotjaGi5g1v0289500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|A0A0L9TZ92|A0A0L9TZ92_PHAAN Cellulose synthase; Found in the gene: LotjaGi5g1v0289500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60632954..60638162) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACACCAATGGGAGACTAATTGCAGGTTCACACAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAG AGTGAGTGTGCTTTCTCTTTTCTTATGTTGCTTTGCTGCTTTGAAGAAATTGCAGCTTCAAAATGTGCTATTTTTACTTC TGTCCCTTGTTTCTTTCTTGTGGATTTCCATGCTGAATTACTAACCCAGTTTGTTTCTCTTGCATTCTAAGTTCTTCATT TTATTCTCATGGGCACTTCACACTTTGTACCTGCGTGAGTGTGAGTTTTCGTGGGAATAGTTTCTGAAAGTGTATTTTTT TTTTCTGATTGCAATGAGAGTTTCATTCTGCAATGATTTTACTAGCTGGTTTTTTCCTCCTCTTTGTTGATTGATACTCT AGGAATTTTCCATCCAAGCTCTTCCATTTGCTTTTCTGTTTTCCTCTACTTTTCGTCCAATTAAGTATCTTAGGGTGAAC TATTTTGTTTCTTGCCTGTTTCTGTTTTCTACTCTTTCTTTATTTCAGAGCTAGTAATTAACTGCATGAAAAGTTTCCAA TTTGATGCTGATTATTGTTCTTTCCCTCTTCTGTTAGTGTACTCTACTTTCTAATTTTCATGGCCTGGTGAGGTTAACAT TAGCAATAACTCATTTTATTTGCAGGTCAATGCTGTTACAGAATTGAGTGGGCAAATTTGCCAGATCTGTGGTGATGAGA TAGAGGTGACAGTGGATGGGGAACCATTTGTTGCTTGCAATGAATGTGCGTTCCCCGTGTGCAGACCTTGCTATGAGTAT GAAAGAAGAGAGGGGAACAAAGTTTGCCCTCAGTGTAAAACCAAATACAAGCGCATAAAGGGTGAGGCTTCTTCAGCCAA CTCTTGCTTTGAGCTCTTTGTTATGTAAGATAACCTGAAGAAATAGATTTGGCTAACAAAGTGACTGATATCAGGTAGTC CTAGAGTTGAGGGTGATGAAGAAGAGGATGGTGTTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGTGC GACCATCATCACATTGCTGAGGCCGTGCTCTCTGCTCGCCTCAACACTGGTCGTAGTTCACAAATGGATGCTTCAAGAGT CACTACGCCATCGGAGTTTGATGCGGTTTCTGTGGCTGCTGATATTCCTCTCCTGACATATGATAACGAGGTTAACTGAT TTGCAAGTCTCATGGTTGTTCTTGCTTTGGCTATGCCTTTTCTGTATCATAGTTGTCTAAATATGTGTTTTGTCAATTAA GGATGTTGGCATTTCTGCTGATAAACATGCGGTCATTATTCCTCCATTTGTGTCTCGTGGGAGACGGGTTCATCCTATGC ATTTTCCTGATTCAACTGTGCCGGGTAAGTTGTTTTATTTTGTTCTGGTTTGTATGCACACATGCCTTGTTAACCTGTTG TATGTTCAAACTAGTTTCTTTGTCCTCTATCTTATTACAATTAATGGTGGTGGTGATGCAGTTCAACCCAGAGCTATGGA TCCTAAAAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGAATGGAGGAATGGAAGAAAAAGCAGA ATGAAAAACTTGAGGAGGTTAAGGACAAAGGGGGTAAGAACTGTGAAATAAATGGTGACCAGATTGATGACCCTGATTTG CCAAAGTAAGTGCTATTAATAATTCTTATCATGAACTTCAAAAAAAAAAAAATTCTTATCATTACTGTCAAAAAAATAAT TCTTATCATTAGTAGATGGAAAATTTGATCCTAACTTGGTCAGGTTTTAGTCTTTATTTTAGATTGCTCAATACTGCAAT TGAAGACTCGTCAATTGCTATCATACACTTGCTTTCTACTTGGTTTAACATATCTGATTTGAACCTGTGTTAACAGAATG GATGAAGGGAGACAGCCACTGTGGAGGAAGCTTCCTATTAGTCCAAGCAAGATAAATCCATATCGAATTATAATAGTGCT CCGAATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAACGATGCATACGCATTGTGGCTTACAT CAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTCTGGATCAGTTTCCAAAATGGTGCCCAGTTGAGCGAGAAACG TACCTTGATCGTTTGTCACTAAGGTATATAAATATTATATCTTTCTACGTTCTTCTCCCATTGTGTGCCTGAGAGATTTC TGGTTCAATTATTGTATAGCTAATTTTATACATCTTAACAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATAT AGACATATTTGTTAGCACAGTAGATCCTTTGAAAGAGCCTCCACTTATAACTGCAAACACGGTTCTGTCCATCCTAGCTG TAGATTATCCAGTGGGAAAAGTTTCATGCTATGTGTCCGATGATGGTGCAGCTATGCTCACATTTGAAGCCCTTTCGGAG ACATCCGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTTAGCATTGAGCCACGGGCTCCTGAATGGTATTTTGC TCACACGGTTGACTATCTGAAGCACAAAGTGGATGCATCATTCATAAGGGAGCGCCGCGCTATCAAGGTTTGACTGCTTG TTCTTATTGTGCTTTTTCTTTGCTTCATTTGTGTAGTCTCAAACAAAACCAATGATGAATTGCATTACATTGCATCTTGT GTTTCTAATGGTACAGAGAGAATATGAAGAGTTCAAAGTGCGGATTAATGCACTGGTTGCAACGGCACAGAAGGTTCCTG AGGATGGCTGGACAATGCAGGATGGGACTCCATGGCCCGGAAACAATGTCCGAGATCATCCTGGAATGATTCAGGTGAGT AGTATTGTATGATGCAAATTTTTCTCTTTAGTCTAGACTGTGAAAATGCTGAGTCCATTTGGATAAGATTAAGTGTGATT CACTTGTATAGGTTTTCCTTGGCCAAAATGGTGTTCATGATGTTGAGGGGAATGAGTTACCTCGTCTTGTCTACGTGTCT CGAGAGAAAAGGCCTGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATTCCTTGGTAGAGTCCCTTTATCTCTCTCA CATAAACTTTTCTGATTTCTAGTGTCTTTACCCTTTTCATTTTCCCAACCAAATTTTTACAATGTGTTGGTTGATTGTTA AGGTGCGAGTCTCCGCAGTGATATCAAATGCTCCTTACCTACTTAATGTCGATTGTGATCACTACATAAACAACAGTAAG GCTCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTTCAGTTTCCTCAAAGATT TGATGGCATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATGTAAGTAAGAATTCCTTGTTGATTT GTGCTACATATTTATACTTGGTTTGTGATTTAAAGGGAAAGGCTAAGATCTGTTTCAATGTATTTTCATAGATCAACATG AAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACGGGGTGTGTCTTCAGGCGGCAGGCACTCTATGGATATGA TGCCCCTGCTAAGAAGAAACCGCCAACAAAGACATGTAACTGTTTTCCCAAATGGTGCTGCCTGTGTAGTGGATCTCGGA AGAAGAATAGGAATGTGAAAATGAGTCCGAGAAAGAAGATAAAGAATAAGGATGTTACAAAGCAAATACATGCACTAGAA AGTATTGAAGAGGGAATTGAAGGTACAAGATTCCTCAAATTGGCTATGCCTTTTAATCTGTGTGTATATGATGCATGGAT ACTTTAATTTGCTGACGCGATGTATTTGTGTTTCTCTTGAAATCCGAATCACAGGAATCGACAGTGAGAAGTCATCACTA ATGTCACAGCTAAAATTTGAGAAGAAATTCGGGCAATCAGCTGTTTTCATTGCTTCAACTCTTATGGAAGATGGGGGCTT TCTGAAGGGAGCATCTTCTGCATCACTCTTGAAAGAAGCCATCCATGTTATTAGTTGTGGATATGAAGATAAGACAGAGT GGGGGAAAGAGGTAAGTATATGATAATATGACACATTTCATGGCTCTTTATTATTTATAGTTGTGTAACTTTGCTAAATT CTAATTGTGTTTCAGGTTGGATGGATATATGGTTCTGTCACAGAGGATATTTTAACAGGTTTCAAGATGCACTGCCACGG TTGGCGATCCGTGTACTGCATGCCTAAAAGGCCTGCTTTCAAGGGTTCAGCTCCCATAAATCTCTCGGATCGTCTGAACC AAGTTCTCCGGTGGGCACTTGGATCGGTTGAGATCCTGCTGAGCAGGCATTGTCCTATATGGTATGGATACGGCTGTGGC TTAAAATGGTTGGAGCGCTTATCTTACATAAACTCAGTGGTTTATCCTTTGACATCAATTCCCTTAATTGCCTATTGTAC CTTGCCTGCTGTCTGTCTTCTCACCGGGAAGTTCATAGTACCTGAGGTAAGACTAAACCCTAAACCCAAACATTATTGGA TTACTATTTGATTTTACATTCTAGAAATCAATTTAACATGTTTACTTCTTCATTTTGGTGTTACCAGATTAGCAACTATG CTAGCATCATTTTCATGGCACTCTTCATCTTTATAGCTGCAACTAGCATCCTGGAAATGCAATGGGGTGGTGTTGGCATC CATGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTGGCGCCTCCTCGCATCTCTTTGCTCTCTTTCAAGGATTGCT TAAGGTTCTTGCAGGAGTTAACACAAATTTCACTGTCACATCCAAGGCTGCAGATGATGGAGAATTTGCTGAGCTCTACC TCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTTATCATAAACATAATTGGAGTTATTGTAGGTGTTTCA GATGCAATAAACAATGGCTATGAGACATGGGGTCCTCTGTTTGGTAAGCTTTTCTTTGCTCTATGGGTCATTGTCCATCT ATACCCTTTCCTCAAGGGAGTTATGGGAAAACATGAAGGTGCTCCTACCATAATTTTGGTCTGGTCTATTCTTCTTGCTT CAATCTTCTCACTTCTTTGGGTGCGGATCAACCCGTTTTTGGCTAAAGGTGACATTGTGTTGGAACTTTGTGGGTTGAAT TGTGACTAG 

CDS sequence (LotjaGi5g1v0289500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACCAATGGGAGACTAATTGCAGGTTCACACAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAG AGTCAATGCTGTTACAGAATTGAGTGGGCAAATTTGCCAGATCTGTGGTGATGAGATAGAGGTGACAGTGGATGGGGAAC CATTTGTTGCTTGCAATGAATGTGCGTTCCCCGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACAAAGTT TGCCCTCAGTGTAAAACCAAATACAAGCGCATAAAGGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGGTGTTGA TGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGTGGTCGTAGTTCACAAATGGATGCTTCAAGAGTCACTACGC CATCGGAGTTTGATGCGGTTTCTGTGGCTGCTGATATTCCTCTCCTGACATATGATAACGAGGATGTTGGCATTTCTGCT GATAAACATGCGGTCATTATTCCTCCATTTGTGTCTCGTGGGAGACGGGTTCATCCTATGCATTTTCCTGATTCAACTGT GCCGGTTCAACCCAGAGCTATGGATCCTAAAAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGAA TGGAGGAATGGAAGAAAAAGCAGAATGAAAAACTTGAGGAGGTTAAGGACAAAGGGGGTAAGAACTGTGAAATAAATGGT GACCAGATTGATGACCCTGATTTGCCAAAAATGGATGAAGGGAGACAGCCACTGTGGAGGAAGCTTCCTATTAGTCCAAG CAAGATAAATCCATATCGAATTATAATAGTGCTCCGAATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATC CAGTCAACGATGCATACGCATTGTGGCTTACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTCTGGATCAG TTTCCAAAATGGTGCCCAGTTGAGCGAGAAACGTACCTTGATCGTTTGTCACTAAGGTATGAGAAAGAAGGAAAGCCATC TGAATTAGCTGATATAGACATATTTGTTAGCACAGTAGATCCTTTGAAAGAGCCTCCACTTATAACTGCAAACACGGTTC TGTCCATCCTAGCTGTAGATTATCCAGTGGGAAAAGTTTCATGCTATGTGTCCGATGATGGTGCAGCTATGCTCACATTT GAAGCCCTTTCGGAGACATCCGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTTAGCATTGAGCCACGGGCTCC TGAATGGTATTTTGCTCACACGGTTGACTATCTGAAGCACAAAGTGGATGCATCATTCATAAGGGAGCGCCGCGCTATCA AGAGAGAATATGAAGAGTTCAAAGTGCGGATTAATGCACTGGTTGCAACGGCACAGAAGGTTCCTGAGGATGGCTGGACA ATGCAGGATGGGACTCCATGGCCCGGAAACAATGTCCGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGCCAAAATGG TGTTCATGATGTTGAGGGGAATGAGTTACCTCGTCTTGTCTACGTGTCTCGAGAGAAAAGGCCTGGATTTGAACACCACA AAAAAGCTGGTGCTATGAATTCCTTGGTGCGAGTCTCCGCAGTGATATCAAATGCTCCTTACCTACTTAATGTCGATTGT GATCACTACATAAACAACAGTAAGGCTCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATG CTATGTTCAGTTTCCTCAAAGATTTGATGGCATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATA TCAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACGGGGTGTGTCTTCAGGCGGCAGGCACTCTAT GGATATGATGCCCCTGCTAAGAAGAAACCGCCAACAAAGACATGTAACTGTTTTCCCAAATGGTGCTGCCTGTGTAGTGG ATCTCGGAAGAAGAATAGGAATGTGAAAATGAGTCCGAGAAAGAAGATAAAGAATAAGGATGTTACAAAGCAAATACATG CACTAGAAAGTATTGAAGAGGGAATTGAAGGAATCGACAGTGAGAAGTCATCACTAATGTCACAGCTAAAATTTGAGAAG AAATTCGGGCAATCAGCTGTTTTCATTGCTTCAACTCTTATGGAAGATGGGGGCTTTCTGAAGGGAGCATCTTCTGCATC ACTCTTGAAAGAAGCCATCCATGTTATTAGTTGTGGATATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATAT ATGGTTCTGTCACAGAGGATATTTTAACAGGTTTCAAGATGCACTGCCACGGTTGGCGATCCGTGTACTGCATGCCTAAA AGGCCTGCTTTCAAGGGTTCAGCTCCCATAAATCTCTCGGATCGTCTGAACCAAGTTCTCCGGTGGGCACTTGGATCGGT TGAGATCCTGCTGAGCAGGCATTGTCCTATATGGTATGGATACGGCTGTGGCTTAAAATGGTTGGAGCGCTTATCTTACA TAAACTCAGTGGTTTATCCTTTGACATCAATTCCCTTAATTGCCTATTGTACCTTGCCTGCTGTCTGTCTTCTCACCGGG AAGTTCATAGTACCTGAGATTAGCAACTATGCTAGCATCATTTTCATGGCACTCTTCATCTTTATAGCTGCAACTAGCAT CCTGGAAATGCAATGGGGTGGTGTTGGCATCCATGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTGGCGCCTCCT CGCATCTCTTTGCTCTCTTTCAAGGATTGCTTAAGGTTCTTGCAGGAGTTAACACAAATTTCACTGTCACATCCAAGGCT GCAGATGATGGAGAATTTGCTGAGCTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTTATCAT AAACATAATTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGCTATGAGACATGGGGTCCTCTGTTTGGTAAGC TTTTCTTTGCTCTATGGGTCATTGTCCATCTATACCCTTTCCTCAAGGGAGTTATGGGAAAACATGAAGGTGCTCCTACC ATAATTTTGGTCTGGTCTATTCTTCTTGCTTCAATCTTCTCACTTCTTTGGGTGCGGATCAACCCGTTTTTGGCTAAAGG TGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGACTAG 

Protein sequence (LotjaGi5g1v0289500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTNGRLIAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNKV CPQCKTKYKRIKGSPRVEGDEEEDGVDDLENEFDIGSNISGRSSQMDASRVTTPSEFDAVSVAADIPLLTYDNEDVGISA DKHAVIIPPFVSRGRRVHPMHFPDSTVPVQPRAMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKLEEVKDKGGKNCEING DQIDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQ FPKWCPVERETYLDRLSLRYEKEGKPSELADIDIFVSTVDPLKEPPLITANTVLSILAVDYPVGKVSCYVSDDGAAMLTF EALSETSEFARKWVPFCKKFSIEPRAPEWYFAHTVDYLKHKVDASFIRERRAIKREYEEFKVRINALVATAQKVPEDGWT MQDGTPWPGNNVRDHPGMIQVFLGQNGVHDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVISNAPYLLNVDC DHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY GYDAPAKKKPPTKTCNCFPKWCCLCSGSRKKNRNVKMSPRKKIKNKDVTKQIHALESIEEGIEGIDSEKSSLMSQLKFEK KFGQSAVFIASTLMEDGGFLKGASSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPK RPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERLSYINSVVYPLTSIPLIAYCTLPAVCLLTG KFIVPEISNYASIIFMALFIFIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKA ADDGEFAELYLFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYETWGPLFGKLFFALWVIVHLYPFLKGVMGKHEGAPT IILVWSILLASIFSLLWVRINPFLAKGDIVLELCGLNCD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 1077 1077 0.0
PANTHER 1 1077 1077 0.0
Phobius 1 271 271 -
Gene3D 21 112 92 8.6E-42
SUPERFAMILY 27 107 81 6.24E-36
Pfam 31 105 75 4.5E-40
CDD 37 87 51 1.79918E-33
Coils 211 231 21 -
MobiDBLite 226 250 25 -
Phobius 272 292 21 -
Phobius 293 298 6 -
Phobius 299 318 20 -
Phobius 319 856 538 -
Pfam 352 1068 717 0.0
SUPERFAMILY 366 890 525 1.24E-9
Gene3D 500 644 145 5.3E-14
TMHMM 856 878 23 -
Phobius 857 878 22 -
Phobius 879 889 11 -
Phobius 890 908 19 -
TMHMM 890 912 23 -
Phobius 909 927 19 -
TMHMM 927 949 23 -
Phobius 928 950 23 -
Phobius 951 970 20 -
Phobius 971 995 25 -
TMHMM 974 996 23 -
Phobius 996 1006 11 -
TMHMM 1006 1028 23 -
Phobius 1007 1028 22 -
Phobius 1029 1039 11 -
Phobius 1040 1060 21 -
TMHMM 1041 1060 20 -
Phobius 1061 1079 19 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).
Biological process Cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0289500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…