Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0300100 |
Transcript ID | LotjaGi5g1v0300100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61735160..61739805) extracted from Lotus japonicus Gifu genome v1.2.
CGCCTAACGCCGTCACGGTCCCGTCACATCCCATCTATAAAGAACCTCTTTCAGTCATTCTTGTTCCCTCTCACTTCACA GACCCGCTGACATCATTTTCTGCTTTTCTCTCTCTAGAACTCGCTCCGTCACTCACCTCTCTCTCTCTCTAAAACTCGTT CTCCGAACTCAGTCAAAATGCGTGAGATTCTTCACATCCAGGGAGGACAATGCGGGAACCAGATCGGAGCAAAGTTCTGG GAGGTGGTGTGCGCGGAGCACGGGATCGACTCCACCGGAAGGTACCAGGGGAACACTGACATGCAACTCGAGCGAGTCAA TGTCTACTACAATGAAGCGAGTTGCGGGAGGTTTGTACCTAGGGCGGTGCTCATGGATCTGGAGCCTGGCACCATGGACA GTGTCAGATCTGGTCCATACGGCCAGATTTTCCGGCCGGATAACTTTGTTTTCGGACAGTCCGGCGCCGGAAACAACTGG GCTAAGGGTCACTACACCGAGGGGGCTGAGTTGATTGACTCGGTCCTCGATGTGGTCAGAAAGGAGGCTGAGAACTGTGA TTGCCTTCAAGGTATTGTTTACTACTTCACTTCAATTTCTGATCCAAGTTTTTTTGAGATTTTAGGGTTTTGTTTTTTGA ATTTTTTCTGCAGTTTGTTTCTCCACAATGTTGTATACTCTGTGTTTACGGTTTATTTTTCAATTTGATTTTTAGTTGTT GATGATTTTCTTGTTTGTTTGTTAACGATTTAGTGATCTCTGCGTTTTGAATGAAAATGATGAACTCTGAGTTGCAAATC TCGCTGTGTTATCAAGTTTTGAAGTTAAATCGTAGAGTATGGGACCTTGATCTGGTGAATAGCGTTTGTTTGTGCTGATT TTGAAGTTTGGTAGTTCTTACAAACTTGATTATGCTACTGTATGAACAGTTATTTTTCAATTGAAGTTGGTGTGAGATTT GTGAAATCAGGATGAACTACCATATTTGTTGATATGTGAATTTATTTCACAGTTTGTAGAAATGTTCCATGCATGCATTG ATTGAGTTATTCACTGTTTTATTGGCTTGTAAATAGGGTTCTTAACATTTCTGGTTTACTCTTTCAGGGTTTCAGGTTTG CCACTCTCTTGGTGGTGGAACTGGTTCCGGAATGGGAACACTTTTGATTTCCAAGATCAGAGAAGAGTACCCTGATCGAA TGATGCTCACTTTCTCTGTGTTCCCATCGCCTAAGGTATCTGACACTGTTGTTGAGCCTTACAATGCCACACTCTCTGTG CACCAGCTTGTTGAGAACGCTGATGAATGCATGGTGTTGGATAATGAAGCTCTTTATGATATCTGCTTCCGAACCCTTAA GCTCACTACTCCAAGCTGTATGTTCACATCAACTCATGTTTGCACTATTTCTATATTTGCTTGCATTGCTTTGTGATTAA AATCAACTAATTGGGTTTTTTGTTTTTGTTGTTTGGTTGCAGTTGGAGATTTGAACCATCTCATTTCAGCCACCATGAGT GGTGTGACATGCTGTCTTCGATTCCCTGGTCAACTCAATTCTGATCTGCGGAAGCTGGCCGTGAATCTCATTCCCTTCCC TCGTCTGCATTTCTTCATGGTGGGATTTGCCCCACTCACATCACGTGGATCACAGCAGTACAGGGCCCTCACTGTGCCTG AGTTGACCCAACAAATGTGGGATGCCAAGAACATGATGTGCGCAGCTGATCCTCGACACGGTCGTTACTTGACAGCTTCT GCCATGTTCCGTGGGAAGATGAGCACCAAGGAGGTTGATGAGCAGATGATCAATGTCCAGAACAAGAATTCCTCCTACTT TGTCGAGTGGATCCCCAACAATGTTAAGTCCACTGTCTGTGACATCCCTCCAACTGGTCTCAAAATGGCTTCCACCTTCA TTGGCAACTCCACATCCATTCAAGAGATGTTCCGGAGGGTGAGTGAGCAGTTCACAGCTATGTTCCGCAGGAAGGCTTTC TTGCATTGGTACACCGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTTGTCTCGGA GTACCAGCAGTACCAGGATGCAACTGCAGATGATGAGGGGTATGACTATGAAGATGAGGATGAAGTTCAGGAGGAGGATT CTTAGTTGTAATGTTTTGAATGGTGTTTTTGTCTGTGTGTGTGTTATGATGAGACTTTTGCCATATGTTGTCTTTTTCTC CCTCAACCTGAATACCTTTTTCAGGGGGTTTCTGATATGTTAGTTTGTAGGGTGGGTCTTTATTTTTCTGCATGTTTCTG TTATAATTGTTAAGATGATGATGCAGTTTTAATTTCTGGATTGACCTAGATATTAAAATGATGACTTGGATATATTCAGC TCTTGGATTGAATCAGTTGCTGCTTATGTTTTTTTATGCTTAGTAGTACTAAGTTACATTTTTTTGCGGGTTTAATGAGA TTCCCATTAACTTCAATCCAACATTTTATATGTTTTTGCTCTGGAAAGTTTGCACCAAAAGAGGACTAGTAATTCATATA GCTGTGGTGATTTTGGTGTTTTAATTGCGGTTAATTTGAATCGAAAAATCCTGTTACAACATTCACTCATTGAATTATTG AAGTTCATGCGAGGTTTGCTAAAATCCGAATTCAAATTTTCTTTCTGTTTTCTGGTGACCCTTATTTATTGAAATTTATT CGAGAAGCCGTTTTCATTAGGGGCTATCTCAATGTGATCAGAATAAGAGACACGTCTCTAATTATAACCAGCAATTTTAT TTCTCTAATATTGTGGATGCCACACCTTATTGGTACTATGAGAAGATCCACCACTGCCAGCAAAATATGTAGGAACAACT TCATTAGCTATTACAAACTAAACATGGTGTGCCTCTGAACTCAACCTGTTTAATAATAAGACGTTGAGTTGTTTATTATG CCACTCAATTTTTTTGCATGCTCTAAAAACTACAACTTAGTATGGTGGGTATGATGGGGTAGCCGCAGGCTCAGCTGCGA ACTCCACAGGGTTAAATGGCTCTGGAGGTGTAGCTAAAAACTGCACAAAGTGAACAGGTCCTGGTGCCACAATGCCAGAG CTTTTGAGTTCAGCCATTCCTCGACGAGCATTCCCACCTTCTGCTTCACACAACATAGGAAGAAACACACCTACAAACAC ACAACAAAATGCTCATGCTCAACACCTATATAACATATTTGGAACAATTTATTGGAAATTATCTTGTGAGGCATGACACT TATATTGTTTACATAATCAACCATATTCTATATGTTGAATGTGCACATGTCTTGAGAATTTAATCAAGTTTACCCTAATT AAACCTTAAAAAGGTTATTCATGAGGAAATTACCTCTCTACCCTTTTTACTTTGACATATCTCACATCTATGTCCCAATT GGGCTTTGAAGTGATTTTGGGTAAATAACTTAATTAAGTGCTTATAAAACTTCTTTATTAGTTAATTTGAGAAACTTTTT GAAATAAGTGAAATTAAGTTATAAGTAGGCATAAGCTCTCACTCATGAATTAATCTGAATAAATTACGAAAATAAGTTCA AAACAACTTATAGGTAGGTTGTAATCTATCTACATAAAATTTCAAAAAAAAAAAACCTATCTACATAAGCTCTTGCTTAT CTAAAACAATCTACATAAGCTCTTCAACACTTCTATAAGCGCTTATGCATAGTCATATGATAAGTTCTTCCAAATGAGTC TAACTTAATATCAAAAGTTAGCTCATAAATGAAAAGTTGTCCTAAATGCATCTTTGAAAACTTGTTTGAAGGCAACACAT AGTGGTGAATAAAAACAAACTACCATGCTTTTGGCTTTAGTGTGTTTTTCAAATGAGTTTTCAAGTAGACTTAATCGTTT TTTGACCATTTCTCTGATCAATGCAAGACCTTTTAACATAAATGTTTTGTTTTGGTTACCTTCACCAGCTGCAAGATTGA AGTATAAGTCAACAACATTTGGGCAACTCTGGTAGCACTGAGGGGAACAAAGCTGGTGAGTGAAGCGGGACTCAAGAAGA GAATCTGATGAGATTCCAAGGGATTTTCTGTCCAATCCACAAGCCTTGACGCACTGCTCAGTTTCAATGTGATCCTTCAA TTTATCAGCTTCAATCTCAGATGTCCTGCATGTGTATGCTTCCTCCCCTGTTCTCTTCACACGCTTCTCAAGCACACAGC GTTTTCCACCAGATGACACGGCAAATGAGCACGTTTCCTCGCTCAGATTCTCACATTCTATCCCTCCTGCAACAATGTTA ATTTCAACATTAACTATGATGTTTAGATTGTAAGAACAAGAATTAAGAATTTCATTAGTCATATGTGTCATGTGTGTGCT TGTTTAAGAGATTATTTGAGAGGTTTTGGAGACTTACCAAGAGTGCCTTGCACGGCGAGAGAAAATGTGAGGGCAAGTAT TGCCAAACTCATCAAGCTAAAGTTAGAGGCCATGGCTTCAAGCAGAAGAAGAGGCTTTGGTAACTTGTGTTTGAGTTTGG AGGAATGGATGTTATGAGGTTTGATGGGGCTTGTGTTTTTATAATGGTTTTACAATGGCAGTTATAGTGGATCCCTGCCT ACTAAT
CDS sequence (LotjaGi5g1v0300100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGAGATTCTTCACATCCAGGGAGGACAATGCGGGAACCAGATCGGAGCAAAGTTCTGGGAGGTGGTGTGCGCGGA GCACGGGATCGACTCCACCGGAAGGTACCAGGGGAACACTGACATGCAACTCGAGCGAGTCAATGTCTACTACAATGAAG CGAGTTGCGGGAGGTTTGTACCTAGGGCGGTGCTCATGGATCTGGAGCCTGGCACCATGGACAGTGTCAGATCTGGTCCA TACGGCCAGATTTTCCGGCCGGATAACTTTGTTTTCGGACAGTCCGGCGCCGGAAACAACTGGGCTAAGGGTCACTACAC CGAGGGGGCTGAGTTGATTGACTCGGTCCTCGATGTGGTCAGAAAGGAGGCTGAGAACTGTGATTGCCTTCAAGGGTTTC AGGTTTGCCACTCTCTTGGTGGTGGAACTGGTTCCGGAATGGGAACACTTTTGATTTCCAAGATCAGAGAAGAGTACCCT GATCGAATGATGCTCACTTTCTCTGTGTTCCCATCGCCTAAGGTATCTGACACTGTTGTTGAGCCTTACAATGCCACACT CTCTGTGCACCAGCTTGTTGAGAACGCTGATGAATGCATGGTGTTGGATAATGAAGCTCTTTATGATATCTGCTTCCGAA CCCTTAAGCTCACTACTCCAAGCTTTGGAGATTTGAACCATCTCATTTCAGCCACCATGAGTGGTGTGACATGCTGTCTT CGATTCCCTGGTCAACTCAATTCTGATCTGCGGAAGCTGGCCGTGAATCTCATTCCCTTCCCTCGTCTGCATTTCTTCAT GGTGGGATTTGCCCCACTCACATCACGTGGATCACAGCAGTACAGGGCCCTCACTGTGCCTGAGTTGACCCAACAAATGT GGGATGCCAAGAACATGATGTGCGCAGCTGATCCTCGACACGGTCGTTACTTGACAGCTTCTGCCATGTTCCGTGGGAAG ATGAGCACCAAGGAGGTTGATGAGCAGATGATCAATGTCCAGAACAAGAATTCCTCCTACTTTGTCGAGTGGATCCCCAA CAATGTTAAGTCCACTGTCTGTGACATCCCTCCAACTGGTCTCAAAATGGCTTCCACCTTCATTGGCAACTCCACATCCA TTCAAGAGATGTTCCGGAGGGTGAGTGAGCAGTTCACAGCTATGTTCCGCAGGAAGGCTTTCTTGCATTGGTACACCGGA GAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTTGTCTCGGAGTACCAGCAGTACCAGGA TGCAACTGCAGATGATGAGGGGTATGACTATGAAGATGAGGATGAAGTTCAGGAGGAGGATTCTTAG
Protein sequence (LotjaGi5g1v0300100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEDEVQEEDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 1 | 243 | 243 | 1.83E-103 | ||
Gene3D | 1 | 262 | 262 | 2.7E-128 | ||
ProSitePatterns | 1 | 4 | 4 | - | ||
CDD | 2 | 426 | 425 | 0.0 | – | |
PANTHER | 2 | 442 | 441 | 0.0 | – | |
PANTHER | 2 | 442 | 441 | 0.0 | ||
Pfam | 3 | 211 | 209 | 2.3E-69 | ||
PRINTS | 10 | 30 | 21 | 3.0E-105 | ||
PRINTS | 41 | 58 | 18 | 1.0E-121 | ||
SMART | 47 | 244 | 198 | 4.0E-70 | ||
PRINTS | 51 | 70 | 20 | 3.0E-105 | ||
PRINTS | 88 | 99 | 12 | 1.0E-121 | ||
PRINTS | 93 | 104 | 12 | 3.0E-105 | ||
PRINTS | 106 | 130 | 25 | 3.0E-105 | ||
PRINTS | 108 | 126 | 19 | 1.0E-121 | ||
PRINTS | 132 | 150 | 19 | 3.0E-105 | ||
ProSitePatterns | 140 | 146 | 7 | - | ||
PRINTS | 151 | 172 | 22 | 3.0E-105 | ||
PRINTS | 152 | 164 | 13 | 1.0E-121 | ||
PRINTS | 176 | 189 | 14 | 3.0E-105 | ||
PRINTS | 190 | 210 | 21 | 3.0E-105 | ||
PRINTS | 212 | 224 | 13 | 1.0E-121 | ||
PRINTS | 230 | 239 | 10 | 1.0E-121 | ||
SUPERFAMILY | 244 | 429 | 186 | 4.58E-81 | ||
PRINTS | 245 | 258 | 14 | 1.0E-121 | ||
SMART | 246 | 383 | 138 | 1.3E-42 | ||
Pfam | 261 | 382 | 122 | 8.3E-41 | ||
Gene3D | 263 | 373 | 111 | 4.4E-53 | ||
PRINTS | 265 | 281 | 17 | 1.0E-121 | ||
PRINTS | 311 | 329 | 19 | 1.0E-121 | ||
PRINTS | 329 | 343 | 15 | 1.0E-121 | ||
PRINTS | 347 | 370 | 24 | 1.0E-121 | ||
PRINTS | 370 | 398 | 29 | 3.0E-105 | ||
Gene3D | 374 | 446 | 73 | 3.3E-34 | ||
PRINTS | 377 | 388 | 12 | 1.0E-121 | ||
Coils | 408 | 428 | 21 | - | – | |
PRINTS | 412 | 430 | 19 | 1.0E-121 | ||
MobiDBLite | 423 | 448 | 26 | - | – | |
MobiDBLite | 431 | 448 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi5g1v0300100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…